A Critical Quantity for Noise Attenuation in Feedback Systems
暂无分享,去创建一个
Jack Xin | Liming Wang | Qing Nie | J. Xin | Q. Nie | Liming Wang
[1] Nicholas T. Ingolia,et al. Positive-Feedback Loops as a Flexible Biological Module , 2007, Current Biology.
[2] Shiro Usui,et al. Digital Low-Pass Differentiation for Biological Signal Processing , 1982, IEEE Transactions on Biomedical Engineering.
[3] Chi-Ying F. Huang,et al. Ultrasensitivity in the mitogen-activated protein kinase cascade. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[4] H. Weitzner,et al. Perturbation Methods in Applied Mathematics , 1969 .
[5] A. Oudenaarden,et al. Enhancement of cellular memory by reducing stochastic transitions , 2005, Nature.
[6] James E. Ferrell,et al. Feedback regulation of opposing enzymes generates robust, all-or-none bistable responses , 2008, Current Biology.
[7] Richard S Lewis,et al. Calcium signaling mechanisms in T lymphocytes. , 2001, Annual review of immunology.
[8] R. Seydel. Practical bifurcation and stability analysis : from equilibrium to chaos , 1994 .
[9] Eduardo Sontag,et al. Optimal Length and Signal Amplification in Weakly Activated Signal Transduction Cascades , 2003, math/0311357.
[10] D. Drubin,et al. Origins of Cell Polarity , 1996, Cell.
[11] Eduardo Sontag,et al. Untangling the wires: A strategy to trace functional interactions in signaling and gene networks , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[12] Eduardo D. Sontag,et al. Exact computation of amplification for a class of nonlinear systems arising from cellular signaling pathways , 2006, Autom..
[13] Z. Cheng,et al. Linking fast and slow positive feedback loops creates an optimal bistable switch in cell signaling. , 2007, Physical review. E, Statistical, nonlinear, and soft matter physics.
[14] E. Groisman,et al. Response acceleration in post-translationally regulated genetic circuits. , 2010, Journal of molecular biology.
[15] F R Adler,et al. How to make a biological switch. , 2000, Journal of theoretical biology.
[16] Eduardo A. Groisman,et al. Evolution and Dynamics of Regulatory Architectures Controlling Polymyxin B Resistance in Enteric Bacteria , 2008, PLoS genetics.
[17] C. Rao,et al. Control, exploitation and tolerance of intracellular noise , 2002, Nature.
[18] Ravi Iyengar,et al. Robustness of the bistable behavior of a biological signaling feedback loop. , 2001, Chaos.
[19] E. Karsenti,et al. Phosphorylation and activation of human cdc25‐C by cdc2‐‐cyclin B and its involvement in the self‐amplification of MPF at mitosis. , 1993, The EMBO journal.
[20] K. Clark,et al. Pheromone Response in Yeast: Association of Bem1p with Proteins of the MAP Kinase Cascade and Actin , 1995, Science.
[21] M. Peter,et al. Phosphorylation of the Cdc42 exchange factor Cdc24 by the PAK-like kinase Cla4 may regulate polarized growth in yeast. , 2000, Molecular cell.
[22] U. Alon. Network motifs: theory and experimental approaches , 2007, Nature Reviews Genetics.
[23] Onn Brandman,et al. Feedback Loops Shape Cellular Signals in Space and Time , 2008, Science.
[24] Qing Nie,et al. Robust Spatial Sensing of Mating Pheromone Gradients by Yeast Cells , 2008, PloS one.
[25] Lani Wu,et al. Spontaneous Cell Polarization Through Actomyosin-Based Delivery of the Cdc42 GTPase , 2003, Science.
[26] M. Berridge,et al. The versatility and complexity of calcium signalling. , 2008, Novartis Foundation symposium.
[27] J. Thorner,et al. Regulation of G protein-initiated signal transduction in yeast: paradigms and principles. , 2001, Annual review of biochemistry.
[28] L. Serrano,et al. Engineering stability in gene networks by autoregulation , 2000, Nature.
[29] John J. Tyson,et al. Modeling the Cell Division Cycle: M-phase Trigger, Oscillations, and Size Control , 1993 .
[30] V. Hu. The Cell Cycle , 1994, GWUMC Department of Biochemistry Annual Spring Symposia.
[31] David O. Morgan,et al. The Cell Cycle: Principles of Control , 2014 .
