Human genomic disease variants : A neutral evolutionary explanation

Many perspectives on the role of evolution in human health include nonempirical assumptions concerning the adaptive evolutionary origins of human diseases. Evolutionary analyses of the increasing wealth of clinical and population genomic data have begun to challenge these presumptions. In order to systematically evaluate such claims, the time has come to build a common framework for an empirical and intellectual unification of evolution and modern medicine. We review the emerging evidence and provide a supporting conceptual framework that establishes the classical neutral theory of molecular evolution (NTME) as the basis for evaluating disease- associated genomic variations in health and medicine. For over a decade, the NTME has already explained the origins and distribution of variants implicated in diseases and has illuminated the power of evolutionary thinking in genomic medicine. We suggest that a majority of disease variants in modern populations will have neutral evolutionary origins (previously neutral), with a relatively smaller fraction exhibiting adaptive evolutionary origins (previously adaptive). This pattern is expected to hold true for common as well as rare disease variants. Ultimately, a neutral evolutionary perspective will provide medicine with an informative and actionable framework that enables objective clinical assessment beyond convenient tendencies to invoke past adaptive events in human history as a root cause of human disease.

[1]  David B. Witonsky,et al.  Human adaptations to diet, subsistence, and ecoregion are due to subtle shifts in allele frequency , 2010, Proceedings of the National Academy of Sciences.

[2]  R. Erickson Somatic gene mutation and human disease other than cancer. , 2003, Mutation research.

[3]  Pardis C Sabeti,et al.  Detecting recent positive selection in the human genome from haplotype structure , 2002, Nature.

[4]  Molly Przeworski,et al.  How reliable are empirical genomic scans for selective sweeps? , 2006, Genome research.

[5]  P. Keightley,et al.  Interference among deleterious mutations favours sex and recombination in finite populations , 2006, Nature.

[6]  Joseph K. Pickrell,et al.  The Role of Geography in Human Adaptation , 2009, PLoS genetics.

[7]  J. Pritchard,et al.  The allelic architecture of human disease genes: common disease-common variant...or not? , 2002, Human molecular genetics.

[8]  Peter M Visscher,et al.  Recent human effective population size estimated from linkage disequilibrium. , 2007, Genome research.

[9]  Emily H Turner,et al.  Targeted Capture and Massively Parallel Sequencing of Twelve Human Exomes , 2009, Nature.

[10]  Pardis C Sabeti,et al.  Genome-wide detection and characterization of positive selection in human populations , 2007, Nature.

[11]  Qianqian Zhu,et al.  A genome-wide comparison of the functional properties of rare and common genetic variants in humans. , 2011, American journal of human genetics.

[12]  Matthew W. Hahn,et al.  Positive Selection on MMP3 Regulation Has Shaped Heart Disease Risk , 2004, Current Biology.

[13]  S. Fullerton,et al.  Population genetics of CAPN10 and GPR35: implications for the evolution of type 2 diabetes variants. , 2005, American journal of human genetics.

[14]  Patrick D. Evans,et al.  Ongoing Adaptive Evolution of ASPM, a Brain Size Determinant in Homo sapiens , 2005, Science.

[15]  Jason E Stajich,et al.  Disentangling the effects of demography and selection in human history. , 2004, Molecular biology and evolution.

[16]  Berrigan Evolution in health and disease , 1999, Public health.

[17]  A. Butte,et al.  Extreme Evolutionary Disparities Seen in Positive Selection across Seven Complex Diseases , 2010, PloS one.

[18]  Ryan D. Hernandez,et al.  Classic Selective Sweeps Were Rare in Recent Human Evolution , 2011, Science.

[19]  Dmitry Pushkarev,et al.  Single-molecule sequencing of an individual human genome , 2009, Nature Biotechnology.

[20]  Zhi John Lu,et al.  Analysis of genomic variation in non-coding elements using population-scale sequencing data from the 1000 Genomes Project , 2011, Nucleic acids research.

[21]  Sudhir Kumar,et al.  TimeTree2: species divergence times on the iPhone , 2011, Bioinform..

[22]  Andrew G. Clark,et al.  Darwinian and demographic forces affecting human protein coding genes. , 2009, Genome research.

[23]  Justin C. Fay,et al.  Identification of deleterious mutations within three human genomes. , 2009, Genome research.

[24]  Justin C. Fay,et al.  A Catalog of Neutral and Deleterious Polymorphism in Yeast , 2008, PLoS genetics.

