NssR, a member of the Crp‐Fnr superfamily from Campylobacter jejuni, regulates a nitrosative stress‐responsive regulon that includes both a single‐domain and a truncated haemoglobin

Consistent with its role as a nitric oxide (NO)‐detoxifying globin in Campylobacter jejuni, Cgb (Campylobacter globin) expression is strongly and specifically induced following exposure to nitrosative stress, suggesting a previously unrecognized capacity for NO‐related stress sensing in this food‐borne pathogen. In this study, Fur and PerR have been eliminated as major regulators of cgb, and NssR (Cj0466), a member of the Crp‐Fnr superfamily, has been identified as the major positive regulatory factor that controls nitrosative stress‐responsive expression of this gene. Accordingly, disruption of nssR resulted in the abolition of inducible cgb expression, which was restored by a complementing chromosomal insertion of the wild‐type gene with its indigenous promoter at a second location. The NssR‐deficient mutant was more sensitive to NO‐related stress than a cgb mutant and this phenotype most likely arises from the failure of these cells to induce other NO‐responsive components in addition to Cgb. Indeed, analysis of global gene expression, by microarray and confirmatory real‐time polymerase chain reaction (PCR) in the wild type and nssR mutant, not only confirmed the dependence of inducible cgb expression on NssR, but also revealed for the first time a novel NssR‐dependent nitrosative stress‐responsive regulon. This regulon of at least four genes includes Cj0465c, a truncated globin. Consistent with NssR being a Crp‐Fnr superfamily member, an Fnr‐like binding sequence (TTAAC‐N4‐GTTAA) was found upstream of each gene at locations −40.5 to −42.5 relative to the centre of the binding sites and the transcription start point. Site‐directed mutagenesis confirmed that this cis‐acting motif mediates the nitrosative stress‐inducible expression of cgb.

[1]  Raphael Nudelman,et al.  OxyR A Molecular Code for Redox-Related Signaling , 2002, Cell.

[2]  Martino Bolognesi,et al.  Truncated Hemoglobins: A New Family of Hemoglobins Widely Distributed in Bacteria, Unicellular Eukaryotes, and Plants* 210 , 2002, The Journal of Biological Chemistry.

[3]  B. Barrell,et al.  The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences , 2000, Nature.

[4]  R. Read,et al.  Flavohemoglobin Hmp Protects Salmonella enterica Serovar Typhimurium from Nitric Oxide-Related Killing by Human Macrophages , 2002, Infection and Immunity.

[5]  J. Ketley,et al.  Iron-Responsive Gene Regulation in a Campylobacter jejuni fur Mutant , 1998, Journal of bacteriology.

[6]  Elizabeth M. Boon,et al.  Ligand specificity of H-NOX domains: from sGC to bacterial NO sensors. , 2005, Journal of inorganic biochemistry.

[7]  Michiko M. Nakano,et al.  Response of Bacillus subtilis to Nitric Oxide and the Nitrosating Agent Sodium Nitroprusside , 2004, Journal of bacteriology.

[8]  C. Cooper,et al.  Nitric oxide synthases: structure, function and inhibition. , 2001, The Biochemical journal.

[9]  H. Aiba,et al.  Evidence for two functional gal promoters in intact Escherichia coli cells. , 1981, The Journal of biological chemistry.

[10]  H. Fischer Genetic regulation of nitrogen fixation in rhizobia. , 1994, Microbiological reviews.

[11]  N. Minton,et al.  Femtomolar Sensitivity of a NO Sensor from Clostridium botulinum , 2004, Science.

[12]  V. Deretic,et al.  Microarray Analysis and Functional Characterization of the Nitrosative Stress Response in Nonmucoid and Mucoid Pseudomonas aeruginosa , 2004, Journal of bacteriology.

[13]  Heidi J Sofia,et al.  Phylogeny of the bacterial superfamily of Crp-Fnr transcription regulators: exploiting the metabolic spectrum by controlling alternative gene programs. , 2003, FEMS microbiology reviews.

[14]  P. Kaiser,et al.  Campylobacter jejuni-Induced Cytokine Responses in Avian Cells , 2005, Infection and Immunity.

[15]  C. Constantinidou,et al.  An Iron-Regulated Alkyl Hydroperoxide Reductase (AhpC) Confers Aerotolerance and Oxidative Stress Resistance to the Microaerophilic Pathogen Campylobacter jejuni , 1999, Journal of bacteriology.

[16]  B. Wittenberg,et al.  Truncated hemoglobin HbN protects Mycobacterium bovis from nitric oxide , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[17]  R. Poole,et al.  Nitric oxide and nitrosative stress tolerance in bacteria. , 2005, Biochemical Society transactions.

