Genomic characterization of Ambrosia asymptomatic virus 1 and evidence of other Tymovirales members in the Oklahoma tallgrass prairie revealed by sequence analysis

[1]  K. Scheets.  Infectious transcripts of an asymptomatic panicovirus identified from a metagenomic survey. , 2013, Virus research.

[2]  M. Palmer,et al.  Co-divergence and host-switching in the evolution of tobamoviruses. , 2012, The Journal of general virology.

[3]  B. Roe,et al.  Molecular characterization, ecology, and epidemiology of a novel Tymovirus in Asclepias viridis from Oklahoma. , 2012, Phytopathology.

[4]  M. Nei,et al.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. , 2011, Molecular biology and evolution.

[5]  B. Roe,et al.  Detection of members of the Tombusviridae in the Tallgrass Prairie Preserve, Osage County, Oklahoma, USA. , 2011, Virus research.

[6]  Vincent Moulton,et al.  RDP3: a flexible and fast computer program for analyzing recombination , 2010, Bioinform..

[7]  Guoan Shen,et al.  Ecogenomics: using massively parallel pyrosequencing to understand virus ecology , 2010, Molecular ecology.

[8]  B. Roe,et al.  Non-cultivated plants of the Tallgrass Prairie Preserve of northeastern Oklahoma frequently contain virus-like sequences in particulate fractions. , 2009, Virus research.

[9]  B. Roe,et al.  Evidence for novel viruses by analysis of nucleic acids in virus-like particle fractions from Ambrosia psilostachya. , 2008, Journal of virological methods.

[10]  M. Palmer.  The Vascular Flora of the Tallgrass Prairie Preserve, Osage County, Oklahoma , 2007 .

[11]  V. Dolja,et al.  Family Flexiviridae: a case study in virion and genome plasticity. , 2007, Annual review of phytopathology.

[12]  Liza Gross.  Bacterial Fimbriae Designed to Stay with the Flow , 2006, PLoS biology.

[13]  Jonathan D Wren,et al.  Plant Virus Biodiversity and Ecology , 2006, PLoS biology.

[14]  M. Nei,et al.  Prospects for inferring very large phylogenies by using the neighbor-joining method. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[15]  J. Thompson,et al.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.

[16]  N. Saitou,et al.  The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.

[17]  J. Felsenstein.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP , 1985, Evolution; international journal of organic evolution.

[18]  B. Roe,et al.  Detection of members of the Secoviridae in the Tallgrass Prairie Preserve, Osage County, Oklahoma, USA. , 2012, Virus research.

[19]  M. Palmer,et al.  Lessons from the prairie: Research at The Nature Conservancy’s Tallgrass Prairie Preserve , 2009 .

[20]  J. Maniloff,et al.  Virus taxonomy : eighth report of the International Committee on Taxonomy of Viruses , 2005 .

[21]  David H. L. Bishop,et al.  The International Committee on Taxonomy of Viruses , 1995 .