Low-dose x-ray phase-contrast and absorption CT using equally sloped tomography

Tomographic reconstruction from undersampled and noisy projections is often desirable in transmission CT modalities for purposes of low-dose tomography and fast acquisition imaging. However under such conditions, due to the violation of the Nyquist sampling criteria and the presence of noise, reconstructions with acceptable accuracy may not be possible. Recent experiments in transmission electron tomography and coherent diffraction microscopy have shown that the technique of equally sloped tomography (EST), an exact tomographic method utilizing an oversampling iterative Fourier-based reconstruction, provides more accurate image reconstructions when the number of projections is significantly undersampled relative to filtered back projection and algebraic iterative methods. Here we extend this technique by developing new reconstruction algorithms which allow for the incorporation of advanced mathematical regularization constraints, such as the nonlocal means total variational model, in a manner that is consistent with experimental projections. We then evaluate the resulting image quality of the developed algorithm through simulations and experiments at the European Synchrotron Radiation Facility on image quality phantoms using the x-ray absorption and phase contrast CT modalities. Both our simulation and experimental results have indicated that the method can reduce the number of projections by 60-75% in parallel beam modalities, while achieving comparable or better image quality than the conventional reconstructions. As large-scale and compact synchrotron radiation facilities are currently under rapid development worldwide, the implementation of low-dose x-ray absorption and phase-contrast CT can find broad applications in biology and medicine using these advanced x-ray sources.

[1]  K. Nugent,et al.  Quantitative Phase Imaging Using Hard X Rays. , 1996, Physical review letters.

[2]  Olivier Mathon,et al.  Invited article: the fast readout low noise camera as a versatile x-ray detector for time resolved dispersive extended x-ray absorption fine structure and diffraction studies of dynamic problems in materials science, chemistry, and catalysis. , 2007, The Review of scientific instruments.

[3]  David H. Bailey,et al.  The Fractional Fourier Transform and Applications , 1991, SIAM Rev..

[4]  Emmanuel J. Candès,et al.  Robust uncertainty principles: exact signal reconstruction from highly incomplete frequency information , 2004, IEEE Transactions on Information Theory.

[5]  E L Nickoloff,et al.  A simplified approach for modulation transfer function determinations in computed tomography. , 1985, Medical physics.

[6]  R. E. Carlson,et al.  Monotone Piecewise Cubic Interpolation , 1980 .

[7]  J. Miao,et al.  Equally sloped tomography with oversampling reconstruction , 2005 .

[8]  Gilles Peix,et al.  Hard x-ray phase imaging using simple propagation of a coherent synchrotron radiation beam , 1999 .

[9]  Antony Ware,et al.  Fast Approximate Fourier Transforms for Irregularly Spaced Data , 1998, SIAM Rev..

[10]  P B Hoffer,et al.  Computerized three-dimensional segmented human anatomy. , 1994, Medical physics.

[11]  Yoram Bresler,et al.  A fast and accurate Fourier algorithm for iterative parallel-beam tomography , 1996, IEEE Trans. Image Process..

[12]  J. Bushberg The Essential Physics of Medical Imaging , 2001 .

[13]  Jianwei Miao,et al.  Three-dimensional structure determination from a single view , 2009, Nature.

[14]  R. Lewis,et al.  Medical phase contrast x-ray imaging: current status and future prospects. , 2004, Physics in medicine and biology.

[15]  Atsushi Momose,et al.  Phase–contrast X–ray computed tomography for observing biological soft tissues , 1996, Nature Medicine.

[16]  Jeffrey A. Fessler,et al.  Fourier-based forward and back-projectors in iterative fan-beam tomographic image reconstruction , 2006, 2004 2nd IEEE International Symposium on Biomedical Imaging: Nano to Macro (IEEE Cat No. 04EX821).

[17]  R. Cloutier Tissue Substitutes in Radiation Dosimetry and Measurement. , 1989 .

[18]  J. Miao,et al.  Extending the methodology of X-ray crystallography to allow imaging of micrometre-sized non-crystalline specimens , 1999, Nature.

[19]  G. Herman,et al.  Linograms in Image Reconstruction from Projections , 1987, IEEE Transactions on Medical Imaging.

[20]  G. Herman,et al.  Image reconstruction from linograms: implementation and evaluation. , 1988, IEEE transactions on medical imaging.

[21]  Garth J. Williams,et al.  Keyhole coherent diffractive imaging , 2008 .

[22]  E L Nickoloff,et al.  Measurement of the PSF for a CT scanner: appropriate wire diameter and pixel size. , 1988, Physics in medicine and biology.