[18]  D. Touati,et al.  Direct inhibition by nitric oxide of the transcriptional ferric uptake regulation protein via nitrosylation of the iron , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[19]  C. C. Smith,et al.  Nitric oxide synthesis in patients with infective gastroenteritis , 1999, Gut.

[20]  Guanghui Wu,et al.  Microbial globins. , 2003, Advances in microbial physiology.

[21]  M. Wösten,et al.  Identification of Campylobacter jejuniPromoter Sequences , 1998, Journal of bacteriology.

[22]  J. Weinberg,et al.  Human Mononuclear Phagocyte Nitric Oxide Production and Inducible Nitric Oxide Synthase Expression , 2002 .

[23]  H. Westerhoff,et al.  Nitric Oxide Is a Signal for NNR-Mediated Transcription Activation in Paracoccus denitrificans , 1999, Journal of bacteriology.

[24]  R. Poole,et al.  Role of an Inducible Single-Domain Hemoglobin in Mediating Resistance to Nitric Oxide and Nitrosative Stress in Campylobacter jejuni and Campylobacter coli , 2004, Journal of bacteriology.

[25]  J. Shapleigh,et al.  Analysis of the role of the nnrR gene product in the response of Rhodobacter sphaeroides 2.4.1 to exogenous nitric oxide , 1997, Journal of bacteriology.

[26]  G. Butland,et al.  Nitric oxide in bacteria: synthesis and consumption. , 1999, Biochimica et biophysica acta.

[27]  M. N. Hughes,et al.  New functions for the ancient globin family: bacterial responses to nitric oxide and nitrosative stress , 2000, Molecular microbiology.

[28]  P. R. Gardner,et al.  Nitric Oxide Sensitivity of the Aconitases* , 1997, The Journal of Biological Chemistry.

[29]  B. Demple,et al.  Direct nitric oxide signal transduction via nitrosylation of iron-sulfur centers in the SoxR transcription activator. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[30]  J. Ketley,et al.  Campylobacter jejuni Contains Two Fur Homologs: Characterization of Iron-Responsive Regulation of Peroxide Stress Defense Genes by the PerR Repressor , 1999, Journal of bacteriology.

[31]  G. Storz,et al.  Prominent roles of the NorR and Fur regulators in the Escherichia coli transcriptional response to reactive nitrogen species. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[32]  Jung Mogg Kim,et al.  Enteroinvasive bacteria directly activate expression of iNOS and NO production in human colon epithelial cells. , 1998, American journal of physiology. Gastrointestinal and liver physiology.

[33]  B. Wren,et al.  A PCR-based strategy for the rapid construction of defined bacterial deletion mutants. , 1994, BioTechniques.

[34]  P. R. Gardner,et al.  Regulation of the Nitric Oxide Reduction Operon (norRVW) inEscherichia coli: ROLE OF NorR AND ς54IN THE NITRIC OXIDE STRESS RESPONSE , 2003 .

[35]  Jeffrey Green,et al.  Functional versatility in the CRP-FNR superfamily of transcription factors: FNR and FLP. , 2001, Advances in microbial physiology.

[36]  D. Holden,et al.  Macrophage Nitric Oxide Synthase Associates with Cortical Actin but Is Not Recruited to Phagosomes , 2001, Infection and Immunity.

[37]  Simon F. Park,et al.  Quorum sensing in Campylobacter jejuni: detection of a luxS encoded signalling molecule. , 2002, Microbiology.

[38]  J. Shapleigh,et al.  Cloning and characterization of nnrR, whose product is required for the expression of proteins involved in nitric oxide metabolism in Rhodobacter sphaeroides 2.4.3 , 1996, Journal of bacteriology.

[39]  E. Werner,et al.  Metabolic Fate of Peroxynitrite in Aqueous Solution , 1997, The Journal of Biological Chemistry.

[40]  M. Hutchings,et al.  The nitric oxide regulated nor promoter of Paracoccus denitrificans. , 2000, Microbiology.

[41]  A. Norrby-Teglund,et al.  Rectal Nitric Oxide Gas and Stool Cytokine Levels during the Course of Infectious Gastroenteritis , 2004, Clinical Diagnostic Laboratory Immunology.

[42]  M Bolognesi,et al.  A novel two‐over‐two α‐helical sandwich fold is characteristic of the truncated hemoglobin family , 2000, The EMBO journal.

[43]  T. Wassenaar,et al.  Genetic manipulation of Campylobacter: evaluation of natural transformation and electro-transformation. , 1993, Gene.

[44]  Anders Krogh,et al.  RpoD promoters in Campylobacter jejuni exhibit a strong periodic signal instead of a -35 box. , 2003, Journal of molecular biology.

[45]  Robert V. Tauxe,et al.  Epidemiology of Campylobacter jejuni infections in the United States and other industrialized nations , 2000 .