[25]  M. McCarthy,et al.  Genome-wide association studies: potential next steps on a genetic journey. , 2008, Human molecular genetics.

[26]  Serafim Batzoglou,et al.  Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes. , 2010, Genome research.

[27]  Joseph K. Pickrell,et al.  Signals of recent positive selection in a worldwide sample of human populations. , 2009, Genome research.

[28]  P. Gluckman,et al.  Living with the Past: Evolution, Development, and Patterns of Disease , 2004, Science.

[29]  P. Bork,et al.  Human non-synonymous SNPs: server and survey. , 2002, Nucleic acids research.

[30]  M Potts,et al.  Evolutionary Medicine , 2017 .

[31]  Ryan D. Hernandez,et al.  Proportionally more deleterious genetic variation in European than in African populations , 2008, Nature.

[32]  P. Bork,et al.  A method and server for predicting damaging missense mutations , 2010, Nature Methods.

[33]  H. Dietz,et al.  Nonsense-mediated mRNA decay in health and disease. , 1999, Human molecular genetics.

[34]  G. Wray,et al.  Evolution of a malaria resistance gene in wild primates , 2009, Nature.

[35]  L. Hurst Genetics and the understanding of selection , 2009, Nature Reviews Genetics.

[36]  C. Rotimi,et al.  Ancestry and disease in the age of genomic medicine. , 2010, The New England journal of medicine.

[37]  Dawei Li,et al.  The diploid genome sequence of an Asian individual , 2008, Nature.

[38]  H. Boezen,et al.  Genome-wide association studies: what do they teach us about asthma and chronic obstructive pulmonary disease? , 2009, Proceedings of the American Thoracic Society.

[39]  E. Cerasi,et al.  DIABETES MELLITUS , 1924, Nihon rinsho. Japanese journal of clinical medicine.

[40]  F. Collins,et al.  Potential etiologic and functional implications of genome-wide association loci for human diseases and traits , 2009, Proceedings of the National Academy of Sciences.

[41]  Why we get sick: The new science of darwinian medicine: by Randolph M. Nesse and George C. Williams Times Books, 1995. $24.00 hbk (xi + 291 pages) ISBN 0 8129 2224 7 , 1995 .

[42]  K. Campbell,et al.  Posttranslational Modification of α-Dystroglycan, the Cellular Receptor for Arenaviruses, by the Glycosyltransferase LARGE Is Critical for Virus Binding , 2005, Journal of Virology.

[43]  J. Lupski,et al.  Clan Genomics and the Complex Architecture of Human Disease , 2011, Cell.

[44]  A. Allison,et al.  Protection Afforded by Sickle-cell Trait Against Subtertian Malarial Infection , 1954, British medical journal.

[45]  George C. Williams,et al.  Why We Get Sick: The New Science of Darwinian Medicine , 1995 .

[46]  Kosuke M. Teshima,et al.  Natural Selection on Genes that Underlie Human Disease Susceptibility , 2008, Current Biology.

[47]  B. Charlesworth,et al.  A polygenic basis for late-onset disease. , 2003, Trends in genetics : TIG.

[48]  Anders Albrechtsen,et al.  Natural Selection Affects Multiple Aspects of Genetic Variation at Putatively Neutral Sites across the Human Genome , 2011, PLoS genetics.

[49]  Carl T. Bergstrom,et al.  Making evolutionary biology a basic science for medicine , 2010, Proceedings of the National Academy of Sciences.

[50]  Andrew G. Clark,et al.  Haplotype Diversity and Linkage Disequilibrium at Human G6PD: Recent Origin of Alleles That Confer Malarial Resistance , 2001, Science.

[51]  Patrice M. Milos,et al.  Single-molecule sequencing: sequence methods to enable accurate quantitation. , 2010, Methods in enzymology.

[52]  Marla Gearing,et al.  Aβ 40 is a major form of β-amyloid in nonhuman primates , 1996, Neurobiology of Aging.

[53]  Justin C. Fay,et al.  Evidence for Hitchhiking of Deleterious Mutations within the Human Genome , 2011, PLoS genetics.

[54]  Gabor T. Marth,et al.  Demographic history and rare allele sharing among human populations , 2011, Proceedings of the National Academy of Sciences.

[55]  Martin S. Taylor,et al.  The (non)malignancy of cancerous amino acidic substitutions , 2010, Proteins.

[56]  Peter Gluckman,et al.  Principles of Evolutionary Medicine , 2009 .

