Recent advances in emerging DNA-based methods for genetically modified organisms (GMOs) rapid detection

Abstract Genetically modified organisms (GMOs) has been discussed for many years due to their unknown safety. Different threshold values were set to manage the GMOs in different countries and regions. Besides, the number of GMOs on the market is steadily growing. Hence, there is an urgent need to employ efficient and accurate detection methods for a timely diagnosis of GMOs. DNA-based assays are the mostly used methods and are more popular than protein-based assays due to their convenience and better performance especially for the deep processing crops. However, the efficiency and operation of those traditional DNA-based assays are still low and are not suitable for a timely in field testing. Here, in this critical review, we aimed to take a discussion of those emerging DNA-based methods, which took an innovation in the aspects of detection efficiency, operation process, results diagnosis, etc. We do hope that this review could bring some inspirations for the research of much more simple and efficient detection methods for the GMOs.

[1]  Rebecca Richards-Kortum,et al.  Equipment-Free Incubation of Recombinase Polymerase Amplification Reactions Using Body Heat , 2014, PloS one.

[2]  Tao Xiong,et al.  Visual DNA microarray coupled with multiplex-PCR for the rapid detection of twelve genetically modified maize , 2016, BioChip Journal.

[3]  P. Craw,et al.  Isothermal nucleic acid amplification technologies for point-of-care diagnostics: a critical review. , 2012, Lab on a chip.

[4]  R. Niessner,et al.  Signal-On Photoelectrochemical Immunoassay for Aflatoxin B1 Based on Enzymatic Product-Etching MnO2 Nanosheets for Dissociation of Carbon Dots. , 2017, Analytical chemistry.

[5]  Meijin Li,et al.  Reduced graphene oxide/BiFeO3 nanohybrids-based signal-on photoelectrochemical sensing system for prostate-specific antigen detection coupling with magnetic microfluidic device. , 2018, Biosensors & bioelectronics.

[6]  Younan Xia,et al.  Gold Nanomaterials at Work in Biomedicine. , 2015, Chemical reviews.

[7]  Ming-Shiun Tsai,et al.  Rapid screening of roundup ready soybean in food samples by a hand-held PCR device , 2016, Food Science and Biotechnology.

[8]  Kagan Kerman,et al.  Microchamber array based DNA quantification and specific sequence detection from a single copy via PCR in nanoliter volumes. , 2005, Biosensors & bioelectronics.

[9]  David Dobnik,et al.  Critical assessment of digital PCR for the detection and quantification of genetically modified organisms , 2018, Analytical and Bioanalytical Chemistry.

[10]  Shoji Motomizu,et al.  Trace and ultratrace analysis methods for the determination of phosphorus by flow-injection techniques. , 2005, Talanta.

[11]  Arne Holst-Jensen,et al.  Application of whole genome shotgun sequencing for detection and characterization of genetically modified organisms and derived products , 2016, Analytical and Bioanalytical Chemistry.

[12]  Jiajia Yang,et al.  A DNA probe based on phosphorescent resonance energy transfer for detection of transgenic 35S promoter DNA. , 2017, Biosensors & bioelectronics.

[13]  Jie Zhou,et al.  Isothermal amplified detection of DNA and RNA. , 2014, Molecular bioSystems.

[14]  Valérie Voisin,et al.  Fiber-Optic SPR Immunosensors Tailored To Target Epithelial Cells through Membrane Receptors. , 2015, Analytical chemistry.

[15]  Dabing Zhang,et al.  Visual detection of multiple genetically modified organisms in a capillary array. , 2017, Lab on a chip.

[16]  S H Neoh,et al.  Quantitation of targets for PCR by use of limiting dilution. , 1992, BioTechniques.

[17]  Marie-Alice Fraiture,et al.  How Can We Better Detect Unauthorized GMOs in Food and Feed Chains? , 2017, Trends in biotechnology.

[18]  Bill W Colston,et al.  A reusable flow-through polymerase chain reaction instrument for the continuous monitoring of infectious biological agents. , 2003, Analytical chemistry.

[19]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[20]  S. Yee,et al.  A fiber-optic chemical sensor based on surface plasmon resonance , 1993 .

[21]  Liping Peng,et al.  Auto-microfluidic thin-film chip for genetically modified maize detection , 2017 .

[22]  Dieter Deforce,et al.  Biotech rice: Current developments and future detection challenges in food and feed chain , 2016 .

[23]  Andrea W. Chow,et al.  Lab‐on‐a‐chip: Opportunities for chemical engineering , 2002 .

[24]  Banshi D Gupta,et al.  FO-SPR based dextrose sensor using Ag/ZnO nanorods/GOx for insulinoma detection. , 2016, Biosensors & bioelectronics.

[25]  Sher Ali,et al.  Genetically modified crops: detection strategies and biosafety issues. , 2013, Gene.

[26]  N. Lee,et al.  Miniaturized polymerase chain reaction device for rapid identification of genetically modified organisms , 2015 .

