Identification of novel inhibitors of methionyl-tRNA synthetase (MetRS) by virtual screening.

Multiple inhibitors of the antibacterial target, Staphylococcus aureus MetRS, were identified by virtual screening. The process consisted of building a Catalyst pharmacophore from a ligand-S. aureus MetRS structure and using this pharmacophore to screen a commercial database. The top hits from this search were then docked into the S. aureus MetRS structure and this information was used to select compounds for testing. This resulted in a high hit rate of compounds that are in distinct structural classes from the known MetRS ligands.

[1]  O. Nureki,et al.  Crystal structure of Escherichia coli methionyl-tRNA synthetase highlights species-specific features. , 1999, Journal of molecular biology.

[2]  J. Risler,et al.  How methionyl-tRNA synthetase creates its amino acid recognition pocket upon L-methionine binding. , 2001, Journal of molecular biology.

[3]  Sunghoon Kim,et al.  Pharmacophore-based virtual screening: the discovery of novel methionyl-tRNA synthetase inhibitors. , 2006, Bioorganic & medicinal chemistry letters.

[4]  A. Pope,et al.  A homogeneous method to measure aminoacyl-tRNA synthetase aminoacylation activity using scintillation proximity assay technology. , 2000, Analytical biochemistry.

[5]  A. K. Forrest,et al.  Nanomolar inhibitors of Staphylococcus aureus methionyl tRNA synthetase with potent antibacterial activity against gram-positive pathogens. , 2002, Journal of medicinal chemistry.

[6]  P. Youngman,et al.  Antimicrobials: new solutions badly needed. , 2002, Current opinion in microbiology.

[7]  C. Venkatachalam,et al.  LigandFit: a novel method for the shape-directed rapid docking of ligands to protein active sites. , 2003, Journal of molecular graphics & modelling.

[8]  John Finn,et al.  The identification of quality antibacterial drug discovery targets: a case study with aminoacyl-tRNA synthetases , 2000 .

[9]  J. Risler,et al.  Crystallographic study at 2.5 A resolution of the interaction of methionyl-tRNA synthetase from Escherichia coli with ATP. , 1990, Journal of molecular biology.

[10]  Roberta B Carey,et al.  Invasive methicillin-resistant Staphylococcus aureus infections in the United States. , 2007, JAMA.

[11]  Osman Güner,et al.  Pharmacophore modeling and three dimensional database searching for drug design using catalyst: recent advances. , 2004, Current medicinal chemistry.

[12]  P. Gallant,et al.  Discovery of a potent and selective series of pyrazole bacterial methionyl-tRNA synthetase inhibitors. , 2003, Bioorganic & medicinal chemistry letters.

[13]  Robert E. W. Hancock,et al.  The end of an era? , 2007, Nature Reviews Drug Discovery.