The Low-Copy-Number Satellite DNAs of the Model Beetle Tribolium castaneum
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M. Plohl | N. Meštrović | B. Mravinac | Tena Gržan | Evelin Despot-Slade | Marin Volarić | Damira Veseljak | Mira Dombi
[1] M. Plohl,et al. Satellite DNAs—From Localized to Highly Dispersed Genome Components , 2023, Genes.
[2] S. Louzada,et al. Human Satellite 1A analysis provides evidence of pericentromeric transcription , 2023, BMC Biology.
[3] F. Panzera,et al. Making the Genome Huge: The Case of Triatoma delpontei, a Triatominae Species with More than 50% of Its Genome Full of Satellite DNA , 2023, Genes.
[4] Michelle Louise Zattera,et al. Transposable Elements as a Source of Novel Repetitive DNA in the Eukaryote Genome , 2022, Cells.
[5] P. Lorite,et al. Satellitome of the Red Palm Weevil, Rhynchophorus ferrugineus (Coleoptera: Curculionidae), the Most Diverse Among Insects , 2022, Frontiers in Ecology and Evolution.
[6] S. Henikoff,et al. The genetics and epigenetics of satellite centromeres , 2022, Genome research.
[7] M. Garrido-Ramos,et al. Satellitome comparison of two oedipodine grasshoppers highlights the contingent nature of satellite DNA evolution , 2022, BMC biology.
[8] J. Campbell,et al. Tribolium castaneum: A Model Insect for Fundamental and Applied Research. , 2021, Annual review of entomology.
[9] Muhammad Majid,et al. Comparative Analysis of Transposable Elements in Genus Calliptamus Grasshoppers Revealed That Satellite DNA Contributes to Genome Size Variation , 2021, Insects.
[10] Aaron M. Streets,et al. Complete genomic and epigenetic maps of human centromeres , 2021, bioRxiv.
[11] M. Plohl,et al. Satellitome Analysis of the Pacific Oyster Crassostrea gigas Reveals New Pattern of Satellite DNA Organization, Highly Scattered across the Genome , 2021, International journal of molecular sciences.
[12] F. Panzera,et al. Satellitome Analysis of Rhodnius prolixus, One of the Main Chagas Disease Vector Species , 2021, International journal of molecular sciences.
[13] Aaron M. Streets,et al. The complete sequence of a human genome , 2021, bioRxiv.
[14] Sudhir Kumar,et al. MEGA11: Molecular Evolutionary Genetics Analysis Version 11 , 2021, Molecular biology and evolution.
[15] G. Dias,et al. Structure, Organization, and Evolution of Satellite DNAs: Insights from the Drosophila repleta and D. virilis Species Groups. , 2021, Progress in molecular and subcellular biology.
[16] Matthias Benoit,et al. A Predictive Approach to Infer the Activity and Natural Variation of Retrotransposon Families in Plants. , 2021, Methods in molecular biology.
[17] Carola Greve,et al. The Pontastacus leptodactylus (Astacidae) Repeatome Provides Insight Into Genome Evolution and Reveals Remarkable Diversity of Satellite DNA , 2021, Frontiers in Genetics.
[18] T. Shenk,et al. HSATII RNA is induced via a noncanonical ATM-regulated DNA damage response pathway and promotes tumor cell proliferation and movement , 2020, Proceedings of the National Academy of Sciences.
[19] Pavel Neumann,et al. Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2 , 2020, Nature Protocols.
[20] M. Plohl,et al. CenH3 distribution reveals extended centromeres in the model beetle Tribolium castaneum , 2020, PLoS genetics.
[21] M. Plohl,et al. Satellite DNA-like repeats are dispersed throughout the genome of the Pacific oyster Crassostrea gigas carried by Helentron non-autonomous mobile elements , 2020, Scientific Reports.
[22] P. Lorite,et al. Satellitome Analysis in the Ladybird Beetle Hippodamia variegata (Coleoptera, Coccinellidae) , 2020, Genes.
[23] S. Henikoff,et al. What makes a centromere? , 2020, Experimental cell research.
[24] S. Griffiths-Jones,et al. Enhanced genome assembly and a new official gene set for Tribolium castaneum , 2019, BMC Genomics.
[25] J. Macas,et al. Characterization of repeat arrays in ultra‐long nanopore reads reveals frequent origin of satellite DNA from retrotransposon‐derived tandem repeats , 2019, The Plant journal : for cell and molecular biology.
[26] F. Foresti,et al. Satellitome landscape analysis of Megaleporinus macrocephalus (Teleostei, Anostomidae) reveals intense accumulation of satellite sequences on the heteromorphic sex chromosome , 2019, Scientific Reports.
[27] Joseph G. Mccarter,et al. Birth, evolution, and transmission of satellite-free mammalian centromeric domains , 2018, Genome research.
[28] Reidar Andreson,et al. Primer3_masker: integrating masking of template sequence with primer design software , 2018, Bioinform..
[29] J. Macas,et al. Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing , 2018, Scientific Reports.
[30] Francisco J. Ruiz-Ruano,et al. High-throughput analysis of satellite DNA in the grasshopper Pyrgomorpha conica reveals abundance of homologous and heterologous higher-order repeats , 2018, Chromosoma.