[57]  M. Marazita,et al.  Genome-wide Association Studies , 2012, Journal of dental research.

[58]  Paul Flicek,et al.  The functional spectrum of low-frequency coding variation , 2011, Genome Biology.

[59]  B. Rannala Evolving Health: The Origins of Illness and How the Modern World Is Making Us Sick , 2003 .

[60]  Timothy B. Stockwell,et al.  The Diploid Genome Sequence of an Individual Human , 2007, PLoS biology.

[61]  P. Keightley,et al.  Estimating the rate of adaptive molecular evolution in the presence of slightly deleterious mutations and population size change. , 2009, Molecular biology and evolution.

[62]  S. Tishkoff,et al.  African genetic diversity: implications for human demographic history, modern human origins, and complex disease mapping. , 2008, Annual review of genomics and human genetics.

[63]  David Haussler,et al.  The UCSC genome browser database: update 2007 , 2006, Nucleic Acids Res..

[64]  Philipp Kapranov,et al.  Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution. , 2007, Genome research.

[65]  David B. Witonsky,et al.  CYP3A variation and the evolution of salt-sensitivity variants. , 2004, American journal of human genetics.

[66]  R. Caspari,et al.  Older age becomes common late in human evolution. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[67]  M. Nei Molecular Evolutionary Genetics , 1987 .

[68]  Josef Parnas,et al.  A global perspective on genetic variation at the ADH genes reveals unusual patterns of linkage disequilibrium and diversity. , 2002, American journal of human genetics.

[69]  R. Erickson Somatic gene mutation and human disease other than cancer: an update. , 2010, Mutation research.

[70]  Markus Scholz,et al.  Genetic Variation and Recent Positive Selection in Worldwide Human Populations: Evidence from Nearly 1 Million SNPs , 2009, PloS one.

[71]  M. Stoneking,et al.  Worldwide population differentiation at disease-associated SNPs , 2008, BMC Medical Genomics.

[72]  L. Jorde,et al.  Haplotype analysis of hemochromatosis: evaluation of different linkage-disequilibrium approaches and evolution of disease chromosomes. , 1997, American journal of human genetics.

[73]  Wei Wang,et al.  Natural selection on EPAS1 (HIF2α) associated with low hemoglobin concentration in Tibetan highlanders , 2010, Proceedings of the National Academy of Sciences.

[74]  A. Prentice,et al.  Evolutionary origins of the obesity epidemic: natural selection of thrifty genes or genetic drift following predation release? , 2008, International Journal of Obesity.

[75]  M. Kreitman,et al.  Sequence variation and haplotype structure at the human HFE locus. , 2002, Genetics.

[76]  M. Hammer,et al.  Nucleotide variability at G6pd and the signature of malarial selection in humans. , 2002, Genetics.

[77]  M. Kimura Evolutionary Rate at the Molecular Level , 1968, Nature.

[78]  Terrence S. Furey,et al.  The UCSC Genome Browser Database , 2003, Nucleic Acids Res..

[79]  Pierre Baldi,et al.  An enhanced MITOMAP with a global mtDNA mutational phylogeny , 2006, Nucleic Acids Res..

[80]  A. G. Pedersen,et al.  Computational Molecular Evolution , 2013 .

[81]  Gennady M Verkhivker,et al.  Sequence and Structure Signatures of Cancer Mutation Hotspots in Protein Kinases , 2009, PloS one.

[82]  Pardis C Sabeti,et al.  Positive Natural Selection in the Human Lineage , 2006, Science.

[83]  S. Stearns Evolution in Health and Disease , 2008 .

[84]  N. Saitou,et al.  Natural selection and population history in the human angiotensinogen gene (AGT): 736 complete AGT sequences in chromosomes from around the world. , 2004, American journal of human genetics.

[85]  Sudhir Kumar,et al.  Positional conservation and amino acids shape the correct diagnosis and population frequencies of benign and damaging personal amino acid mutations. , 2009, Genome research.

[86]  Patrick D. Evans,et al.  Microcephalin, a Gene Regulating Brain Size, Continues to Evolve Adaptively in Humans , 2005, Science.

[87]  A. Clark,et al.  Extended linkage disequilibrium surrounding the hemoglobin E variant due to malarial selection. , 2004, American journal of human genetics.

[88]  J. Neel Diabetes mellitus: a "thrifty" genotype rendered detrimental by "progress"? , 1962, American journal of human genetics.

