Expression Profile of Sugarcane Transcription Factor Genes Involved in Lignin Biosynthesis

[1]  Shihui Yang,et al.  Lignin plays a negative role in the biochemical process for producing lignocellulosic biofuels. , 2014, Current opinion in biotechnology.

[2]  W. Boerjan,et al.  Lignification in Sugarcane: Biochemical Characterization, Gene Discovery, and Expression Analysis in Two Genotypes Contrasting for Lignin Content1[W] , 2013, Plant Physiology.

[3]  Nobutaka Mitsuda,et al.  Engineering the Oryza sativa cell wall with rice NAC transcription factors regulating secondary wall formation , 2013, Front. Plant Sci..

[4]  Guangmin Xia,et al.  The heterologous expression in Arabidopsis thaliana of sorghum transcription factor SbbHLH1 downregulates lignin synthesis. , 2013, Journal of experimental botany.

[5]  P. Mazzafera,et al.  The proteomes of feedstocks used for the production of second‐generation ethanol: a lacuna in the biofuel era , 2013 .

[6]  John Ralph,et al.  Metabolic engineering of novel lignin in biomass crops. , 2012, The New phytologist.

[7]  Bartel Vanholme,et al.  A Systems Biology View of Responses to Lignin Biosynthesis Perturbations in Arabidopsis[W] , 2012, Plant Cell.

[8]  P. Mazzafera,et al.  Analysis of soluble lignin in sugarcane by ultrahigh performance liquid chromatography-tandem mass spectrometry with a do-it-yourself oligomer database. , 2012, Analytical chemistry.

[9]  S. Hazen,et al.  Transcriptional Regulation of Grass Secondary Cell Wall Biosynthesis: Playing Catch-Up with Arabidopsis thaliana , 2012, Front. Plant Sci..

[10]  C. Douglas,et al.  The Class II KNOX gene KNAT7 negatively regulates secondary wall formation in Arabidopsis and is functionally conserved in Populus. , 2012, The New phytologist.

[11]  E. Grotewold,et al.  Grass phenylpropanoids: regulate before using! , 2012, Plant science : an international journal of experimental plant biology.

[12]  R. Dixon,et al.  On-off switches for secondary cell wall biosynthesis. , 2012, Molecular plant.

[13]  M. Nei,et al.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. , 2011, Molecular biology and evolution.

[14]  P. Holm,et al.  Characterization of barley (Hordeum vulgare L.) NAC transcription factors suggests conserved functions compared to both monocots and dicots , 2011, BMC Research Notes.

[15]  C. Douglas,et al.  OVATE FAMILY PROTEIN4 (OFP4) interaction with KNAT7 regulates secondary cell wall formation in Arabidopsis thaliana. , 2011, The Plant journal : for cell and molecular biology.

[16]  R. Dixon,et al.  Transcriptional networks for lignin biosynthesis: more complex than we thought? , 2011, Trends in plant science.

[17]  Iain S. Donnison,et al.  Identification of genes involved in cell wall biogenesis in grasses by differential gene expression profiling of elongating and non-elongating maize internodes , 2011, Journal of experimental botany.

[18]  B. Usadel,et al.  PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species[W][OA] , 2011, Plant Cell.

[19]  Adriana Cheavegatti-Gianotto,et al.  Sugarcane (Saccharum X officinarum): A Reference Study for the Regulation of Genetically Modified Cultivars in Brazil , 2011, Tropical Plant Biology.

[20]  Arjun Krishnan,et al.  Coordinated Activation of Cellulose and Repression of Lignin Biosynthesis Pathways in Rice1[C][W][OA] , 2010, Plant Physiology.

[21]  Trey Ideker,et al.  Cytoscape 2.8: new features for data integration and network visualization , 2010, Bioinform..

[22]  Marilyn F. Slininger,et al.  Lignin monomer composition affects Arabidopsis cell-wall degradability after liquid hot water pretreatment , 2010, Biotechnology for biofuels.

[23]  E. Grotewold,et al.  ZmMYB31 directly represses maize lignin genes and redirects the phenylpropanoid metabolic flux. , 2010, The Plant journal : for cell and molecular biology.

[24]  R. Dixon,et al.  Syringyl lignin biosynthesis is directly regulated by a secondary cell wall master switch , 2010, Proceedings of the National Academy of Sciences.

[25]  R. Zhong,et al.  The poplar MYB transcription factors, PtrMYB3 and PtrMYB20, are involved in the regulation of secondary wall biosynthesis. , 2010, Plant & cell physiology.

[26]  R. Zhong,et al.  Transcriptional regulation of lignin biosynthesis , 2009, Plant signaling & behavior.

[27]  R. Zhong,et al.  MYB83 is a direct target of SND1 and acts redundantly with MYB46 in the regulation of secondary cell wall biosynthesis in Arabidopsis. , 2009, Plant & cell physiology.

[28]  P. Puigdoménech,et al.  The maize ZmMYB42 represses the phenylpropanoid pathway and affects the cell wall structure, composition and degradability in Arabidopsis thaliana , 2009, Plant Molecular Biology.

