Interactions of Viral Proteins from Pathogenic and Low or Non-Pathogenic Orthohantaviruses with Human Type I Interferon Signaling

Rodent-borne orthohantaviruses are asymptomatic in their natural reservoir, but they can cause severe diseases in humans. Although an exacerbated immune response relates to hantaviral pathologies, orthohantaviruses have to antagonize the antiviral interferon (IFN) response to successfully propagate in infected cells. We studied interactions of structural and nonstructural (NSs) proteins of pathogenic Puumala (PUUV), low-pathogenic Tula (TULV), and non-pathogenic Prospect Hill (PHV) viruses, with human type I and III IFN (IFN-I and IFN-III) pathways. The NSs proteins of all three viruses inhibited the RIG-I-activated IFNβ promoter, while only the glycoprotein precursor (GPC) of PUUV, or its cleavage product Gn/Gc, and the nucleocapsid (N) of TULV inhibited it. Moreover, the GPC of both PUUV and TULV antagonized the promoter of IFN-stimulated responsive elements (ISRE). Different viral proteins could thus contribute to inhibition of IFNβ response in a viral context. While PUUV and TULV strains replicated similarly, whether expressing entire or truncated NSs proteins, only PUUV encoding a wild type NSs protein led to late IFN expression and activation of IFN-stimulated genes (ISG). This, together with the identification of particular domains of NSs proteins and different biological processes that are associated with cellular proteins in complex with NSs proteins, suggested that the activation of IFN-I is probably not the only antiviral pathway to be counteracted by orthohantaviruses and that NSs proteins could have multiple inhibitory functions.

[1]  C. La Rosa,et al.  Amyloidogenic Intrinsically Disordered Proteins: New Insights into Their Self-Assembly and Their Interaction with Membranes , 2020, Life.

[2]  Dusan Kunec,et al.  Isolation and characterization of new Puumala orthohantavirus strains from Germany , 2020, Virus Genes.

[3]  N. Tischler,et al.  The Andes Orthohantavirus NSs Protein Antagonizes the Type I Interferon Response by Inhibiting MAVS Signaling , 2020, Journal of Virology.

[4]  I. Martins,et al.  Intrinsically disordered protein domains in flavivirus infection. , 2020, Archives of biochemistry and biophysics.

[5]  Soon Gang Choi,et al.  Maximizing binary interactome mapping with a minimal number of assays , 2019, Nature Communications.

[6]  Damian Szklarczyk,et al.  STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets , 2018, Nucleic Acids Res..

[7]  Zheng Xing,et al.  Suppression of the IFN-α and -β Induction through Sequestering IRF7 into Viral Inclusion Bodies by Nonstructural Protein NSs in Severe Fever with Thrombocytopenia Syndrome Bunyavirus Infection , 2018, The Journal of Immunology.

[8]  J. Moffat,et al.  Protocadherin-1 is essential for cell entry by New World hantaviruses , 2018, Nature.

[9]  F. Strle,et al.  Delayed Interferon Type 1-Induced Antiviral State Is a Potential Factor for Hemorrhagic Fever With Renal Syndrome Severity , 2018, The Journal of infectious diseases.

[10]  Zheng Xing,et al.  Critical Role of HAX-1 in Promoting Avian Influenza Virus Replication in Lung Epithelial Cells , 2018, Mediators of inflammation.

[11]  Zhìhóng Hú,et al.  Heartland virus NSs protein disrupts host defenses by blocking the TBK1 kinase–IRF3 transcription factor interaction and signaling required for interferon induction , 2017, The Journal of Biological Chemistry.

[12]  M. Diamond,et al.  Negative regulators of the RIG‐I‐like receptor signaling pathway , 2017, European journal of immunology.

[13]  M. Palmarini,et al.  Nonstructural Protein NSs of Schmallenberg Virus Is Targeted to the Nucleolus and Induces Nucleolar Disorganization , 2016, Journal of Virology.

[14]  N. Tordo,et al.  What Do We Know about How Hantaviruses Interact with Their Different Hosts? , 2016, Viruses.

[15]  F. Weber,et al.  Phleboviruses and the Type I Interferon Response , 2016, Viruses.

