Cdc7-Dbf4 kinase overexpression in multiple cancers and tumor cell lines is correlated with p53 inactivation.

Cdc7 is a conserved serine/threonine kinase essential for the initiation of DNA replication, likely by activating the MCM DNA helicase at the G(1-) to S-phase transition. Cdc7 kinase activity requires association with its regulatory subunit Dbf4/activator of S-phase kinase. Cdc7-Dbf4 is also downstream of the conserved Ataxia telangectasia and RAD3-related kinase that responds to stalled replication forks or DNA damage. In this study, we found that Cdc7 protein was very low or undetectable in normal tissues and cell lines but had increased expression in approximately 50% of the 62 human tumor cell lines we examined. Most cell lines with increased Cdc7 protein levels also had increased Dbf4 abundance, and some tumor cell lines had extra copies of the DBF4 gene. A high expression of Cdc7 protein was also detected in primary breast, colon, and lung tumors but not in the matched normal tissues. We also found a high correlation between p53 loss and increased CDC7 and DBF4 expression in primary breast cancers (P = 3.6 x 10(-9) and 1.8 x 10(-10), respectively) and in the cancer cell lines we studied. Therefore, increased Cdc7-Dbf4 abundance may be a common occurrence in human malignancies.

[1]  Jean YH Yang,et al.  Bioconductor: open software development for computational biology and bioinformatics , 2004, Genome Biology.

[2]  K. Kinzler,et al.  Requirement for p53 and p21 to sustain G2 arrest after DNA damage. , 1998, Science.

[3]  O. Sheils,et al.  Quantitation of CDC6 and MCM5 mRNA in cervical intraepithelial neoplasia and invasive squamous cell carcinoma of the cervix , 2005, Modern Pathology.

[4]  M. Schmid,et al.  Identification and characterization of mouse homologue to yeast Cdc7 protein and chromosomal localization of the cognate mouse gene Cdc7l , 1999, Chromosoma.

[5]  P. Scacheri,et al.  nimO, an Aspergillus gene related to budding yeast Dbf4, is required for DNA synthesis and mitotic checkpoint control. , 1999, Journal of cell science.

[6]  K. Arai,et al.  Human and Xenopus cDNAs encoding budding yeast Cdc7‐related kinases: in vitro phosphorylation of MCM subunits by a putative human homologue of Cdc7 , 1997, The EMBO journal.

[7]  J. Hegemann,et al.  Identification and functional characterization of ASK/Dbf4, a novel cell survival gene in cutaneous melanoma with prognostic relevance. , 2007, Carcinogenesis.

[8]  J. Walter,et al.  Cdc7-Drf1 is a developmentally regulated protein kinase required for the initiation of vertebrate DNA replication. , 2005, Genes & development.

[9]  D. Juric,et al.  Regional activation of chromosomal arm 7q with and without gene amplification in taxane‐selected human ovarian cancer cell lines , 2006, Genes, chromosomes & cancer.

[10]  L. Li,et al.  Extended survivability of prostate cancer cells in the absence of trophic factors: increased proliferation, evasion of apoptosis, and the role of apoptosis proteins. , 1998, Cancer research.

[11]  Anindya Dutta,et al.  DNA replication in eukaryotic cells. , 2002, Annual review of biochemistry.

[12]  G. Williams,et al.  Improved cervical smear assessment using antibodies against proteins that regulate DNA replication. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[13]  W. Dunphy,et al.  Xenopus Drf1, a Regulator of Cdc7, Displays Checkpoint-dependent Accumulation on Chromatin during an S-phase Arrest* , 2003, Journal of Biological Chemistry.

[14]  R. Bosotti,et al.  Drf1, a novel regulatory subunit for human Cdc7 kinase , 2002, The EMBO journal.

[15]  Christian A. Rees,et al.  Systematic variation in gene expression patterns in human cancer cell lines , 2000, Nature Genetics.

[16]  Vassilis G Gorgoulis,et al.  Overexpression of the replication licensing regulators hCdt1 and hCdc6 characterizes a subset of non-small-cell lung carcinomas: synergistic effect with mutant p53 on tumor growth and chromosomal instability--evidence of E2F-1 transcriptional control over hCdt1. , 2004, The American journal of pathology.

[17]  D. Botstein,et al.  A gene expression database for the molecular pharmacology of cancer , 2000, Nature Genetics.

[18]  R. Hollingsworth,et al.  A human homolog of the yeast CDC7 gene is overexpressed in some tumors and transformed cell lines. , 1998, Gene.

[19]  D. McDonald,et al.  Mammalian Cdc7–Dbf4 protein kinase complex is essential for initiation of DNA replication , 1999, The EMBO journal.

[20]  J. Tower,et al.  The Drosophila chiffon gene is required for chorion gene amplification, and is related to the yeast Dbf4 regulator of DNA replication and cell cycle. , 1999, Development.

[21]  K. Stoeber,et al.  Diagnosis of genito-urinary tract cancer by detection of minichromosome maintenance 5 protein in urine sediments. , 2002, Journal of the National Cancer Institute.

[22]  T. Miyake,et al.  A Fission Yeast Gene,him1+/dfp1+, Encoding a Regulatory Subunit for Hsk1 Kinase, Plays Essential Roles in S-Phase Initiation as Well as in S-Phase Checkpoint Control and Recovery from DNA Damage , 1999, Molecular and Cellular Biology.

[23]  R. Sclafani Cdc7p-Dbf4p becomes famous in the cell cycle. , 2000, Journal of cell science.

