IL-13 decreases susceptibility to airway epithelial SARS-CoV-2 infection but increases disease severity in vivo

Treatments available to prevent progression of virus-induced lung diseases, including coronavirus disease 2019 (COVID-19) are of limited benefit once respiratory failure occurs. The efficacy of approved and emerging cytokine signaling-modulating antibodies is variable and is affected by disease course and patient-specific inflammation patterns. Therefore, understanding the role of inflammation on the viral infectious cycle is critical for effective use of cytokine-modulating agents. We investigated the role of the type 2 cytokine IL-13 on SARS-CoV-2 binding/entry, replication, and host response in primary HAE cells in vitro and in a model of mouse-adapted SARS-CoV-2 infection in vivo. IL-13 protected airway epithelial cells from SARS-CoV-2 infection in vitro by decreasing the abundance of ACE2- expressing ciliated cells rather than by neutralization in the airway surface liquid or by interferon-mediated antiviral effects. In contrast, IL-13 worsened disease severity in mice; the effects were mediated by eicosanoid signaling and were abolished in mice deficient in the phospholipase A2 enzyme PLA2G2D. We conclude that IL-13-induced inflammation differentially affects multiple steps of COVID-19 pathogenesis. IL-13-induced inflammation may be protective against initial SARS-CoV-2 airway epithelial infection; however, it enhances disease progression in vivo. Blockade of IL-13 and/or eicosanoid signaling may be protective against progression to severe respiratory virus-induced lung disease. RESEARCH IN CONTEXT Evidence before this study Prior to this study, various pieces of evidence indicated the significant role of cytokines in the pathogenesis and progression of COVID-19. Severe COVID-19 cases were marked by cytokine storm syndrome, leading to immune activation and hyperinflammation. Treatments aimed at modulating cytokine signaling, such as IL-6 receptor antagonists, had shown moderate effects in managing severe COVID-19 cases. Studies also revealed an excessive production of type 2 cytokines, particularly IL-13 and IL-4, in the plasma and lungs of COVID-19 patients, which was associated with adverse outcomes. Treatment with anti-IL-13 monoclonal antibodies improved survival following SARS-CoV-2 infection, suggesting that IL-13 plays a role in disease severity. Type 2 cytokines were observed to potentially suppress type 1 responses, essential for viral clearance, and imbalances between these cytokine types were linked to negative COVID-19 outcomes. These findings highlighted the complex interactions between cytokines and the immune response during viral infections, underscoring the importance of understanding IL-13’s role in COVID-19 and related lung diseases for developing effective therapeutic interventions. Added value of this study In this study, we explored the impact of IL-13-induced inflammation on various stages of the SARS-CoV-2 infection cycle using both murine (in vivo) and primary human airway epithelial (in vitro) culture models. Our findings indicated that IL-13 provided protection to airway epithelial cells against SARS-CoV-2 infection in vitro, partly by reducing the number of ACE2- expressing ciliated cells. Conversely, IL-13 exacerbated the severity of SARS2-N501YMA30-induced disease in mice, primarily through Pla2g2d-mediated eicosanoid biosynthesis. Implications of the available evidence Current evidence indicates that PLA2G2D plays a crucial role in the IL-13-driven exacerbation of COVID-19 in mice, suggesting that targeting the IL-13-PLA2G2D axis could help protect against SARS-CoV-2 infection. These insights are important for clinical research, especially for studies focusing on drugs that modify IL-13 signaling or modulate eicosanoids in the treatment of asthma and respiratory virus-induced lung diseases.

[1]  C. Wohlford-Lenane,et al.  IL-13 induced inflammation increases DPP4 abundance but does not enhance MERS-CoV replication in airway epithelia. , 2023, The Journal of infectious diseases.

[2]  H. Haughey,et al.  Pulmonary function and survival one year after dupilumab treatment of acute moderate to severe COVID-19: A follow up study from a Phase IIa trial , 2023, medRxiv.

[3]  Á. Lanas,et al.  Serum lipid mediator profiles in COVID-19 patients and lung disease severity: a pilot study , 2023, Scientific reports.