[16]  Kit-San Yuen,et al.  Suppression of type I and type III IFN signalling by NSs protein of severe fever with thrombocytopenia syndrome virus through inhibition of STAT1 phosphorylation and activation. , 2015, The Journal of general virology.

[17]  G. Wilkie,et al.  Transcriptome analysis reveals the host response to Schmallenberg virus in bovine cells and antagonistic effects of the NSs protein , 2015, BMC Genomics.

[18]  M. Suthar,et al.  Mechanisms of innate immune evasion in re-emerging RNA viruses , 2015, Current Opinion in Virology.

[19]  Steven L Salzberg,et al.  HISAT: a fast spliced aligner with low memory requirements , 2015, Nature Methods.

[20]  W. Cao,et al.  Disruption of Type I Interferon Signaling by the Nonstructural Protein of Severe Fever with Thrombocytopenia Syndrome Virus via the Hijacking of STAT2 and STAT1 into Inclusion Bodies , 2015, Journal of Virology.

[21]  Zekun Wang,et al.  Andes Virus Nucleocapsid Protein Interrupts Protein Kinase R Dimerization To Counteract Host Interference in Viral Protein Synthesis , 2014, Journal of Virology.

[22]  E. Mackow,et al.  Hantavirus interferon regulation and virulence determinants. , 2014, Virus research.

[23]  T. Sironen,et al.  Evolution of hantaviruses: co-speciation with reservoir hosts for more than 100 MYR. , 2014, Virus research.

[24]  Zheng Xing,et al.  Roles of viroplasm‐like structures formed by nonstructural protein NSs in infection with severe fever with thrombocytopenia syndrome virus , 2014, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[25]  Boquan Jin,et al.  Hantaan Virus Infection Induces CXCL10 Expression through TLR3, RIG-I, and MDA-5 Pathways Correlated with the Disease Severity , 2014, Mediators of inflammation.

[26]  E. Mackow,et al.  An Innate Immunity-Regulating Virulence Determinant Is Uniquely Encoded within the Andes Virus Nucleocapsid Protein , 2014, mBio.

[27]  A. García-Sastre,et al.  Hijacking of RIG-I Signaling Proteins into Virus-Induced Cytoplasmic Structures Correlates with the Inhibition of Type I Interferon Responses , 2014, Journal of Virology.

[28]  E. Mackow,et al.  Hantavirus GnT Elements Mediate TRAF3 Binding and Inhibit RIG-I/TBK1-Directed Beta Interferon Transcription by Blocking IRF3 Phosphorylation , 2014, Journal of Virology.

[29]  Wei Shi,et al.  featureCounts: an efficient general purpose program for assigning sequence reads to genomic features , 2013, Bioinform..

[30]  P. Vidalain,et al.  NS3 of Bluetongue Virus Interferes with the Induction of Type I Interferon , 2013, Journal of Virology.

[31]  M. Mir,et al.  How hantaviruses modulate cellular pathways for efficient replication? , 2013, Frontiers in bioscience.

[32]  Y. Li,et al.  Hantaan virus triggers TLR4-dependent innate immune responses. , 2012, Viral immunology.

[33]  E. Mackow,et al.  Hantavirus Regulation of Type I Interferon Responses , 2012, Advances in virology.

[34]  Guangchuang Yu,et al.  clusterProfiler: an R package for comparing biological themes among gene clusters. , 2012, Omics : a journal of integrative biology.

[35]  S. Cherry,et al.  AMP-Activated Kinase Restricts Rift Valley Fever Virus Infection by Inhibiting Fatty Acid Synthesis , 2012, PLoS pathogens.

[36]  J. Darlix,et al.  The Andes Hantavirus NSs Protein Is Expressed from the Viral Small mRNA by a Leaky Scanning Mechanism , 2011, Journal of Virology.

[37]  P. Vidalain,et al.  Benchmarking a luciferase complementation assay for detecting protein complexes , 2011, Nature Methods.

[38]  Man-Seong Park,et al.  Comparison of innate immune responses to pathogenic and putative non-pathogenic hantaviruses in vitro. , 2011, Virus research.