[24]  J. Gautier,et al.  Single-Strand DNA Gaps Trigger an ATR- and Cdc7-Dependent Checkpoint , 2003, Cell cycle.

[25]  R. Paules,et al.  Cdc7-Dbf4 and the Human S Checkpoint Response to UVC* , 2007, Journal of Biological Chemistry.

[26]  J. Ibrahim,et al.  Defective cell cycle checkpoint functions in melanoma are associated with altered patterns of gene expression. , 2008, The Journal of investigative dermatology.

[27]  M. Monga,et al.  Developmental Therapeutics Program at the NCI: molecular target and drug discovery process , 2002, Leukemia.

[28]  B. Stillman,et al.  Cdc7p–Dbf4p kinase binds to chromatin during S phase and is regulated by both the APC and the RAD53 checkpoint pathway , 1999, The EMBO journal.

[29]  K. Arai,et al.  Cell cycle regulation of chromatin binding and nuclear localization of human Cdc7‐ASK kinase complex , 2003, Genes to cells : devoted to molecular & cellular mechanisms.

[30]  Joshy George,et al.  Genetic reclassification of histologic grade delineates new clinical subtypes of breast cancer. , 2006, Cancer research.

[31]  J. Mesirov,et al.  Chemosensitivity prediction by transcriptional profiling , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[32]  K Stoeber,et al.  Aberrant expression of minichromosome maintenance proteins 2 and 5, and Ki-67 in dysplastic squamous oesophageal epithelium and Barrett's mucosa , 2002, Gut.

[33]  Y. Chen,et al.  Comparative genomic hybridization analysis of 38 breast cancer cell lines: a basis for interpreting complementary DNA microarray data. , 2000, Cancer research.

[34]  B. King,et al.  p16INK4A, CDC6, and MCM5: predictive biomarkers in cervical preinvasive neoplasia and cervical cancer , 2005, Journal of Clinical Pathology.

[35]  K. Stoeber,et al.  Immunoassay for urothelial cancers that detects DNA replication protein Mcm5 in urine , 1999, The Lancet.

[36]  E. Birney,et al.  Patterns of somatic mutation in human cancer genomes , 2007, Nature.

[37]  L. Hartwell,et al.  Three Additional Genes Required for Deoxyribonucleic Acid Synthesis in Saccharomyces cerevisiae , 1973, Journal of bacteriology.

[38]  P. Korkolopoulou,et al.  Minichromosome maintenance proteins 2 and 5 expression in muscle-invasive urothelial cancer: a multivariate survival study including proliferation markers and cell cycle regulators. , 2005, Human pathology.

[39]  Ross Ihaka,et al.  Gentleman R: R: A language for data analysis and graphics , 1996 .

[40]  J. Weinstein,et al.  Karyotypic complexity of the NCI-60 drug-screening panel. , 2003, Cancer research.

[41]  K. Coombes,et al.  Identification of Cell Cycle Regulatory Genes as Principal Targets of p53-mediated Transcriptional Repression* , 2006, Journal of Biological Chemistry.

[42]  Richard Lugg,et al.  Mutation analysis of 24 known cancer genes in the NCI-60 cell line set , 2006, Molecular Cancer Therapeutics.

[43]  E. Lees,et al.  A Novel Growth- and Cell Cycle-Regulated Protein, ASK, Activates Human Cdc7-Related Kinase and Is Essential for G1/S Transition in Mammalian Cells , 1999, Molecular and Cellular Biology.

[44]  Hoyun Lee,et al.  High levels of Cdc7 and Dbf4 proteins can arrest cell-cycle progression. , 2005, European journal of cell biology.

[45]  Alex E. Lash,et al.  Gene Expression Omnibus: NCBI gene expression and hybridization array data repository , 2002, Nucleic Acids Res..

[46]  R. Myers,et al.  Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data , 2005, Nucleic acids research.

[47]  G. Parmigiani,et al.  Mutational Analysis of the Tyrosine Kinome in Colorectal Cancers , 2003, Science.

[48]  N. Haites,et al.  Genomic changes identified by comparative genomic hybridisation in docetaxel-resistant breast cancer cell lines. , 2005, European journal of cancer.

[49]  J. Gautier,et al.  An ATR- and Cdc7-dependent DNA damage checkpoint that inhibits initiation of DNA replication. , 2003, Molecular cell.

[50]  M. Cohen,et al.  Fas-mediated apoptosis in human prostatic carcinoma cell lines. , 1997, Cancer research.

[51]  S. Ficarro,et al.  Essential role of phosphorylation of MCM2 by Cdc7/Dbf4 in the initiation of DNA replication in mammalian cells. , 2006, Molecular biology of the cell.

[52]  K. Arai,et al.  Inactivation of Cdc7 kinase in mouse ES cells results in S‐phase arrest and p53‐dependent cell death , 2002, The EMBO journal.

[53]  P. Hall,et al.  An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[54]  Dana Ravid,et al.  A case study in misidentification of cancer cell lines: MCF-7/AdrR cells (re-designated NCI/ADR-RES) are derived from OVCAR-8 human ovarian carcinoma cells. , 2007, Cancer letters.

[55]  J. Hurwitz,et al.  CDC7 kinase phosphorylates serine residues adjacent to acidic amino acids in the minichromosome maintenance 2 protein. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[56]  L. Johnston,et al.  A further two mutants defective in initiation of the S phase in the yeastSaccharomyces cerevisiae , 2004, Molecular and General Genetics MGG.

[57]  A. Montagnoli,et al.  Cdc7 Inhibition Reveals a p53-Dependent Replication Checkpoint That Is Defective in Cancer Cells , 2004, Cancer Research.