Evaluation of automated airway morphological quantification for assessing fibrosing lung disease

Abnormal airway dilatation, termed traction bronchiectasis, is a typical feature of idiopathic pulmonary fibrosis (IPF). Volumetric computed tomography (CT) imaging captures the loss of normal airway tapering in IPF. We postulated that automated quantification of airway abnormalities could provide estimates of IPF disease extent and severity. We propose AirQuant, an automated computational pipeline that systematically parcellates the airway tree into its lobes and generational branches from a deep learning based airway segmentation, deriving airway structural measures from chest CT. Importantly, AirQuant prevents the occurrence of spurious airway branches by thick wave propagation and removes loops in the airway-tree by graph search, overcoming limitations of existing airway skeletonisation algorithms. Tapering between airway segments (intertapering) and airway tortuosity computed by AirQuant were compared between 14 healthy participants and 14 IPF patients. Airway intertapering was significantly reduced in IPF patients, and airway tortuosity was significantly increased when compared to healthy controls. Differences were most marked in the lower lobes, conforming to the typical distribution of IPF-related damage. AirQuant is an open-source pipeline that avoids limitations of existing airway quantification algorithms and has clinical interpretability. Automated airway measurements may have potential as novel imaging biomarkers of IPF severity and disease extent. ∗Corresponding author: email: a.pakzad@cs.ucl.ac.uk ar X iv :2 11 1. 10 44 3v 1 [ ph ys ic s. m ed -p h] 1 9 N ov 2 02 1

[1]  Joseph Jacob,et al.  Automated Quantitative Computed Tomography Versus Visual Computed Tomography Scoring in Idiopathic Pulmonary Fibrosis: Validation Against Pulmonary Function , 2016, Journal of thoracic imaging.

[2]  Leon M. Aksman,et al.  Serial CT analysis in idiopathic pulmonary fibrosis: comparison of visual features that determine patient outcome , 2020, Thorax.

[3]  Milan Sonka,et al.  Quantitative analysis of pulmonary airway tree structures , 2006, Comput. Biol. Medicine.

[4]  Jimmy Ba,et al.  Adam: A Method for Stochastic Optimization , 2014, ICLR.

[5]  Hideki Shima,et al.  Bronchoarterial ratio and bronchial wall thickness on high-resolution CT in asymptomatic subjects: correlation with age and smoking. , 2003, AJR. American journal of roentgenology.

[6]  Andrew W. Fitzgibbon,et al.  Direct least squares fitting of ellipses , 1996, Proceedings of 13th International Conference on Pattern Recognition.

[7]  Philip Kollmannsberger,et al.  The small world of osteocytes: connectomics of the lacuno-canalicular network in bone , 2017, 1702.04117.

[8]  Frank Hutter,et al.  Decoupled Weight Decay Regularization , 2017, ICLR.

[9]  Andrew Zisserman,et al.  Very Deep Convolutional Networks for Large-Scale Image Recognition , 2014, ICLR.

[10]  Zhimin Wang,et al.  Automated Lobe-Based Airway Labeling , 2012, Int. J. Biomed. Imaging.

[11]  Marleen de Bruijne,et al.  Airway tapering: an objective image biomarker for bronchiectasis , 2020, European Radiology.

[12]  Vicente Grau,et al.  A combined image-modelling approach assessing the impact of hyperinflation due to emphysema on regional ventilation-perfusion matching , 2017, Comput. methods Biomech. Biomed. Eng. Imaging Vis..

[13]  Geoffrey McLennan,et al.  Virtual bronchoscopy for quantitative airway analysis , 2005, SPIE Medical Imaging.

[14]  Eric A. Hoffman,et al.  Extraction of Airways From CT (EXACT'09) , 2012, IEEE Transactions on Medical Imaging.

[15]  Hans-Ulrich Kauczor,et al.  About Objective 3-D Analysis of Airway Geometry in Computerized Tomography , 2008, IEEE Transactions on Medical Imaging.

[16]  H. Collard,et al.  Models of disease behavior in idiopathic pulmonary fibrosis , 2015, BMC Medicine.

[17]  Takeshi Johkoh,et al.  Diagnosis of Idiopathic Pulmonary Fibrosis. An Official ATS/ERS/JRS/ALAT Clinical Practice Guideline , 2018, American journal of respiratory and critical care medicine.

[18]  Geoffrey E. Hinton,et al.  ImageNet classification with deep convolutional neural networks , 2012, Commun. ACM.

[19]  A. Nicholson,et al.  Fibrotic idiopathic interstitial pneumonias: HRCT findings that predict mortality , 2011, European Radiology.

[20]  E. A. Sykes,et al.  Hypoxic Pulmonary Vasoconstriction: From Molecular Mechanisms to Medicine , 2017, Chest.

[21]  R. Hubbard,et al.  Global incidence and mortality of idiopathic pulmonary fibrosis: a systematic review , 2015, European Respiratory Journal.

[22]  T. Nicolai,et al.  The Prevalence of Tracheal Bronchus in Pediatric Patients Undergoing Rigid Bronchoscopy , 2014, Journal of bronchology & interventional pulmonology.

[23]  Georg Langs,et al.  Automatic lung segmentation in routine imaging is primarily a data diversity problem, not a methodology problem , 2020, European Radiology Experimental.

[24]  L. R. Dice Measures of the Amount of Ecologic Association Between Species , 1945 .

[25]  J. F. Lerallut,et al.  Automated airway evaluation system for multi-slice computed tomography using airway lumen diameter, airway wall thickness and broncho-arterial ratio , 2006, SPIE Medical Imaging.

[26]  David J. Hawkes,et al.  Tapering analysis of airways with bronchiectasis , 2018, Medical Imaging.

[27]  Natalia Gimelshein,et al.  PyTorch: An Imperative Style, High-Performance Deep Learning Library , 2019, NeurIPS.

[28]  D A Lynch,et al.  Bronchoarterial ratio on thin section CT: comparison between high altitude and sea level. , 1997, Journal of computer assisted tomography.

[29]  Sébastien Ourselin,et al.  TorchIO: A Python library for efficient loading, preprocessing, augmentation and patch-based sampling of medical images in deep learning , 2020, Comput. Methods Programs Biomed..

[30]  Sergey Ioffe,et al.  Batch Normalization: Accelerating Deep Network Training by Reducing Internal Covariate Shift , 2015, ICML.

[31]  D. McCauley,et al.  Cystic fibrosis: scoring system with thin-section CT. , 1991, Radiology.

[32]  G. Koch,et al.  A new era in idiopathic pulmonary fibrosis: considerations for future clinical trials , 2015, European Respiratory Journal.

[33]  Raúl San José Estépar,et al.  Quantitative CT Measures of Bronchiectasis in Smokers , 2017, Chest.

[34]  M. Spiteri,et al.  Idiopathic pulmonary fibrosis in the UK: analysis of the British Thoracic Society electronic registry between 2013 and 2019 , 2021, ERJ Open Research.

[35]  Vladlen Koltun,et al.  Multi-Scale Context Aggregation by Dilated Convolutions , 2015, ICLR.

[36]  N. Müller,et al.  Fleischner Society: glossary of terms for thoracic imaging. , 2008, Radiology.

[37]  Marleen de Bruijne,et al.  Optimal surface segmentation using flow lines to quantify airway abnormalities in chronic obstructive pulmonary disease , 2014, Medical Image Anal..