[29]  R. Zhong,et al.  MYB58 and MYB63 Are Transcriptional Activators of the Lignin Biosynthetic Pathway during Secondary Cell Wall Formation in Arabidopsis[C][W] , 2009, The Plant Cell Online.

[30]  D. Janies,et al.  GRASSIUS: A Platform for Comparative Regulatory Genomics across the Grasses1[W][OA] , 2008, Plant Physiology.

[31]  Bartek Wilczynski,et al.  BNFinder: exact and efficient method for learning Bayesian networks , 2008, Bioinform..

[32]  Joshua S Yuan,et al.  Plants to power: bioenergy to fuel the future. , 2008, Trends in plant science.

[33]  J. Goldemberg The Brazilian biofuels industry , 2008, Biotechnology for biofuels.

[34]  Ilya Venger,et al.  Gene Expression and Metabolism in Tomato Fruit Surface Tissues1[C][W] , 2008, Plant Physiology.

[35]  H. Kanamori,et al.  Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway , 2008, Proceedings of the National Academy of Sciences.

[36]  R. Zhong,et al.  The MYB46 Transcription Factor Is a Direct Target of SND1 and Regulates Secondary Wall Biosynthesis in Arabidopsis , 2007, The Plant Cell Online.

[37]  Richard A Dixon,et al.  Lignin modification improves fermentable sugar yields for biofuel production , 2007, Nature Biotechnology.

[38]  R. Zhong,et al.  Two NAC domain transcription factors, SND1 and NST1, function redundantly in regulation of secondary wall synthesis in fibers of Arabidopsis , 2007, Planta.

[39]  T. Demura,et al.  SND1, a NAC Domain Transcription Factor, Is a Key Regulator of Secondary Wall Synthesis in Fibers of Arabidopsis[W] , 2006, The Plant Cell Online.

[40]  T. Maes,et al.  Down-regulation of the maize and Arabidopsis thaliana caffeic acid O-methyl-transferase genes by two new maize R2R3-MYB transcription factors , 2006, Plant Molecular Biology.

[41]  Richard A Dixon,et al.  Targeted down-regulation of cytochrome P450 enzymes for forage quality improvement in alfalfa (Medicago sativa L.). , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[42]  K. Shinozaki,et al.  The NAC Transcription Factors NST1 and NST2 of Arabidopsis Regulate Secondary Wall Thickenings and Are Required for Anther Dehiscencew⃞ , 2005, The Plant Cell Online.

[43]  J. Grima-Pettenati,et al.  EgMYB2, a new transcriptional activator from Eucalyptus xylem, regulates secondary cell wall formation and lignin biosynthesis. , 2005, The Plant journal : for cell and molecular biology.

[44]  J. Grabber How Do Lignin Composition, Structure, and Cross‐Linking Affect Degradability? A Review of Cell Wall Model Studies , 2005 .

[45]  A. Aharoni,et al.  The SHINE Clade of AP2 Domain Transcription Factors Activates Wax Biosynthesis, Alters Cuticle Properties, and Confers Drought Tolerance when Overexpressed in Arabidopsis w⃞ , 2004, The Plant Cell Online.

[46]  C. Chapple,et al.  Significant increases in pulping efficiency in C4H-F5H-transformed poplars: improved chemical savings and reduced environmental toxins. , 2003, Journal of agricultural and food chemistry.

[47]  A. Moorman,et al.  Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data , 2003, Neuroscience Letters.

[48]  G. Horgan,et al.  Relative expression software tool (REST©) for group-wise comparison and statistical analysis of relative expression results in real-time PCR , 2002 .

[49]  Thomas D. Schmittgen,et al.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.

[50]  C. Tonelli,et al.  Transcriptional repression by AtMYB4 controls production of UV‐protecting sunscreens in Arabidopsis , 2000, The EMBO journal.

[51]  J. Thompson,et al.  Multiple sequence alignment with Clustal X. , 1998, Trends in biochemical sciences.

[52]  Cathie Martin,et al.  The AmMYB308 and AmMYB330 Transcription Factors from Antirrhinum Regulate Phenylpropanoid and Lignin Biosynthesis in Transgenic Tobacco , 1998, Plant Cell.

[53]  J. Cairney,et al.  A simple and efficient method for isolating RNA from pine trees , 1993, Plant Molecular Biology Reporter.

[54]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[55]  M. Kumar,et al.  MYB103 is required for FERULATE-5-HYDROXYLASE expression and syringyl lignin biosynthesis in Arabidopsis stems. , 2013, The Plant journal : for cell and molecular biology.

[56]  A. Adato,et al.  The tomato SlSHINE3 transcription factor regulates fruit cuticle formation and epidermal patterning. , 2013, The New phytologist.

[57]  C. N. Stewart,et al.  Functional characterization of the switchgrass (Panicum virgatum) R2R3-MYB transcription factor PvMYB4 for improvement of lignocellulosic feedstocks. , 2012, The New phytologist.

[58]  O. Singh,et al.  Sugarcane bagasse and leaves: foreseeable biomass of biofuel and bio‐products , 2012 .