Studies in alkaptonuria reveal new roles beyond drug clearance for phase I and II biotransformations in tyrosine metabolism

Background and Purpose alkaptonuria (AKU) is an inherited disorder of tyrosine metabolism caused by lack of the enzyme homogentisate 1,2-dioxygenase (HGD). The primary biochemical consequence of HGD-deficiency is increased circulating homogentisic acid (HGA), which is central to AKU disease pathology. The aim of this study was to investigate the wider metabolic consequences of targeted Hgd disruption. Experimental Approach the first metabolomic analysis of the Hgd−/− AKU mouse model was performed. Urinary metabolites altered in Hgd−/− were further validated by showing that the HGA-lowering drug nitisinone reversed their direction of alteration in AKU Key Results comparison of Hgd−/− (AKU) versus Hgd+/− (heterozygous control) urine revealed increases in HGA and a group of 8 previously unreported HGA-derived transformation products from phase I and II metabolism. HGA biotransformation products HGA-sulfate, HGA-glucuronide, HGA-hydrate and hydroxymethyl-HGA were also decreased in urine from both mice and patients with AKU on the HGA-lowering agent nitisinone. Hgd knockout also revealed a host of previously unrecognised associations between tyrosine, purine and TCA cycle metabolic pathways. Conclusion and Implications AKU is rare, but our findings further what is currently understood about tyrosine metabolism more generally, and show for the first time that phase I and II detoxification is recruited to prevent accumulation of endogenously-produced metabolites in inborn errors of metabolism. The data highlight the misconception that phase I and II metabolic biotransformations are reserved solely for drug clearance; these are ancient mechanisms, which represent new potential treatment targets in inherited metabolic diseases. Bullet point summary What is already known Increased circulating homogentisic acid is central to disease pathology in the inherited metabolic disease alkaptonuria The Hgd knockout mouse, created in our laboratory, accurately models human alkaptonuria What this study adds Phase I and II biotransformations are recruited in alkaptonuria for detoxification of homogentisic acid These data challenge misconceptions that phase I and II metabolism is solely for drug clearance Clinical significance Phase I and II metabolic processes represent new treatment targets in inherited metabolic diseases The molecular pathology of AKU extends much further than the known alteration to tyrosine metabolism

[1]  H. Oschkinat,et al.  Inside Cover: Pigmentation Chemistry and Radical‐Based Collagen Degradation in Alkaptonuria and Osteoarthritic Cartilage (Angew. Chem. Int. Ed. 29/2020) , 2020 .

[2]  H. Oschkinat,et al.  Pigmentation Chemistry and Radical‐Based Collagen Degradation in Alkaptonuria and Osteoarthritic Cartilage , 2020, Angewandte Chemie.

[3]  George Bou-Gharios,et al.  Conditional targeting in mice reveals that hepatic homogentisate 1,2-dioxygenase activity is essential in reducing circulating homogentisic acid and for effective therapy in the genetic disease alkaptonuria , 2019, Human molecular genetics.

[4]  A. Milan,et al.  Evaluation of the serum metabolome of patients with alkaptonuria before and after two years of treatment with nitisinone using LC‐QTOF‐MS , 2019, JIMD reports.

[5]  George Bou-Gharios,et al.  Correction to: Assessing the effect of nitisinone induced hypertyrosinaemia on monoamine neurotransmitters in brain tissue from a murine model of alkaptonuria using mass spectrometry imaging , 2019, Metabolomics.

[6]  George Bou-Gharios,et al.  Assessing the effect of nitisinone induced hypertyrosinaemia on monoamine neurotransmitters in brain tissue from a murine model of alkaptonuria using mass spectrometry imaging , 2019, Metabolomics.

[7]  J. Jarvis,et al.  A Comprehensive LC-QTOF-MS Metabolic Phenotyping Strategy: Application to Alkaptonuria. , 2019, Clinical chemistry.

[8]  A. Milan,et al.  Nitisinone arrests ochronosis and decreases rate of progression of Alkaptonuria: Evaluation of the effect of nitisinone in the United Kingdom National Alkaptonuria Centre. , 2018, Molecular genetics and metabolism.