[89]  J. Pritchard Are rare variants responsible for susceptibility to complex diseases? , 2001, American journal of human genetics.

[90]  D. Kwiatkowski How malaria has affected the human genome and what human genetics can teach us about malaria. , 2005, American journal of human genetics.

[91]  Holly M. Mortensen,et al.  Convergent adaptation of human lactase persistence in Africa and Europe , 2007, Nature Genetics.

[92]  Dong-Dong Wu,et al.  Positive selection drives population differentiation in the skeletal genes in modern humans. , 2010, Human molecular genetics.

[93]  Matthew W. Hahn,et al.  Ancient and Recent Positive Selection Transformed Opioid cis-Regulation in Humans , 2005, PLoS biology.

[94]  Ryan D. Hernandez,et al.  Assessing the Evolutionary Impact of Amino Acid Mutations in the Human Genome , 2008, PLoS genetics.

[95]  M. Adams,et al.  Inferring Nonneutral Evolution from Human-Chimp-Mouse Orthologous Gene Trios , 2003, Science.

[96]  L. Jorde,et al.  A method for detecting recent selection in the human genome from allele age estimates. , 2003, Genetics.

[97]  A. Sadeh,et al.  Infant-parent co-sleeping in an evolutionary perspective: implications for understanding infant sleep development and the sudden infant death syndrome. , 1993, Sleep.

[98]  Omar E. Cornejo,et al.  Phased Whole-Genome Genetic Risk in a Family Quartet Using a Major Allele Reference Sequence , 2011, PLoS genetics.

[99]  Carlos D Bustamante,et al.  Localizing Recent Adaptive Evolution in the Human Genome , 2007, PLoS genetics.

[100]  C. Sander,et al.  The amino-acid mutational spectrum of human genetic disease , 2003, Genome Biology.

[101]  Joseph K. Pickrell,et al.  A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes , 2012, Science.

[102]  Manolis Kellis,et al.  HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants , 2011, Nucleic Acids Res..

[103]  J. Welch,et al.  Divergence and Polymorphism Under the Nearly Neutral Theory of Molecular Evolution , 2008, Journal of Molecular Evolution.

[104]  Josée Dupuis,et al.  Interpreting results of large-scale genetic association studies: separating gold from fool's gold. , 2007, JAMA.

[105]  Mary Goldman,et al.  The UCSC Genome Browser database: update 2011 , 2010, Nucleic Acids Res..

[106]  L. Excoffier,et al.  Large Allele Frequency Differences between Human Continental Groups are more Likely to have Occurred by Drift During range Expansions than by Selection , 2009, Annals of human genetics.

[107]  Huanming Yang,et al.  Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants , 2010, Nature Genetics.

[108]  M. Miller,et al.  Understanding human disease mutations through the use of interspecific genetic variation. , 2001, Human molecular genetics.

[109]  R. Altman,et al.  The incidentalome: a threat to genomic medicine. , 2006, JAMA.

[110]  Sudhir Kumar,et al.  Evolutionary anatomies of positions and types of disease-associated and neutral amino acid mutations in the human genome , 2006, BMC Genomics.

[111]  C. Orengo,et al.  Cancer‐associated mutations are preferentially distributed in protein kinase functional sites , 2009, Proteins.

[112]  Sharon R Grossman,et al.  Integrating common and rare genetic variation in diverse human populations , 2010, Nature.

[113]  N. Boaz Evolving Health: The Origins of Illness and How the Modern World Is Making Us Sick , 2002 .

[114]  S. Henikoff,et al.  Predicting the effects of amino acid substitutions on protein function. , 2006, Annual review of genomics and human genetics.

[115]  Masatoshi Nei,et al.  The neutral theory of molecular evolution in the genomic era. , 2010, Annual review of genomics and human genetics.

[116]  A. Di Rienzo,et al.  Detection of the signature of natural selection in humans: evidence from the Duffy blood group locus. , 2000, American journal of human genetics.

[117]  P. Ewald,et al.  Plague Time: How Stealth Infections Cause Cancer, Heart Disease, and Other Deadly Ailments , 2000 .

[118]  John Novembre,et al.  Spatial patterns of variation due to natural selection in humans , 2009, Nature Reviews Genetics.

[119]  Emily H Turner,et al.  Targeted Capture and Massively Parallel Sequencing of Twelve Human Exomes , 2009, Nature.

[120]  C. Greenman,et al.  Germline Fitness-Based Scoring of Cancer Mutations , 2011, Genetics.