[4]  M. Welsh,et al.  Inflammation as a Regulator of the Airway Surface Liquid pH in Cystic Fibrosis , 2023, Cells.

[5]  Matthew C. Altman,et al.  Type 2 inflammation reduces SARS-CoV-2 replication in the airway epithelium in allergic asthma through functional alteration of ciliated epithelial cells , 2023, Journal of Allergy and Clinical Immunology.

[6]  N. Haddock,et al.  Hyaluronan in the pathogenesis of acute and post-acute COVID-19 infection , 2023, Matrix Biology.

[7]  R. Gandhi,et al.  Nirmatrelvir Plus Ritonavir for Early COVID-19 in a Large U.S. Health System , 2022, Annals of Internal Medicine.

[8]  Garry P. Nolan,et al.  SARS-CoV-2 replication in airway epithelia requires motile cilia and microvillar reprogramming , 2022, Cell.

[9]  N. Cohen,et al.  Infection of primary nasal epithelial cells differentiates among lethal and seasonal human coronaviruses , 2022, bioRxiv.

[10]  Linli Li,et al.  Mesenchymal Stem Cells and Their Small Extracellular Vesicles as Crucial Immunological Efficacy for Hepatic Diseases , 2022, Frontiers in Immunology.

[11]  R. Preissner,et al.  Dupilumab Use Is Associated With Protection From Coronavirus Disease 2019 Mortality: A Retrospective Analysis , 2022, medRxiv.

[12]  R. Baric,et al.  SARS-CoV-2 infection of airway cells causes intense viral and cell shedding, two spreading mechanisms affected by IL-13 , 2022, Proceedings of the National Academy of Sciences of the United States of America.

[13]  Kristen Fortney,et al.  Eicosanoid signalling blockade protects middle-aged mice from severe COVID-19 , 2022, Nature.

[14]  O. Cabrera-Marante,et al.  An Early Th1 Response Is a Key Factor for a Favorable COVID-19 Evolution , 2022, Biomedicines.

[15]  S. Al‐Muhsen,et al.  Asthma Associated Cytokines Regulate the Expression of SARS-CoV-2 Receptor ACE2 in the Lung Tissue of Asthmatic Patients , 2022, Frontiers in Immunology.

[16]  D. Erle,et al.  The Type 2 Asthma Mediator IL-13 Inhibits Severe Acute Respiratory Syndrome Coronavirus 2 Infection of Bronchial Epithelium , 2022, American Journal of Respiratory Cell and Molecular Biology.

[17]  F. Niyonsaba,et al.  Psoriatic lesional expression of SARS-CoV-2 receptor ACE2 is reduced by blockade of IL-17 signaling but not by other biologic treatments , 2022, Journal of the American Academy of Dermatology.

[18]  F. Ginhoux,et al.  Differential Effects of Prostaglandin D2 Signaling on Macrophages and Microglia in Murine Coronavirus Encephalomyelitis , 2021, mBio.

[19]  A. Schambach,et al.  Impaired immune response mediated by prostaglandin E2 promotes severe COVID-19 disease , 2021, PloS one.

[20]  S. Kim-Schulze,et al.  Th2/Th1 Cytokine Imbalance Is Associated With Higher COVID-19 Risk Mortality , 2021, Frontiers in Genetics.

[21]  M. Matthay,et al.  IL-6 Receptor Antagonist Therapy for Patients Hospitalized for COVID-19: Who, When, and How? , 2021, JAMA.

[22]  N. Flamand,et al.  Chemokines and eicosanoids fuel the hyperinflammation within the lungs of patients with severe COVID-19 , 2021, Journal of Allergy and Clinical Immunology.

[23]  M. Gelb,et al.  Coronavirus-specific antibody production in middle-aged mice requires phospholipase A2G2D. , 2021, The Journal of clinical investigation.