[27]  Kevin Pennings,et al.  Pullulan encapsulation of labile biomolecules to give stable bioassay tablets. , 2014, Angewandte Chemie.

[28]  Wenqiang Lai,et al.  Enzyme-controlled dissolution of MnO2 nanoflakes with enzyme cascade amplification for colorimetric immunoassay. , 2017, Biosensors & bioelectronics.

[29]  Hermann Broll,et al.  New approaches in GMO detection , 2010, Analytical and bioanalytical chemistry.

[30]  L. Piergiovanni,et al.  "Wetting enhancer" pullulan coating for antifog packaging applications. , 2012, ACS applied materials & interfaces.

[31]  Wentao Xu,et al.  Ultrasensitive Single Fluorescence-Labeled Probe-Mediated Single Universal Primer-Multiplex-Droplet Digital Polymerase Chain Reaction for High-Throughput Genetically Modified Organism Screening. , 2018, Analytical chemistry.

[32]  Silvia Francescon The New Directive 2001/18/EC on the Deliberate Release of Genetically Modified Organisms into the Environment: Changes and Perspectives , 2001 .

[33]  Yves Bertheau,et al.  Trends in analytical methodology in food safety and quality: monitoring microorganisms and genetically modified organisms , 2007 .

[34]  C. Carter,et al.  International Approval and Labeling Regulations of Genetically Modified Food in Major Trading Countries , 2006 .

[35]  Y. Jeong,et al.  Characterization of hydrophobized pullulan with various hydrophobicities. , 2003, International journal of pharmaceutics.

[36]  Mojca Milavec,et al.  Quantitative Analysis of Food and Feed Samples with Droplet Digital PCR , 2013, PloS one.

[37]  Y. Ying,et al.  Simple screening strategy with only water bath needed for the identification of insect-resistant genetically modified rice. , 2015, Analytical chemistry.

[38]  Arne Holst-Jensen,et al.  PCR technology for screening and quantification of genetically modified organisms (GMOs) , 2003, Analytical and bioanalytical chemistry.

[39]  Clara Pereira,et al.  Highly Monodisperse Fe3O4@Au Superparamagnetic Nanoparticles as Reproducible Platform for Genosensing Genetically Modified Organisms , 2016 .

[40]  Zhou Chen,et al.  Fiber optic biosensor for detection of genetically modified food based on catalytic hairpin assembly reaction and nanocomposites assisted signal amplification , 2018 .

[41]  Yi Wang,et al.  Magnetic nanoparticle-enhanced biosensor based on grating-coupled surface plasmon resonance. , 2011, Analytical chemistry.

[42]  M. Baker Digital PCR hits its stride , 2012, Nature Methods.

[43]  C. L. Manzanares-Palenzuela,et al.  Biosensors for GMO Testing: Nearly 25 Years of Research , 2018, Critical reviews in analytical chemistry.

[44]  H Schimmel,et al.  Detection and traceability of genetically modified organisms in the food production chain. , 2004, Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association.

[45]  Jian Wu,et al.  On-point detection of GM rice in 20 minutes with pullulan as CPA acceleration additive , 2014 .

[46]  Alexandra S. Whale,et al.  Methods for Applying Accurate Digital PCR Analysis on Low Copy DNA Samples , 2013, PloS one.

[47]  L. Ponti Transgenic Crops and Sustainable Agriculture in the European Context , 2005 .

[48]  R. Miranda-Castro,et al.  Targeting helicase-dependent amplification products with an electrochemical genosensor for reliable and sensitive screening of genetically modified organisms. , 2015, Analytical chemistry.

[49]  Rolf Meyer,et al.  Development and application of DNA analytical methods for the detection of GMOs in food , 1999 .

[50]  C. Delerue-Matos,et al.  Electrochemical genoassays on gold-coated magnetic nanoparticles to quantify genetically modified organisms (GMOs) in food and feed as GMO percentage. , 2018, Biosensors & bioelectronics.

[51]  T. Kutateladze,et al.  New multiplex PCR methods for rapid screening of genetically modified organisms in foods , 2015, Front. Microbiol..

[52]  Philippe Corbisier,et al.  Single molecule detection in nanofluidic digital array enables accurate measurement of DNA copy number , 2009, Analytical and bioanalytical chemistry.

[53]  Yixiang Duan,et al.  Fiber Optic Surface Plasmon Resonance–Based Biosensor Technique: Fabrication, Advancement, and Application , 2016, Critical reviews in analytical chemistry.

[54]  J Lammertyn,et al.  Real-time PCR melting analysis with fiber optic SPR enables multiplex DNA identification of bacteria. , 2016, The Analyst.

[55]  Kun Wang,et al.  Fluorescent "on-off-on" switching sensor based on CdTe quantum dots coupled with multiwalled carbon nanotubes@graphene oxide nanoribbons for simultaneous monitoring of dual foreign DNAs in transgenic soybean. , 2017, Biosensors & bioelectronics.