[9]  B. Kestenbaum,et al.  Metabolomics and Gene Expression Analysis Reveal Down-regulation of the Citric Acid (TCA) Cycle in Non-diabetic CKD Patients , 2017, EBioMedicine.

[10]  Eun Jig Lee,et al.  4-Hydroxybenzaldehyde accelerates acute wound healing through activation of focal adhesion signalling in keratinocytes , 2017, Scientific Reports.

[11]  L. Ranganath,et al.  The effect of nitisinone on homogentisic acid and tyrosine: a two-year survey of patients attending the National Alkaptonuria Centre, Liverpool , 2017, Annals of clinical biochemistry.

[12]  Lihui Men,et al.  Metabolomics insights into diabetes nephropathy and protective effects of Radix Scutellariae on rats using ultra-high performance liquid chromatography coupled with quadrupole time-of-flight mass spectrometry , 2017 .

[13]  L. Ranganath,et al.  Acute fatal metabolic complications in alkaptonuria , 2016, Journal of Inherited Metabolic Disease.

[14]  F. Cotton,et al.  Renal and prostate stones composition in alkaptonuria: a case report. , 2015, Clinical nephrology.

[15]  Annalisa Santucci,et al.  Oxidative stress and mechanisms of ochronosis in alkaptonuria. , 2015, Free radical biology & medicine.

[16]  N. Vaziri,et al.  Metabolomics insights into chronic kidney disease and modulatory effect of rhubarb against tubulointerstitial fibrosis , 2015, Scientific Reports.

[17]  Huwei Liu,et al.  Metabolomics Approach Reveals Integrated Metabolic Network Associated with Serotonin Deficiency , 2015, Scientific Reports.

[18]  S. Joshua Swamidass,et al.  Modeling Epoxidation of Drug-like Molecules with a Deep Machine Learning Network , 2015, ACS central science.

[19]  J. Jarvis,et al.  Nitisinone Arrests but Does Not Reverse Ochronosis in Alkaptonuric Mice. , 2015, JIMD reports.

[20]  A. Davies,et al.  Untargeted UPLC-MS Profiling Pipeline to Expand Tissue Metabolome Coverage: Application to Cardiovascular Disease , 2015, Analytical chemistry.

[21]  L. Ranganath,et al.  Serum markers in alkaptonuria: simultaneous analysis of homogentisic acid, tyrosine and nitisinone by liquid chromatography tandem mass spectrometry , 2015, Annals of clinical biochemistry.

[22]  A. Chakrapani,et al.  Outcome of children with hereditary tyrosinaemia following newborn screening , 2015, Archives of Disease in Childhood.

[23]  Andrea Zatkova,et al.  Suitability Of Nitisinone In Alkaptonuria 1 (SONIA 1): an international, multicentre, randomised, open-label, no-treatment controlled, parallel-group, dose-response study to investigate the effect of once daily nitisinone on 24-h urinary homogentisic acid excretion in patients with alkaptonuria afte , 2014, Annals of the rheumatic diseases.

[24]  L. Ranganath,et al.  Urine homogentisic acid and tyrosine: simultaneous analysis by liquid chromatography tandem mass spectrometry. , 2014, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[25]  Noffisat O. Oki,et al.  Alterations in metabolic pathways and networks in Alzheimer's disease , 2013, Translational Psychiatry.

[26]  Dominic P. Williams,et al.  Ochronotic osteoarthropathy in a mouse model of alkaptonuria, and its inhibition by nitisinone , 2013, Annals of the rheumatic diseases.

[27]  J. Jarvis,et al.  Recent advances in management of alkaptonuria (invited review; best practice article) , 2013, Journal of Clinical Pathology.

[28]  Dominic P. Williams,et al.  Pharmacological and Toxicological Considerations of Homogentisic Acid in Alkaptonuria , 2012 .

[29]  K. Knights,et al.  Amino Acid Conjugation: A Novel Route of Xenobiotic Carboxylic Acid Metabolism in Man , 2011 .

