Stable self‐assembly of a protein engineering scaffold on gold surfaces

The outer membrane protein OmpF from Escherichia coli is a member of a large family of β‐barrel membrane proteins. Some, like OmpF, are pore‐forming proteins whilse others are active transporters or enzymes. We have previously shown that the receptor‐binding domain (R‐domain) of the toxin colicin N binds with high affinity to OmpF reconstituted into tethered lipid bilayers on gold electrodes. The binding can be measured by surface plasmon resonance (SPR) and ion channel blockage (impedance spectroscopy, IS). In this paper we report the use of a mutant OmpF‐E183C in which a single cysteine had been introduced on a short periplasmic turn. OmpF‐E183C binds directly to gold surfaces and creates high‐density protein layers by self‐assembly from detergent solution. When the gold surface is pretreated with β‐mercaptoethanol and thiolipids are added after the protein immobilisation step, the protein is shown, by Fourier transform infrared spectroscopy (FTIR), to retain its β‐rich structure. Furthermore, we could also measure R‐domain binding by SPR and IS, confirming the functional reconstitution of a self‐assembled membrane protein monolayer at the gold surface. Because these β‐barrel proteins are recognized protein engineering scaffolds, the method provides a generic method for the simple self‐assembly of protein interfaces from aqueous solution.

[1]  H. Vogel,et al.  Formation of stable polypeptide monolayers at interfaces: controlling molecular conformation and orientation. , 1997, Biophysical journal.

[2]  R. Garavito,et al.  The orientation of beta-sheets in porin. A polarized Fourier transform infrared spectroscopic investigation. , 1988, Biophysical journal.

[3]  W F DeGrado,et al.  De novo design, synthesis and characterization of membrane-active peptides. , 2001, Biochemical Society transactions.

[4]  H. Bayley,et al.  Stochastic sensors inspired by biology , 2001, Nature.

[5]  J. Lakey,et al.  Voltage-gating of Escherichia coli porin: a cystine-scanning mutagenesis study of loop 3. , 1998, Journal of molecular biology.

[6]  P. Nollert,et al.  Impedance spectroscopy of porin and gramicidin pores reconstituted into supported lipid bilayers on indium-tin-oxide electrodes , 1998 .

[7]  E Goormaghtigh,et al.  Determination of soluble and membrane protein structure by Fourier transform infrared spectroscopy. I. Assignments and model compounds. , 1994, Sub-cellular biochemistry.

[8]  D N Woolfson,et al.  Core-directed protein design. , 2001, Current opinion in structural biology.

[9]  A. Engel,et al.  Voltage and pH-induced channel closure of porin OmpF visualized by atomic force microscopy. , 1999, Journal of molecular biology.

[10]  S. Tatulian,et al.  Infrared spectroscopy of proteins and peptides in lipid bilayers , 1997, Quarterly Reviews of Biophysics.

[11]  Claus Duschl,et al.  A new class of thiolipids for the attachment of lipid bilayers on gold surfaces , 1994 .

[12]  J. Rosenbusch Characterization of the major envelope protein from Escherichia coli. Regular arrangement on the peptidoglycan and unusual dodecyl sulfate binding. , 1974, The Journal of biological chemistry.

[13]  Claus Duschl,et al.  Protein binding to supported lipid membranes: investigation of the cholera toxin-ganglioside interaction by simultaneous impedance spectroscopy and surface plasmon resonance , 1993 .

[14]  H. Galla,et al.  Impedance analysis of ion transport through gramicidin channels incorporated in solid supported lipid bilayers , 1997 .

[15]  A. Kuhn,et al.  Structural characterization of membrane insertion of M13 procoat, M13 coat, and Pf3 coat proteins. , 1993, Biochemistry.

[16]  J. Lakey,et al.  The TolA-recognition site of colicin N. ITC, SPR and stopped-flow fluorescence define a crucial 27-residue segment. , 2000, Journal of molecular biology.

[17]  E. Goormaghtigh,et al.  Structure and Orientation of Two Voltage-dependent Anion-selective Channel Isoforms , 2000, The Journal of Biological Chemistry.

[18]  A. Skerra Engineered protein scaffolds for molecular recognition , 2000, Journal of molecular recognition : JMR.

[19]  G. Rummel,et al.  Crystal structures explain functional properties of two E. coli porins , 1992, Nature.

[20]  B. Mee,et al.  Structural comparison and epitope analysis of outer-membrane protein PIA from strains of Neisseria gonorrhoeae with differing serovar specificities. , 1993, Journal of general microbiology.

[21]  H. Bayley,et al.  Capture of a single molecule in a nanocavity. , 2001, Science.

[22]  B. Cornell,et al.  A biosensor that uses ion-channel switches , 1997, Nature.

[23]  C. Roumestand,et al.  Scorpion toxins as natural scaffolds for protein engineering. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[24]  J. Lakey,et al.  The central domain of colicin N possesses the receptor recognition site but not the binding affinity of the whole toxin. , 1996, Biochemistry.

[25]  J. Rosenbusch,et al.  Matrix protein from Escherichia coli outer membranes forms voltage-controlled channels in lipid bilayers. , 1978, Proceedings of the National Academy of Sciences of the United States of America.

[26]  H Lång,et al.  Outer membrane proteins as surface display systems. , 2000, International journal of medical microbiology : IJMM.

[27]  J. Rosenbusch,et al.  Two-dimensional crystal packing of matrix porin. A channel forming protein in Escherichia coli outer membranes. , 1983, Journal of molecular biology.

[28]  J. Lakey,et al.  Direct measurement of the association of a protein with a family of membrane receptors. , 1996, Journal of molecular biology.

[29]  J H Lakey,et al.  Emerging techniques for investigating molecular interactions at lipid membranes. , 1998, Biochimica et biophysica acta.

[30]  Sean Conlan,et al.  Stochastic sensing of organic analytes by a pore-forming protein containing a molecular adapter , 1999, Nature.

[31]  Oliver P. Ernst,et al.  Micropatterned immobilization of a G protein–coupled receptor and direct detection of G protein activation , 1999, Nature Biotechnology.

[32]  Horst Vogel,et al.  Chip based biosensor for functional analysis of single ion channels , 2000 .

[33]  A. Engel,et al.  Native Escherichia coli OmpF porin surfaces probed by atomic force microscopy. , 1995, Science.

[34]  Horst Vogel,et al.  Immunosensing by a Synthetic Ligand-Gated Ion Channel Financial support from the board of the Swiss Federal Institutes of Technology (SPP Minast, 7.06) is acknowledged. We thank G. Corradin for numerous discussions and J. Lakey for critical reading of the manuscript. , 2001, Angewandte Chemie.

[35]  D. Marsh Infrared dichroism of twisted beta-sheet barrels. The structure of E. coli outer membrane proteins. , 2000, Journal of molecular biology.

[36]  Horst Vogel,et al.  Ion-Channel Gating in Transmembrane Receptor Proteins: Functional Activity in Tethered Lipid Membranes. , 1999, Angewandte Chemie.

[37]  R. Greenler Infrared Study of Adsorbed Molecules on Metal Surfaces by Reflection Techniques , 1966 .

[38]  G. Whitesides,et al.  Formation of monolayer films by the spontaneous assembly of organic thiols from solution onto gold , 1989 .

[39]  J. Lakey,et al.  The voltage-dependent activity of Escherichia coli porins in different planar bilayer reconstitutions. , 1989, European journal of biochemistry.