Cell-Type-Specific Gene Expression Profiling in Adult Mouse Brain Reveals Normal and Disease-State Signatures.

[1]  O. Zaytseva,et al.  DNA Conformation Regulates Gene Expression: The MYC Promoter and Beyond , 2018, BioEssays : news and reviews in molecular, cellular and developmental biology.

[2]  Xiaodong Cheng,et al.  DNA Conformation Induces Adaptable Binding by Tandem Zinc Finger Proteins , 2018, Cell.

[3]  Kevin W. Kelley,et al.  Variation among intact tissue samples reveals the core transcriptional features of human CNS cell classes , 2018, bioRxiv.

[4]  N. Déglon,et al.  The Self-Inactivating KamiCas9 System for the Editing of CNS Disease Genes. , 2017, Cell reports.

[5]  K. Merienne,et al.  Altered enhancer transcription underlies Huntington’s disease striatal transcriptional signature , 2017, Scientific Reports.

[6]  K. Merienne,et al.  Contribution of Neuroepigenetics to Huntington’s Disease , 2017, Front. Hum. Neurosci..

[7]  N. Déglon,et al.  Astrocytes are key but indirect contributors to the development of the symptomatology and pathophysiology of Huntington's disease , 2016, Glia.

[8]  Hui Zhou,et al.  ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data , 2016, Nucleic Acids Res..

[9]  Stephen R Quake,et al.  Cellular Taxonomy of the Mouse Striatum as Revealed by Single-Cell RNA-Seq. , 2016, Cell reports.

[10]  Giovanni Coppola,et al.  Integrated genomics and proteomics to define huntingtin CAG length-dependent networks in HD Mice , 2016, Nature Neuroscience.

[11]  M. Wegner,et al.  Transcription factors Sox5 and Sox6 exert direct and indirect influences on oligodendroglial migration in spinal cord and forebrain , 2016, Glia.

[12]  G. Silberberg,et al.  Local and afferent synaptic pathways in the striatal microcircuitry , 2015, Current Opinion in Neurobiology.

[13]  C. Margulies,et al.  Designing Cell-Type-Specific Genome-wide Experiments. , 2015, Molecular cell.

[14]  Leming Shi,et al.  Integrated microRNA, mRNA, and protein expression profiling reveals microRNA regulatory networks in rat kidney treated with a carcinogenic dose of aristolochic acid , 2015, BMC Genomics.

[15]  Evan Z. Macosko,et al.  Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets , 2015, Cell.

[16]  C. Néri,et al.  Neuronal identity genes regulated by super-enhancers are preferentially down-regulated in the striatum of Huntington's disease mice. , 2015, Human molecular genetics.

[17]  Loyal A. Goff,et al.  DeCoN: Genome-wide Analysis of In Vivo Transcriptional Dynamics during Pyramidal Neuron Fate Selection in Neocortex , 2015, Neuron.

[18]  Matthew E. Ritchie,et al.  limma powers differential expression analyses for RNA-sequencing and microarray studies , 2015, Nucleic acids research.

[19]  L. Galvan,et al.  Possible involvement of self-defense mechanisms in the preferential vulnerability of the striatum in Huntington's disease , 2014, Front. Cell. Neurosci..

[20]  T. Maniatis,et al.  An RNA-Sequencing Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex , 2014, The Journal of Neuroscience.

[21]  Allan R. Jones,et al.  A High-Resolution Spatiotemporal Atlas of Gene Expression of the Developing Mouse Brain , 2014, Neuron.

[22]  U. Sauer,et al.  Laser capture microdissection coupled with on-column extraction LC-MS(n) enables lipidomics of fluorescently labeled Drosophila neurons. , 2014, Analytical chemistry.

[23]  R. Beattie,et al.  miR379–410 cluster miRNAs regulate neurogenesis and neuronal migration by fine‐tuning N‐cadherin , 2014, The EMBO journal.

[24]  Sean D. Mooney,et al.  A Large Scale Huntingtin Protein Interaction Network Implicates Rho GTPase Signaling Pathways in Huntington Disease*♦ , 2014, The Journal of Biological Chemistry.

[25]  C. Gerfen,et al.  GENSAT BAC Cre-Recombinase Driver Lines to Study the Functional Organization of Cerebral Cortical and Basal Ganglia Circuits , 2013, Neuron.

[26]  E. Fraenkel,et al.  Targeting H3K4 trimethylation in Huntington disease , 2013, Proceedings of the National Academy of Sciences.

[27]  K. Muraszko,et al.  Immunohistochemical staining, laser capture microdissection, and filter‐aided sample preparation‐assisted proteomic analysis of target cell populations within tissue samples , 2013, Electrophoresis.

[28]  S. Pradervand,et al.  Comprehensive Expression Analyses of Neural Cell-Type-Specific miRNAs Identify New Determinants of the Specification and Maintenance of Neuronal Phenotypes , 2013, The Journal of Neuroscience.