[23]  D S Lalush,et al.  Comparison of diffraction-enhanced computed tomography and monochromatic synchrotron radiation computed tomography of human trabecular bone , 2009, Physics in medicine and biology.

[24]  Franz Pfeiffer,et al.  Hard X-ray phase-contrast imaging with the Compact Light Source based on inverse Compton X-rays. , 2009, Journal of synchrotron radiation.

[25]  J. Miao,et al.  Three-dimensional GaN-Ga2O3 core shell structure revealed by x-ray diffraction microscopy. , 2006, Physical review letters.

[26]  Ronald R. Coifman,et al.  A Framework for Discrete Integral Transformations I-The Pseudopolar Fourier Transform , 2008, SIAM J. Sci. Comput..

[27]  Ronald R. Coifman,et al.  A Framework for Discrete Integral Transformations II-The 2D Discrete Radon Transform , 2008, SIAM J. Sci. Comput..

[28]  Augusto Marques Ferreira da Silva,et al.  Efficient NUFFT-based direct Fourier algorithm for fan beam CT reconstruction , 2004, Medical Imaging: Image Processing.

[29]  Stanley Osher,et al.  Development and Optimization of Regularized Tomographic Reconstruction Algorithms Utilizing Equally-Sloped Tomography , 2010, IEEE Transactions on Image Processing.

[30]  Moyed Miften,et al.  Commissioning and clinical implementation of a mega-voltage cone beam CT system for treatment localization. , 2007, Medical physics.

[31]  J. Miao,et al.  Quantitative 3D imaging of whole, unstained cells by using X-ray diffraction microscopy , 2010, Proceedings of the National Academy of Sciences.

[32]  M. van Heel,et al.  Fourier shell correlation threshold criteria. , 2005, Journal of structural biology.

[33]  Jeffrey A. Fessler,et al.  Iterative tomographic image reconstruction using Fourier-based forward and back-projectors , 2004, IEEE Transactions on Medical Imaging.

[34]  Garth J. Williams,et al.  Three-dimensional mapping of a deformation field inside a nanocrystal , 2006, Nature.

[35]  Guy Gilboa,et al.  Nonlocal Operators with Applications to Image Processing , 2008, Multiscale Model. Simul..

[36]  M. Defrise,et al.  Fast reconstruction of 3-D PET data with accurate statistical modeling , 1997, 1997 IEEE Nuclear Science Symposium Conference Record.

[37]  Atsushi Momose,et al.  Phase-contrast x-ray computed tomography for observing biological specimens and organic materials , 1995 .

[38]  Jean-Michel Morel,et al.  A Review of Image Denoising Algorithms, with a New One , 2005, Multiscale Model. Simul..

[39]  J. Frank Electron tomography : methods for three-dimensional visualization of structures in the cell , 2005 .

[40]  Wayne Lawton,et al.  A new polar Fourier transform for computer-aided tomography and spotlight synthetic aperture radar , 1988, IEEE Trans. Acoust. Speech Signal Process..

[41]  Avinash C. Kak,et al.  Principles of computerized tomographic imaging , 2001, Classics in applied mathematics.

[42]  Leslie Greengard,et al.  Accelerating the Nonuniform Fast Fourier Transform , 2004, SIAM Rev..

[43]  Stefaan Vandenberghe,et al.  Fast reconstruction of 3D time-of-flight PET data by axial rebinning and transverse mashing , 2006, Physics in medicine and biology.

[44]  J. Miao,et al.  Phase retrieval from the magnitude of the Fourier transforms of nonperiodic objects , 1998 .

[45]  R. M. Mersereau,et al.  Digital reconstruction of multidimensional signals from their projections , 1974 .

[46]  P. Cloetens,et al.  Quantitative comparison of direct phase retrieval algorithms in in-line phase tomography. , 2008, Medical physics.

[47]  William L. Briggs,et al.  The DFT : An Owner's Manual for the Discrete Fourier Transform , 1987 .

[48]  J. Miao,et al.  Radiation dose reduction and image enhancement in biological imaging through equally-sloped tomography. , 2008, Journal of structural biology.

[49]  Franz Pfeiffer,et al.  X-ray phase radiography and tomography of soft tissue using grating interferometry. , 2008, European journal of radiology.

[50]  Silvia De Francesco,et al.  Efficient NUFFT-based direct Fourier algorithm for fan beam CT reconstruction , 2004, SPIE Medical Imaging.

[51]  L. Rudin,et al.  Nonlinear total variation based noise removal algorithms , 1992 .