[31] M. Garrido-Ramos. Satellite DNA: An Evolving Topic , 2017, Genes.
[32] Á. Cuadrado,et al. Comparative repeatome analysis on Triatoma infestans Andean and Non-Andean lineages, main vector of Chagas disease , 2017, PloS one.
[33] J. Macas,et al. TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads , 2017, Nucleic acids research.
[34] Francisco J. Ruiz-Ruano,et al. High-throughput analysis of the satellitome illuminates satellite DNA evolution , 2016, Scientific Reports.
[35] M. Plohl,et al. Genome-wide analysis of tandem repeats in Tribolium castaneum genome reveals abundant and highly dynamic tandem repeat families with satellite DNA features in euchromatic chromosomal arms , 2015, DNA research : an international journal for rapid publication of reports on genes and genomes.
[36] I. Feliciello,et al. Correction: Satellite DNA Modulates Gene Expression in the Beetle Tribolium castaneum after Heat Stress , 2015, PLoS genetics.
[37] M. Plohl,et al. Structural and functional liaisons between transposable elements and satellite DNAs , 2015, Chromosome Research.
[38] O. Kohany,et al. Repbase Update, a database of repetitive elements in eukaryotic genomes , 2015, Mobile DNA.
[39] I. Feliciello,et al. Satellite DNA as a Driver of Population Divergence in the Red Flour Beetle Tribolium castaneum , 2014, Genome biology and evolution.
[40] Nicolas Pollet,et al. Insights on genome size evolution from a miniature inverted repeat transposon driving a satellite DNA. , 2014, Molecular phylogenetics and evolution.
[41] A. Ruíz,et al. Tetris Is a Foldback Transposon that Provided the Building Blocks for an Emerging Satellite DNA of Drosophila virilis , 2014, Genome biology and evolution.
[42] T. Schwarzacher,et al. Nucleosomes and centromeric DNA packaging , 2013, Proceedings of the National Academy of Sciences.
[43] Petr Novák,et al. RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads , 2013, Bioinform..
[44] Jeffrey Ross-Ibarra,et al. Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution , 2012, Genome Biology.
[45] I. Feliciello,et al. Satellite DNA-Like Elements Associated With Genes Within Euchromatin of the Beetle Tribolium castaneum , 2012, G3: Genes | Genomes | Genetics.
[46] Kevin W Eliceiri,et al. NIH Image to ImageJ: 25 years of image analysis , 2012, Nature Methods.
[47] G. Kuhn,et al. The 1.688 repetitive DNA of Drosophila: concerted evolution at different genomic scales and association with genes. , 2012, Molecular biology and evolution.
[48] M. Plohl,et al. Parallelism in evolution of highly repetitive DNAs in sibling species. , 2010, Molecular biology and evolution.
[49] Peer Bork,et al. The Genome of the Model Beetle and Pest Tribolium Castaneum Vertebrate-specific Orthologues Insect-specific Orthologues Homology Undetectable Similarity , 2022 .
[50] Susan J. Brown,et al. Analysis of repetitive DNA distribution patterns in the Tribolium castaneum genome , 2008, Genome Biology.
[51] Jerzy Jurka,et al. Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor , 2006, BMC Bioinformatics.
[52] M. Plohl,et al. Conserved patterns in the evolution of Tribolium satellite DNAs. , 2004, Gene.
[53] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[54] D. Franjević,et al. Long Inversely Oriented Subunits Form a Complex Monomer of Triboliumbrevicornis Satellite DNA , 2004, Journal of Molecular Evolution.
[55] M. Plohl,et al. Evolution of satellite DNAs from the genus Palorus--experimental evidence for the "library" hypothesis. , 1998, Molecular biology and evolution.
[56] M. Plohl,et al. Satellite DNA of the red flour beetle Tribolium castaneum--comparative study of satellites from the genus Tribolium. , 1996, Molecular biology and evolution.
[57] M. Plohl,et al. Evolution of Tribolium madens (Insecta, Coleoptera) Satellite DNA Through DNA Inversion and Insertion , 1996, Journal of Molecular Evolution.
[58] J. Stuart,et al. Cytogenetics of chromosome rearrangements in Tribolium castaneum. , 1995, Genome.
[59] M. Plohl,et al. Satellite DNA and heterochromatin of the flour beetle Tribolium confusum. , 1993, Genome.
[60] J. M. Rubio,et al. Presence of highly repetitive DNA sequences in Tribolium flour-beetles , 1993, Heredity.
[61] Susan J. Brown,et al. Molecular genetic manipulation of the red flour beetle: Genome organization and cloning of a ribosomal protein gene , 1990 .
[62] G. Dover. Molecular drive in multigene families: How biological novelties arise, spread and are assimilated , 1986 .
[63] W. Salser,et al. Nucleotide sequences of HS-α satellite DNA from kangaroo rat dipodomys ordii and characterization of similar sequences in other rodents , 1977, Cell.
[64] S. Kit,et al. Equilibrium sedimentation in density gradients of DNA preparations from animal tissues. , 1961, Journal of molecular biology.