[29]  Allan R. Jones,et al.  An anatomically comprehensive atlas of the adult human brain transcriptome , 2012, Nature.

[30]  B. Barres,et al.  Genomic Analysis of Reactive Astrogliosis , 2012, The Journal of Neuroscience.

[31]  R. Gronostajski,et al.  Sox9 and NFIA Coordinate a Transcriptional Regulatory Cascade during the Initiation of Gliogenesis , 2012, Neuron.

[32]  Jesse R. Dixon,et al.  Topological Domains in Mammalian Genomes Identified by Analysis of Chromatin Interactions , 2012, Nature.

[33]  R. Montironi,et al.  Laser-assisted Microdissection in Translational Research: Theory, Technical Considerations, and Future Applications , 2012, Applied immunohistochemistry & molecular morphology : AIMM.

[34]  Jean-Philippe Vert,et al.  Large-scale functional RNAi screen in C. elegans identifies genes that regulate the dysfunction of mutant polyglutamine neurons , 2012, BMC Genomics.

[35]  Ruth Luthi-Carter,et al.  What have we learned from gene expression profiles in Huntington's disease? , 2012, Neurobiology of Disease.

[36]  Michael Q. Zhang,et al.  Cell-Type-Based Analysis of MicroRNA Profiles in the Mouse Brain , 2012, Neuron.

[37]  Kristen K. Ade,et al.  An Improved BAC Transgenic Fluorescent Reporter Line for Sensitive and Specific Identification of Striatonigral Medium Spiny Neurons , 2011, Front. Syst. Neurosci..

[38]  P. Magistretti,et al.  Astrocyte–neuron metabolic relationships: for better and for worse , 2011, Trends in Neurosciences.

[39]  Elena Cattaneo,et al.  Molecular mechanisms and potential therapeutical targets in Huntington's disease. , 2010, Physiological reviews.

[40]  Jeffrey H Kordower,et al.  Differential vulnerability of neurons in Huntington’s disease: the role of cell type‐specific features , 2010, Journal of neurochemistry.

[41]  C. Glass,et al.  Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. , 2010, Molecular cell.

[42]  W. Huber,et al.  which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets , 2011 .

[43]  Aaron R. Quinlan,et al.  Bioinformatics Applications Note Genome Analysis Bedtools: a Flexible Suite of Utilities for Comparing Genomic Features , 2022 .

[44]  P. Greengard,et al.  Writing Memories with Light-Addressable Reinforcement Circuitry , 2009, Cell.

[45]  V. Kim,et al.  Regulation of microRNA biogenesis , 2014, Nature Reviews Molecular Cell Biology.

[46]  D. Bartel.  MicroRNAs: Target Recognition and Regulatory Functions , 2009, Cell.

[47]  P. Greengard,et al.  A Translational Profiling Approach for the Molecular Characterization of CNS Cell Types , 2008, Cell.

[48]  P. Greengard,et al.  Resource Application of a Translational Profiling Approach for the Comparative Analysis of CNS Cell Types , 2009 .

[49]  Olivier Armant,et al.  Characterization of the proneural gene regulatory network during mouse telencephalon development , 2008, BMC Biology.

[50]  Y. Xing,et al.  A Transcriptome Database for Astrocytes, Neurons, and Oligodendrocytes: A New Resource for Understanding Brain Development and Function , 2008, The Journal of Neuroscience.

[51]  J. Rothstein,et al.  Variations in Promoter Activity Reveal a Differential Expression and Physiology of Glutamate Transporters by Glia in the Developing and Mature CNS , 2007, The Journal of Neuroscience.

[52]  Eric Raponi,et al.  Zfp423 controls proliferation and differentiation of neural precursors in cerebellar vermis formation , 2006, Proceedings of the National Academy of Sciences.

[53]  Oliver von Ahsen,et al.  Global Transcriptome Analysis of Genetically Identified Neurons in the Adult Cortex , 2006, The Journal of Neuroscience.

[54]  J. Olson,et al.  Regional and cellular gene expression changes in human Huntington's disease brain. , 2006, Human molecular genetics.

[55]  Mary Kay Lobo,et al.  FACS-array profiling of striatal projection neuron subtypes in juvenile and adult mouse brains , 2006, Nature Neuroscience.

[56]  Shiaoching Gong,et al.  A gene expression atlas of the central nervous system based on bacterial artificial chromosomes , 2003, Nature.

[57]  A. Sher,et al.  Analysis of Fractalkine Receptor CX3CR1 Function by Targeted Deletion and Green Fluorescent Protein Reporter Gene Insertion , 2000, Molecular and Cellular Biology.

[58]  R. Y. Tsai,et al.  Cloning and Functional Characterization of Roaz, a Zinc Finger Protein that Interacts with O/E-1 to Regulate Gene Expression: Implications for Olfactory Neuronal Development , 1997, The Journal of Neuroscience.