[56]  D. Lian,et al.  Capillary Electrophoresis Based on Nucleic Acid Detection as Used in Food Analysis. , 2017, Comprehensive reviews in food science and food safety.

[57]  Joanne Macdonald,et al.  Advances in isothermal amplification: novel strategies inspired by biological processes. , 2015, Biosensors & bioelectronics.

[58]  Arne Holst-Jensen,et al.  Multiplex quantification of 12 European Union authorized genetically modified maize lines with droplet digital polymerase chain reaction. , 2015, Analytical chemistry.

[59]  Pradeep Kumar,et al.  Current perspectives on genetically modified crops and detection methods , 2017, 3 Biotech.

[60]  Mostafa Azimzadeh,et al.  Electrochemical Biosensors for Cancer Biomarkers Detection: Recent Advances and Challenges , 2016 .

[61]  L. Piergiovanni,et al.  Ultrasound-assisted pullulan/montmorillonite bionanocomposite coating with high oxygen barrier properties. , 2012, Langmuir : the ACS journal of surfaces and colloids.

[62]  Mary A Arugula,et al.  Biosensors as 21st century technology for detecting genetically modified organisms in food and feed. , 2014, Analytical chemistry.

[63]  Alex van Belkum,et al.  Principles and technical aspects of PCR amplification , 2008 .

[64]  H. Naderi-manesh,et al.  Application of Oracet Blue in a novel and sensitive electrochemical biosensor for the detection of microRNA , 2015 .

[65]  H. Ghanbarian,et al.  A novel electrochemical nanobiosensor for the ultrasensitive and specific detection of femtomolar-level gastric cancer biomarker miRNA-106a , 2016, Beilstein journal of nanotechnology.

[66]  Michael F. Hochella,et al.  Nanotechnology: nature's gift or scientists' brainchild? , 2015 .

[67]  Fang Zhang,et al.  Instant, Visual, and Instrument-Free Method for On-Site Screening of GTS 40-3-2 Soybean Based on Body-Heat Triggered Recombinase Polymerase Amplification. , 2017, Analytical chemistry.

[68]  D. Tang,et al.  Dopamine-Loaded Liposomes for in-Situ Amplified Photoelectrochemical Immunoassay of AFB1 to Enhance Photocurrent of Mn2+-Doped Zn3(OH)2V2O7 Nanobelts. , 2017, Analytical chemistry.

[69]  Yongyi Zeng,et al.  Double Photosystems-Based 'Z-Scheme' Photoelectrochemical Sensing Mode for Ultrasensitive Detection of Disease Biomarker Accompanying Three-Dimensional DNA Walker. , 2018, Analytical chemistry.

[70]  Bartosz A Grzybowski,et al.  The nanotechnology of life-inspired systems. , 2016, Nature nanotechnology.

[71]  K. Kinzler,et al.  Digital PCR. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[72]  Yan Xu,et al.  Helicase‐dependent isothermal DNA amplification , 2004, EMBO reports.

[73]  Navid Nasirizadeh,et al.  A nanobiosensor composed of Exfoliated Graphene Oxide and Gold Nano-Urchins, for detection of GMO products. , 2017, Biosensors & bioelectronics.

[74]  D. Deforce,et al.  Current and New Approaches in GMO Detection: Challenges and Solutions , 2015, BioMed research international.

[75]  María Jesús Lobo-Castañón,et al.  Multiplex electrochemical DNA platform for femtomolar-level quantification of genetically modified soybean. , 2015, Biosensors & bioelectronics.

[76]  Igor L. Medintz,et al.  Single-molecule DNA amplification and analysis in an integrated microfluidic device. , 2001, Analytical chemistry.

[77]  Zhiqiang Gao,et al.  Bioanalytical applications of isothermal nucleic acid amplification techniques. , 2015, Analytica chimica acta.

[78]  Ramesh Ramakrishnan,et al.  Studying copy number variations using a nanofluidic platform , 2008, Nucleic acids research.

[79]  Mostafa Azimzadeh,et al.  An electrochemical nanobiosensor for plasma miRNA-155, based on graphene oxide and gold nanorod, for early detection of breast cancer. , 2016, Biosensors & bioelectronics.

[80]  Ai-ying Zhang,et al.  Nanomaterials for Biosensing Applications , 2016, Nanomaterials.

[81]  Y. Ying,et al.  Counting DNA molecules with visual segment-based readouts in minutes. , 2018, Chemical communications.

[82]  Marta Sánchez-Paniagua López,et al.  Electrochemical genosensors as innovative tools for detection of genetically modified organisms , 2015 .

[83]  P. Corbisier,et al.  Absolute quantification of genetically modified MON810 maize (Zea mays L.) by digital polymerase chain reaction , 2010, Analytical and bioanalytical chemistry.

[84]  J. Homola Surface plasmon resonance sensors for detection of chemical and biological species. , 2008, Chemical reviews.