[39]  T. Giese,et al.  RNA helicase retinoic acid-inducible gene I as a sensor of Hantaan virus replication. , 2011, The Journal of general virology.

[40]  E. Mackow,et al.  The C-Terminal 42 Residues of the Tula Virus Gn Protein Regulate Interferon Induction , 2011, Journal of Virology.

[41]  J. Klingström,et al.  Hantavirus protein interactions regulate cellular functions and signaling responses , 2011, Expert review of anti-infective therapy.

[42]  H. Ebihara,et al.  Antagonism of Type I Interferon Responses by New World Hantaviruses , 2010, Journal of Virology.

[43]  A. Vaheri,et al.  Interaction between hantaviral nucleocapsid protein and the cytoplasmic tail of surface glycoprotein Gn. , 2010, Virus research.

[44]  Michelle S. Scott,et al.  Characterization and prediction of protein nucleolar localization sequences , 2010, Nucleic acids research.

[45]  H. Ebihara,et al.  New World Hantaviruses Activate IFNλ Production in Type I IFN-Deficient Vero E6 Cells , 2010, PloS one.

[46]  Mark D. Robinson,et al.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..

[47]  A. Rang Modulation of innate immune responses by hantaviruses. , 2010, Critical reviews in immunology.

[48]  A. Vaheri,et al.  Degradation and aggresome formation of the Gn tail of the apathogenic Tula hantavirus. , 2009, The Journal of general virology.

[49]  T. Hobman,et al.  The Rubella Virus Capsid Protein Inhibits Mitochondrial Import , 2009, Journal of Virology.

[50]  Shannon L. Taylor,et al.  Hantaan Virus Nucleocapsid Protein Binds to Importin α Proteins and Inhibits Tumor Necrosis Factor Alpha-Induced Activation of Nuclear Factor Kappa B , 2008, Journal of Virology.

[51]  E. Mackow,et al.  The NY-1 Hantavirus Gn Cytoplasmic Tail Coprecipitates TRAF3 and Inhibits Cellular Interferon Responses by Disrupting TBK1-TRAF3 Complex Formation , 2008, Journal of Virology.

[52]  F. Weber,et al.  Tula and Puumala hantavirus NSs ORFs are functional and the products inhibit activation of the interferon-beta promoter. , 2008, Journal of medical virology.

[53]  A. Vaheri,et al.  Tula hantavirus isolate with the full-length ORF for nonstructural protein NSs survives for more consequent passages in interferon-competent cells than the isolate having truncated NSs ORF , 2008, Virology Journal.

[54]  E. Mackow,et al.  Degrons at the C Terminus of the Pathogenic but Not the Nonpathogenic Hantavirus G1 Tail Direct Proteasomal Degradation , 2007, Journal of Virology.

[55]  T. Ksiazek,et al.  Andes and Prospect Hill Hantaviruses Differ in Early Induction of Interferon although Both Can Downregulate Interferon Signaling , 2007, Journal of Virology.

[56]  D. Krüger,et al.  A novel method for cloning of non-cytolytic viruses. , 2006, Journal of virological methods.

[57]  T. Giese,et al.  Differential Antiviral Response of Endothelial Cells after Infection with Pathogenic and Nonpathogenic Hantaviruses , 2004, Journal of Virology.

[58]  S. S. St. Jeor,et al.  Hantavirus immunology. , 2002, Viral immunology.

[59]  A. Plyusnin,et al.  Virus evolution and genetic diversity of hantaviruses and their rodent hosts. , 2001, Current topics in microbiology and immunology.

[60]  J. Hiscott,et al.  Virus-Dependent Phosphorylation of the IRF-3 Transcription Factor Regulates Nuclear Translocation, Transactivation Potential, and Proteasome-Mediated Degradation , 1998, Molecular and Cellular Biology.

[61]  C. Hart Hantavirus infections. , 1997, Journal of medical microbiology.

[62]  A. Vaheri,et al.  Effect of interferon-alpha and cell differentiation on Puumala virus infection in human monocyte/macrophages. , 1995, Virology.

[63]  A. Sanchez,et al.  Genome structure and variability of a virus causing hantavirus pulmonary syndrome. , 1994, Virology.