[121]  Rong Chen,et al.  Similarly Strong Purifying Selection Acts on Human Disease Genes of All Evolutionary Ages , 2009, Genome biology and evolution.

[122]  K. Kidd,et al.  The evolution and population genetics of the ALDH2 locus: random genetic drift, selection, and low levels of recombination , 2004, Annals of human genetics.

[123]  A. Fujimoto,et al.  A Practical Genome Scan for Population-Specific Strong Selective Sweeps That Have Reached Fixation , 2007, PloS one.

[124]  Laura C. Greaves,et al.  Mitochondrial DNA mutations in human disease , 2006, IUBMB life.

[125]  A. Butte,et al.  Non-Synonymous and Synonymous Coding SNPs Show Similar Likelihood and Effect Size of Human Disease Association , 2010, PloS one.

[126]  J. Dudley,et al.  Phylomedicine: an evolutionary telescope to explore and diagnose the universe of disease mutations. , 2011, Trends in genetics : TIG.

[127]  Karin Johst,et al.  Deleterious mutations can surf to high densities on the wave front of an expanding population. , 2007, Molecular biology and evolution.

[128]  K. Kidd,et al.  Crohn's disease risk alleles on the NOD2 locus have been maintained by natural selection on standing variation. , 2012, Molecular biology and evolution.

[129]  M. Lynch The frailty of adaptive hypotheses for the origins of organismal complexity , 2007, Proceedings of the National Academy of Sciences.

[130]  W. Li,et al.  Statistical tests of neutrality of mutations. , 1993, Genetics.

[131]  Matthew Mort,et al.  The Human Gene Mutation Database: providing a comprehensive central mutation database for molecular diagnostics and personalised genomics , 2009, Human Genomics.

[132]  David B. Goldstein,et al.  Rare Variants Create Synthetic Genome-Wide Associations , 2010, PLoS biology.

[133]  Maxwell D. Sanderford,et al.  Evolutionary meta-analysis of association studies reveals ancient constraints affecting disease marker discovery. , 2012, Molecular biology and evolution.

[134]  J. Lupski,et al.  The complete genome of an individual by massively parallel DNA sequencing , 2008, Nature.

[135]  Stephen C Stearns,et al.  Evolutionary perspectives on health and medicine , 2010, Proceedings of the National Academy of Sciences.

[136]  W. Stephan,et al.  Joint effects of genetic hitchhiking and background selection on neutral variation. , 2000, Genetics.

[137]  M. Gerstein,et al.  Variation in Transcription Factor Binding Among Humans , 2010, Science.

[138]  Sarah A Tishkoff,et al.  Signatures of selection and gene conversion associated with human color vision variation. , 2004, American journal of human genetics.

[139]  Greg Gibson,et al.  Decanalization and the origin of complex disease , 2009, Nature Reviews Genetics.

[140]  Amin Zia,et al.  Ranking insertion, deletion and nonsense mutations based on their effect on genetic information , 2011, BMC Bioinformatics.

[141]  Caleb E. Finch,et al.  Evolution of the human lifespan and diseases of aging: Roles of infection, inflammation, and nutrition , 2009, Proceedings of the National Academy of Sciences.

[142]  P. Tucker,et al.  Episodic evolution of pyrin in primates: human mutations recapitulate ancestral amino acid states , 2001, Nature Genetics.

[143]  Eduardo Ruiz-Pesini,et al.  20 years of human mtDNA pathologic point mutations: carefully reading the pathogenicity criteria. , 2009, Biochimica et biophysica acta.

[144]  D. Rubinsztein,et al.  Arginine residues at codons 112 and 158 in the apolipoprotein E gene correspond to the ancestral state in humans. , 1995, Atherosclerosis.

[145]  Alexander A. Morgan,et al.  Clinical assessment incorporating a personal genome , 2010, The Lancet.

[146]  S A Forbes,et al.  The Catalogue of Somatic Mutations in Cancer (COSMIC) , 2008, Current protocols in human genetics.

[147]  J. Swanson,et al.  The genetic architecture of selection at the human dopamine receptor D4 (DRD4) gene locus. , 2004, American journal of human genetics.

[148]  D. Altshuler,et al.  A map of human genome variation from population-scale sequencing , 2010, Nature.

[149]  E. Boerwinkle,et al.  Apolipoprotein E variation at the sequence haplotype level: implications for the origin and maintenance of a major human polymorphism. , 2000, American journal of human genetics.

