Crystal structure of the yeast heterodimeric ADAT2/3 deaminase

[1]  Daniel Büring.  Binding. , 2021, Bulletin of the Medical Library Association.

[2]  E. Phizicky,et al.  Formation of tRNA Wobble Inosine in Humans Is Disrupted by a Millennia-Old Mutation Causing Intellectual Disability , 2019, Molecular and Cellular Biology.

[3]  I. Ruiz-Trillo,et al.  The Expansion of Inosine at the Wobble Position of tRNAs, and Its Role in the Evolution of Proteomes. , 2019, Molecular biology and evolution.

[4]  I. Ruiz-Trillo,et al.  Codon adaptation to tRNAs with Inosine modification at position 34 is widespread among Eukaryotes and present in two Bacterial phyla , 2018, RNA biology.

[5]  Qiang Wang,et al.  Structural basis of N6-adenosine methylation by the METTL3–METTL14 complex , 2016, Nature.

[6]  Peer Bork,et al.  Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees , 2016, Nucleic Acids Res..

[7]  F. Alkuraya,et al.  ADAT3‐related intellectual disability: Further delineation of the phenotype , 2016, American journal of medical genetics. Part A.

[8]  R. Stroud,et al.  Crystal Structure of the Human tRNA m(1)A58 Methyltransferase-tRNA(3)(Lys) Complex: Refolding of Substrate tRNA Allows Access to the Methylation Target. , 2015, Journal of molecular biology.

[9]  Q. Jia,et al.  Crystal structure of E. coli endonuclease V, an essential enzyme for deamination repair , 2015, Scientific Reports.

[10]  O. Reina,et al.  Inosine modifications in human tRNAs are incorporated at the precursor tRNA level , 2015, Nucleic acids research.

[11]  Qs Wang,et al.  The macromolecular crystallography beamline of SSRF , 2015 .

[12]  D. Karcher,et al.  Identification of Enzymes for Adenosine-to-Inosine Editing and Discovery of Cytidine-to-Uridine Editing in Nucleus-Encoded Transfer RNAs of Arabidopsis1[W] , 2014, Plant Physiology.

[13]  Alexandros Stamatakis,et al.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies , 2014, Bioinform..

[14]  B. Dalhus,et al.  Endonuclease V cleaves at inosines in RNA , 2013, Nature Communications.

[15]  Tariq Ahmad Masoodi,et al.  Mutation in ADAT3, encoding adenosine deaminase acting on transfer RNA, causes intellectual disability and strabismus , 2013, Journal of Medical Genetics.

[16]  J. Bujnicki,et al.  MODOMICS: a database of RNA modification pathways—2013 update , 2012, Nucleic Acids Res..

[17]  T. Pan,et al.  A Role for tRNA Modifications in Genome Structure and Codon Usage , 2012, Cell.

[18]  F. Papavasiliou,et al.  The C-terminal end of the Trypanosoma brucei editing deaminase plays a critical role in tRNA binding. , 2011, RNA.

[19]  Vincent B. Chen,et al.  PHENIX: a comprehensive Python-based system for macromolecular structure solution , 2010, Acta crystallographica. Section D, Biological crystallography.

[20]  Peter F. Stadler,et al.  tRNAdb 2009: compilation of tRNA sequences and tRNA genes , 2008, Nucleic Acids Res..

[21]  Tsutomu Suzuki,et al.  Wobble Inosine tRNA Modification Is Essential to Cell Cycle Progression in G1/S and G2/M Transitions in Fission Yeast* , 2007, Journal of Biological Chemistry.

[22]  K. Hwang,et al.  Crystal structure of the tRNA‐specific adenosine deaminase from Streptococcus pyogenes , 2007, Proteins.

[23]  G. Cross,et al.  An adenosine-to-inosine tRNA-editing enzyme that can perform C-to-U deamination of DNA , 2007, Proceedings of the National Academy of Sciences.

[24]  V. Schramm,et al.  Structural and kinetic characterization of Escherichia coli TadA, the wobble-specific tRNA deaminase. , 2006, Biochemistry.

[25]  Raven H. Huang,et al.  Biochemical and structural studies of A-to-I editing by tRNA:A34 deaminases at the wobble position of transfer RNA. , 2005, Biochemistry.

[26]  Y. Bessho,et al.  Crystal Structure of tRNA Adenosine Deaminase (TadA) from Aquifex aeolicus* , 2005, Journal of Biological Chemistry.

[27]  J. Wedekind,et al.  The structure of a yeast RNA-editing deaminase provides insight into the fold and function of activation-induced deaminase and APOBEC-1. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[28]  Robert C. Edgar,et al.  MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.

[29]  W. Keller,et al.  tadA, an essential tRNA‐specific adenosine deaminase from Escherichia coli , 2002, The EMBO journal.

[30]  N. Sreerama,et al.  Estimation of protein secondary structure from circular dichroism spectra: comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set. , 2000, Analytical biochemistry.

[31]  W. Keller,et al.  An adenosine deaminase that generates inosine at the wobble position of tRNAs. , 1999, Science.

[32]  S. Auxilien,et al.  Mechanism, specificity and general properties of the yeast enzyme catalysing the formation of inosine 34 in the anticodon of transfer RNA. , 1996, Journal of molecular biology.

[33]  H. Grosjean,et al.  Enzymatic conversion of adenosine to inosine in the wobble position of yeast tRNAAsp: the dependence on the anticodon sequence. , 1984, Nucleic acids research.

[34]  F. Crick.  Codon--anticodon pairing: the wobble hypothesis. , 1966, Journal of molecular biology.

[35]  B. Masquida,et al.  Synthesis of RNA by in vitro transcription. , 2011, Methods in molecular biology.

[36]  G. Verdine,et al.  Crystal structure of Staphylococcus aureus tRNA adenosine deaminase TadA in complex with RNA , 2006, Nature Structural &Molecular Biology.

[37]  Hilde van der Togt,et al.  Publisher's Note , 2003, J. Netw. Comput. Appl..

[38]  Karen N. Allen,et al.  research papers Acta Crystallographica Section D Biological , 2003 .

[39]  S J Wodak,et al.  SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model. , 1999, Acta crystallographica. Section D, Biological crystallography.

[40]  Z. Otwinowski,et al.  Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.

[41]  Z. Otwinowski,et al.  [20] Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.