[24]  N. Flamand,et al.  High levels of eicosanoids and docosanoids in the lungs of intubated COVID‐19 patients , 2021, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[25]  S. Naser,et al.  Anti-TNF-α agents Modulate SARS-CoV-2 Receptors and Increase the Risk of Infection Through Notch-1 Signaling , 2021, Frontiers in Immunology.

[26]  Cameron R. Wolfe,et al.  Baricitinib plus Remdesivir for Hospitalized Adults with Covid-19 , 2020, The New England journal of medicine.

[27]  Melody M. H. Li,et al.  All About the RNA: Interferon-Stimulated Genes That Interfere With Viral RNA Processes , 2020, Frontiers in Immunology.

[28]  Xiaoyu Qi,et al.  Injecting Immunosuppressive M2 Macrophages Alleviates the Symptoms of Periodontitis in Mice , 2020, Frontiers in Molecular Biosciences.

[29]  G. Abecasis,et al.  Type 2 and interferon inflammation regulate SARS-CoV-2 entry factor expression in the airway epithelium , 2020, Nature Communications.

[30]  J. Hamilton,et al.  GM-CSF: A Promising Target in Inflammation and Autoimmunity , 2020, ImmunoTargets and therapy.

[31]  Arthur S Slutsky,et al.  Association Between Administration of Systemic Corticosteroids and Mortality Among Critically Ill Patients With COVID-19: A Meta-analysis. , 2020, JAMA.

[32]  Shamus P. Keeler,et al.  Replication-Competent Vesicular Stomatitis Virus Vaccine Vector Protects against SARS-CoV-2-Mediated Pathogenesis in Mice , 2020, Cell Host & Microbe.

[33]  A. Gow,et al.  Potential benefits and risks of omega-3 fatty acids supplementation to patients with COVID-19 , 2020, Free Radical Biology and Medicine.

[34]  B. Pitard,et al.  Potential of regulatory T-cell-based therapies in the management of severe COVID-19 , 2020, European Respiratory Journal.

[35]  S. Perlman,et al.  Prostaglandin D2 signaling in dendritic cells is critical for the development of EAE , 2020, Journal of Autoimmunity.

[36]  A. Sette,et al.  Phenotype and kinetics of SARS-CoV-2-specific T cells in COVID-19 patients with acute respiratory distress syndrome , 2020, Science Immunology.

[37]  R. Preissner,et al.  IL-13 is a driver of COVID-19 severity , 2020, medRxiv.

[38]  Lisa E. Gralinski,et al.  SARS-CoV-2 Reverse Genetics Reveals a Variable Infection Gradient in the Respiratory Tract , 2020, Cell.

[39]  Dean Billheimer,et al.  Type 2 inflammation modulates ACE2 and TMPRSS2 in airway epithelial cells , 2020, Journal of Allergy and Clinical Immunology.

[40]  Wu Zhong,et al.  Remdesivir and chloroquine effectively inhibit the recently emerged novel coronavirus (2019-nCoV) in vitro , 2020, Cell Research.

[41]  P. McCray,et al.  Airway surface liquid has innate antiviral activity that is reduced in cystic fibrosis. , 2020, American journal of respiratory cell and molecular biology.

[42]  L. Touqui,et al.  Airway surface liquid acidification initiates host defense abnormalities in Cystic Fibrosis , 2019, Scientific Reports.

[43]  J. Zabner,et al.  HSP90 inhibitor geldanamycin reverts IL-13– and IL-17–induced airway goblet cell metaplasia , 2019, The Journal of clinical investigation.

[44]  Runan Yao,et al.  iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data , 2018, BMC Bioinformatics.

[45]  D. Meyerholz,et al.  Glycogen depletion can increase the specificity of mucin detection in airway tissues , 2018, BMC Research Notes.

[46]  Amanda P. Beck,et al.  Principles and approaches for reproducible scoring of tissue stains in research , 2018, Laboratory Investigation.

[47]  W. Schrödl,et al.  Comparative analysis of humoral immune responses and pathologies of BALB/c and C57BL/6 wildtype mice experimentally infected with a highly virulent Rodentibacter pneumotropicus (Pasteurella pneumotropica) strain , 2018, BMC Microbiology.