[46]  P. R. Gardner,et al.  Nitric oxide scavenging and detoxification by the Mycobacterium tuberculosis haemoglobin, HbN in Escherichia coli , 2002, Molecular microbiology.

[47]  B. Pearson,et al.  Campylobacter jejuni gene expression in response to iron limitation and the role of Fur. , 2005, Microbiology.

[48]  Guanghui Wu,et al.  NO sensing by FNR: regulation of the Escherichia coli NO‐detoxifying flavohaemoglobin, Hmp , 2002, The EMBO journal.

[49]  N. Ioannidis,et al.  Flavohemoglobin Hmp Affords Inducible Protection for Escherichia coli Respiration, Catalyzed by Cytochromesbo′ or bd, from Nitric Oxide* , 2000, The Journal of Biological Chemistry.

[50]  Transcriptional analysis of the nirS gene, encoding cytochrome cd1 nitrite reductase, of Paracoccus pantotrophus LMD 92.63. , 2000, Microbiology.

[51]  C. Szabó,et al.  Bacterial induction of inducible nitric oxide synthase in cultured human intestinal epithelial cells. , 1998, Gastroenterology.

[52]  D. Touati,et al.  Lethal oxidative damage and mutagenesis are generated by iron in delta fur mutants of Escherichia coli: protective role of superoxide dismutase , 1995, Journal of bacteriology.

[53]  H. Westerhoff,et al.  Nitrite and nitric oxide reduction in Paracoccus denitrificans is under the control of NNR, a regulatory protein that belongs to the FNR family of transcriptional activators , 1995, FEBS letters.

[54]  J. B. Vicente,et al.  New Genes Implicated in the Protection of Anaerobically Grown Escherichia coli against Nitric Oxide* , 2005, Journal of Biological Chemistry.

[55]  J. Shapleigh,et al.  Requirement of Nitric Oxide for Induction of Genes Whose Products Are Involved in Nitric Oxide Metabolism in Rhodobacter sphaeroides 2.4.3* , 1996, The Journal of Biological Chemistry.

[56]  Simon F. Park,et al.  Generation of a Superoxide Dismutase (SOD)-Deficient Mutant of Campylobacter coli: Evidence for the Significance of SOD in Campylobacter Survival and Colonization , 1999, Applied and Environmental Microbiology.

[57]  D. Maskell,et al.  Adaptation of Campylobacter jejuni NCTC11168 to High-Level Colonization of the Avian Gastrointestinal Tract , 2004, Infection and Immunity.

[58]  J. Helmann,et al.  Bacillus subtilis contains multiple Fur homologues: identification of the iron uptake (Fur) and peroxide regulon (PerR) repressors , 1998, Molecular microbiology.

[59]  S. Busby,et al.  Identification and analysis of 'extended -10' promoters in Escherichia coli. , 2003, Nucleic acids research.

[60]  T. Toner,et al.  Rapid method for the characterization of 3' and 5' UTRs of influenza viruses. , 2003, Journal of virological methods.

[61]  M. Hutchings,et al.  The NorR Protein of Escherichia coli Activates Expression of the Flavorubredoxin Gene norV in Response to Reactive Nitrogen Species , 2002, Journal of bacteriology.

[62]  I Rovira,et al.  Nitric oxide , 2021, Reactions Weekly.

[63]  Thomas D. Schmittgen,et al.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.

[64]  C. Cooper,et al.  Nitric oxide synthases: structure, function and inhibition , 2001 .

[65]  J Stevens,et al.  ABI PRISM 7700 Sequence Detection Systemを用いたInvaderアッセイによるSNP解析 , 2000 .

[66]  R. Pictet,et al.  Visualization of the interaction of a regulatory protein with RNA in vivo. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[67]  D. Goldberg,et al.  Regulation of the Salmonella typhimurium flavohemoglobin gene. A new pathway for bacterial gene expression in response to nitric oxide. , 1998, The Journal of biological chemistry.

[68]  S. Ichiyama,et al.  Mechanism of nitric oxide-dependent killing of Mycobacterium bovis BCG in human alveolar macrophages , 1997, Infection and immunity.

[69]  Steven T Pullan,et al.  Transcriptional Responses of Escherichia coli to S-Nitrosoglutathione under Defined Chemostat Conditions Reveal Major Changes in Methionine Biosynthesis* , 2005, Journal of Biological Chemistry.

[70]  S. Cole,et al.  Molecular genetic analysis of FNR‐dependent promoters , 1989, Molecular microbiology.

[71]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .

[72]  Jeffrey Green,et al.  The FNR Modulon and FNR-Regulated Gene Expression , 1996 .

[73]  M. Wösten,et al.  The FlgS/FlgR Two-component Signal Transduction System Regulates the fla Regulon in Campylobacter jejuni* , 2004, Journal of Biological Chemistry.