[32] Thomas Schmidt,et al. Robust cell polarity is a dynamic state established by coupling transport and GTPase signaling , 2004, The Journal of cell biology.
[33] Sigurd B. Angenent,et al. On the spontaneous emergence of cell polarity , 2008, Nature.
[34] James E. Ferrell,et al. Bistability in cell signaling: How to make continuous processes discontinuous, and reversible processes irreversible. , 2001, Chaos.
[35] Naama Barkai,et al. Noise Propagation and Signaling Sensitivity in Biological Networks: A Role for Positive Feedback , 2007, PLoS Comput. Biol..
[36] Ron Weiss,et al. The effect of negative feedback on noise propagation in transcriptional gene networks. , 2006, Chaos.
[37] Johan Paulsson,et al. Models of stochastic gene expression , 2005 .
[38] Burkhard A. Hense,et al. Sensitivity of the quorum sensing system is achieved by low pass filtering , 2008, Biosyst..
[39] A. Oudenaarden,et al. Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences , 2008, Cell.
[40] Qing Nie,et al. Modeling Robustness Tradeoffs in Yeast Cell Polarization Induced by Spatial Gradients , 2008, PloS one.
[41] Kay Hofmann,et al. A positive feedback loop stabilizes the guanine‐nucleotide exchange factor Cdc24 at sites of polarization , 2002, The EMBO journal.
[42] M. Thattai,et al. Attenuation of noise in ultrasensitive signaling cascades. , 2002, Biophysical journal.
[43] C. Gardiner. Handbook of Stochastic Methods , 1983 .
[44] Benjamin L Turner,et al. Supporting Online Material Materials and Methods Som Text Figs. S1 to S3 Table S1 References Robust, Tunable Biological Oscillations from Interlinked Positive and Negative Feedback Loops , 2022 .
[45] Jin Wang,et al. Potential Energy Landscape and Robustness of a Gene Regulatory Network: Toggle Switch , 2007, PLoS Comput. Biol..
[46] J. Paulsson. Summing up the noise in gene networks , 2004, Nature.
[47] M. L. Simpson,et al. Gene network shaping of inherent noise spectra , 2006, Nature.
[48] G. Papoian,et al. The interplay between discrete noise and nonlinear chemical kinetics in a signal amplification cascade. , 2006, The Journal of chemical physics.
[49] P. Wolynes,et al. The energy landscapes and motions of proteins. , 1991, Science.
[50] M. Freeman. Feedback control of intercellular signalling in development , 2000, Nature.
[51] J. Hasty,et al. Noise-based switches and amplifiers for gene expression. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[52] Marc W. Kirschner,et al. Cyclin activation of p34 cdc2 , 1990, Cell.
[53] George C. Verghese,et al. Operating Regimes of Signaling Cycles: Statics, Dynamics, and Noise Filtering , 2007, PLoS Comput. Biol..
[54] P. R. ten Wolde,et al. Signal detection, modularity, and the correlation between extrinsic and intrinsic noise in biochemical networks. , 2005, Physical review letters.
[55] M. Karin,et al. Mammalian MAP kinase signalling cascades , 2001, Nature.
[56] J. Ferrell,et al. Interlinked Fast and Slow Positive Feedback Loops Drive Reliable Cell Decisions , 2005, Science.
[57] Jonathan S. Marchant,et al. Timing in Cellular Ca2+ Signaling , 2008, Current Biology.
[58] P. Swain,et al. Intrinsic and extrinsic contributions to stochasticity in gene expression , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[59] K. Fujimoto,et al. Noisy signal amplification in ultrasensitive signal transduction. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[60] Javier García-Niebla,et al. Effects of inadequate low-pass filter application. , 2009, Journal of electrocardiology.
[61] G. Wilkinson. The Journal of Laryngology and Otology THE SENSE OF HEARING , 2022 .
[62] E. Groisman,et al. Positive feedback in cellular control systems , 2008, BioEssays : news and reviews in molecular, cellular and developmental biology.
[63] A. Levine,et al. The p53 pathway: positive and negative feedback loops , 2005, Oncogene.
[64] Kwang-Hyun Cho,et al. Coupled positive and negative feedback circuits form an essential building block of cellular signaling pathways. , 2007, BioEssays : news and reviews in molecular, cellular and developmental biology.
[65] Reinhart Heinrich,et al. Mathematical models of protein kinase signal transduction. , 2002, Molecular cell.