[30]  A. Boyde,et al.  The role of calcified cartilage and subchondral bone in the initiation and progression of ochronotic arthropathy in alkaptonuria. , 2011, Arthritis and rheumatism.

[31]  J. Troendle,et al.  A 3-year randomized therapeutic trial of nitisinone in alkaptonuria. , 2011, Molecular genetics and metabolism.

[32]  A. Zatkova,et al.  An update on molecular genetics of Alkaptonuria (AKU) , 2011, Journal of Inherited Metabolic Disease.

[33]  Xianlin Han,et al.  Metabolomic changes in autopsy-confirmed Alzheimer's disease , 2011, Alzheimer's & Dementia.

[34]  M. Keshavan,et al.  Homeostatic Imbalance of Purine Catabolism in First-Episode Neuroleptic-Naïve Patients with Schizophrenia , 2010, PloS one.

[35]  T. Helliwell,et al.  Alkaptonuria – a review of surgical and autopsy pathology , 2008, Histopathology.

[36]  K. Knights,et al.  Amino acid conjugation: contribution to the metabolism and toxicity of xenobiotic carboxylic acids , 2007, Expert opinion on drug metabolism & toxicology.

[37]  William A Gahl,et al.  Natural history of alkaptonuria. , 2002, The New England journal of medicine.

[38]  A. Moskowitz,et al.  Purine catabolism: links to mitochondrial respiration and antioxidant defenses? , 1999, Archives of biochemistry and biophysics.

[39]  J. Fahey,et al.  Antioxidant functions of sulforaphane: a potent inducer of Phase II detoxication enzymes. , 1999, Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association.

[40]  U. Nayak,et al.  Homogentisic acid and structurally related compounds as intermediates in plasma soluble melanin formation and in tissue toxicities. , 1994, Archives internationales de physiologie, de biochimie et de biophysique.

[41]  G. Siest,et al.  The UDP glucuronosyltransferase gene superfamily: suggested nomenclature based on evolutionary divergence. , 1991, DNA and cell biology.

[42]  P. Talalay,et al.  Identification of a common chemical signal regulating the induction of enzymes that protect against chemical carcinogenesis. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[43]  T. Woolf,et al.  Basic Concepts in Drug Metabolism: Part II , 1987, Journal of clinical pharmacology.

[44]  T. Woolf,et al.  Basic Concepts in Drug Metabolism: Part I , 1987, Journal of clinical pharmacology.

[45]  R. T. Williams THE METABOLISM OF CERTAIN DRUGS AND FOOD CHEMICALS IN MAN * , 1971, Annals of the New York Academy of Sciences.

[46]  L. Ranganath,et al.  Assessment of the Effect of Once Daily Nitisinone Therapy on 24-h Urinary Metadrenalines and 5-Hydroxyindole Acetic Acid Excretion in Patients with Alkaptonuria After 4 Weeks of Treatment. , 2018, JIMD reports.

[47]  L. Ranganath,et al.  Serum Amino Acid Profiling in Patients with Alkaptonuria Before and After Treatment with Nitisinone. , 2018, JIMD reports.

[48]  L. Ranganath,et al.  Relationship Between Serum Concentrations of Nitisinone and Its Effect on Homogentisic Acid and Tyrosine in Patients with Alkaptonuria. , 2015, JIMD reports.

[49]  Alexander V. Lyubimov,et al.  Encyclopedia of drug metabolism and interactions , 2012 .

[50]  A. Kalgutkar,et al.  Reactive Electrophiles and Metabolic Activation , 2010 .

[51]  D. Assimos,et al.  Hypocitraturia: pathophysiology and medical management. , 2009, Reviews in urology.

[52]  R. Tukey,et al.  Human UDP-glucuronosyltransferases: metabolism, expression, and disease. , 2000, Annual review of pharmacology and toxicology.

[53]  S. R. Spencer,et al.  The electrophile counterattack response: protection against neoplasia and toxicity. , 1993, Advances in enzyme regulation.

[54]  T. Woolf,et al.  Basic concepts in drug metabolism.II , 1987 .