[150]  P. Thomas,et al.  Coding single-nucleotide polymorphisms associated with complex vs. Mendelian disease: evolutionary evidence for differences in molecular effects. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[151]  Rachel Karchin,et al.  Next generation tools for the annotation of human SNPs , 2009, Briefings Bioinform..

[152]  T. Ohta THE NEARLY NEUTRAL THEORY OF MOLECULAR EVOLUTION , 1992 .

[153]  Robin I. M. Dunbar Gossip in Evolutionary Perspective , 2004 .

[154]  Jay Shendure,et al.  Single-nucleotide evolutionary constraint scores highlight disease-causing mutations , 2010, Nature Methods.

[155]  Israel T. da Silva,et al.  MamMiBase: a mitochondrial genome database for mammalian phylogenetic studies , 2005, Bioinform..

[156]  J. Pritchard,et al.  A Map of Recent Positive Selection in the Human Genome , 2006, PLoS biology.

[157]  Kirk E Lohmueller,et al.  Detecting ancient admixture and estimating demographic parameters in multiple human populations. , 2009, Molecular biology and evolution.

[158]  D. Hartl,et al.  Population genetics of polymorphism and divergence. , 1992, Genetics.

[159]  Seraina Klopfstein,et al.  The fate of mutations surfing on the wave of a range expansion. , 2006, Molecular biology and evolution.

[160]  Greg Gibson,et al.  Rare and common variants: twenty arguments , 2012, Nature Reviews Genetics.

[161]  Chaitanya S. Gokhale,et al.  MtSNPscore: a combined evidence approach for assessing cumulative impact of mitochondrial variations in disease , 2009, BMC Bioinformatics.

[162]  G. Omenn,et al.  Medicine Needs Evolution , 2006, Science.

[163]  D. Goldstein,et al.  Uncovering the roles of rare variants in common disease through whole-genome sequencing , 2010, Nature Reviews Genetics.

[164]  Shamil R Sunyaev,et al.  Most rare missense alleles are deleterious in humans: implications for complex disease and association studies. , 2007, American journal of human genetics.

[165]  N. Rosenberg,et al.  Coalescence-Time Distributions in a Serial Founder Model of Human Evolutionary History , 2011, Genetics.

[166]  R. Hudson,et al.  Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[167]  S. Sunyaev,et al.  Dobzhansky–Muller incompatibilities in protein evolution , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[168]  J. Wilmoth Demography of longevity: past, present, and future trends , 2000, Experimental Gerontology.

[169]  J. Swanson,et al.  Evidence of positive selection acting at the human dopamine receptor D4 gene locus , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[170]  Melissa S. Cline,et al.  Using bioinformatics to predict the functional impact of SNVs , 2011, Bioinform..

[171]  Selma Giorgio,et al.  Plague Time: how stealth infections cause cancers, heart disease, and other deadly ailments , 2002 .

[172]  B. Peters,et al.  Distinguishing cancer-associated missense mutations from common polymorphisms. , 2007, Cancer research.

[173]  Doron Lancet,et al.  Evidence for positive selection and population structure at the human MAO-A gene , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[174]  Judy H. Cho,et al.  Finding the missing heritability of complex diseases , 2009, Nature.

[175]  Or Zuk,et al.  A Composite of Multiple Signals Distinguishes Causal Variants in Regions of Positive Selection , 2010, Science.

[176]  T. Jukes,et al.  The neutral theory of molecular evolution. , 2000, Genetics.

[177]  A. Eyre-Walker Evolution in health and medicine Sackler colloquium: Genetic architecture of a complex trait and its implications for fitness and genome-wide association studies. , 2010, Proceedings of the National Academy of Sciences of the United States of America.

[178]  A. Gonzalez-Perez,et al.  Improving the assessment of the outcome of nonsynonymous SNVs with a consensus deleteriousness score, Condel. , 2011, American journal of human genetics.

[179]  A. Oskooi Molecular Evolution and Phylogenetics , 2008 .

[180]  J. Speakman Thrifty genes for obesity, an attractive but flawed idea, and an alternative perspective: the ‘drifty gene’ hypothesis , 2008, International Journal of Obesity.

[181]  A. Kern,et al.  Mechanisms and convergence of compensatory evolution in mammalian mitochondrial tRNAs , 2004, Nature Genetics.

[182]  M. Hentze,et al.  Nonsense-mediated decay approaches the clinic , 2004, Nature Genetics.