[48]  Richard A. Muscat,et al.  Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding , 2018, Science.

[49]  C. Brightling,et al.  Fevipiprant in the treatment of asthma , 2018, Expert opinion on investigational drugs.

[50]  H. Afif,et al.  Exacerbation of Aging‐Associated and Instability‐Induced Murine Osteoarthritis With Deletion of D Prostanoid Receptor 1, a Prostaglandin D2 Receptor , 2017, Arthritis & rheumatology.

[51]  Lior Pachter,et al.  Near-optimal probabilistic RNA-seq quantification , 2016, Nature Biotechnology.

[52]  M. Robinson,et al.  Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences , 2015, F1000Research.

[53]  M. Gelb,et al.  Critical role of phospholipase A2 group IID in age-related susceptibility to severe acute respiratory syndrome–CoV infection , 2015, The Journal of experimental medicine.

[54]  J. Fahy Type 2 inflammation in asthma — present in most, absent in many , 2014, Nature Reviews Immunology.

[55]  W. Huber,et al.  Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.

[56]  D. Bates,et al.  Fitting Linear Mixed-Effects Models Using lme4 , 2014, 1406.5823.

[57]  Andreas Krämer,et al.  Causal analysis approaches in Ingenuity Pathway Analysis , 2013, Bioinform..

[58]  R. Dingledine,et al.  Prostaglandin receptor EP2 in the crosshairs of anti-inflammation, anti-cancer, and neuroprotection. , 2013, Trends in pharmacological sciences.

[59]  R. Clark,et al.  TH2 Cytokines from Malignant Cells Suppress TH1 Responses and Enforce a Global TH2 Bias in Leukemic Cutaneous T-cell Lymphoma , 2013, Clinical Cancer Research.

[60]  R. Villenave,et al.  Cytopathogenesis of Sendai Virus in Well-Differentiated Primary Pediatric Bronchial Epithelial Cells , 2010, Journal of Virology.

[61]  T. Lawrence The nuclear factor NF-kappaB pathway in inflammation. , 2009, Cold Spring Harbor perspectives in biology.

[62]  J. Curran,et al.  De novo generation of a non-segmented negative strand RNA virus with a bicistronic gene. , 2009, Virus research.

[63]  J. Boyce Mast cells and eicosanoid mediators: a system of reciprocal paracrine and autocrine regulation , 2007, Immunological reviews.

[64]  D. Garvey,et al.  Eicosanoids in inflammation: biosynthesis, pharmacology, and therapeutic frontiers. , 2007, Current topics in medicinal chemistry.

[65]  David K. Meyerholz,et al.  Lethal Infection of K18-hACE2 Mice Infected with Severe Acute Respiratory Syndrome Coronavirus , 2006, Journal of Virology.

[66]  B. Koller,et al.  Receptors for prostaglandin E(2) that regulate cellular immune responses in the mouse. , 2001, The Journal of clinical investigation.

[67]  Kristi Kincaid,et al.  M-1/M-2 Macrophages and the Th1/Th2 Paradigm1 , 2000, The Journal of Immunology.

[68]  T. Mosmann,et al.  IL-10 inhibits cytokine production by activated macrophages. , 1991, Journal of immunology.

[69]  T. Mosmann,et al.  IL-10 acts on the antigen-presenting cell to inhibit cytokine production by Th1 cells. , 1991, Journal of immunology.

[70]  W. Lim,et al.  Dexamethasone in Hospitalized Patients with Covid-19 , 2021 .

[71]  J. Mesirov,et al.  The Molecular Signatures Database (MSigDB) hallmark gene set collection. , 2015, Cell systems.

[72]  M. Welsh,et al.  An in vitro model of differentiated human airway epithelia. Methods for establishing primary cultures. , 2002, Methods in molecular biology.

[73]  P. Morel,et al.  Crossregulation between Th1 and Th2 cells. , 1998, Critical reviews in immunology.

[74]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .