Phylogeny and biogeography of the Viola iwagawae-tashiroi species complex (Violaceae, section Plagiostigma) endemic to the Ryukyu Archipelago, Japan

[1]  R. Shinjo,et al.  Palaeogeographic reconstruction of the 1.55 Ma synchronous isolation of the Ryukyu Islands, Japan, and Taiwan and inflow of the Kuroshio warm current , 2012 .

[2]  Y. Qiu,et al.  Late Pleistocene lineage divergence among populations of Neolitsea sericea (Lauraceae) across a deep sea‐barrier in the Ryukyu Islands , 2012 .

[3]  Y. Mitsui,et al.  Recent origin and adaptive diversification of Ainsliaea (Asteraceae) in the Ryukyu Islands: molecular phylogenetic inference using nuclear microsatellite markers , 2012, Plant Systematics and Evolution.

[4]  M. Suchard,et al.  Bayesian Phylogenetics with BEAUti and the BEAST 1.7 , 2012, Molecular biology and evolution.

[5]  Bengt Oxelman,et al.  Inferring Species Networks from Gene Trees in High-Polyploid North American and Hawaiian Violets (Viola, Violaceae) , 2011, Systematic biology.

[6]  Alexei J. Drummond,et al.  Calibrated Tree Priors for Relaxed Phylogenetics and Divergence Time Estimation , 2011, Systematic biology.

[7]  M. Windham,et al.  Establishing the phylogenetic origin, history, and age of the narrow endemic Viola guadalupensis (Violaceae). , 2011, American journal of botany.

[8]  Akifumi S. Tanabe,et al.  Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data , 2011, Molecular ecology resources.

[9]  K. Yoo,et al.  Infrageneric relationships of Korean Viola based on eight chloroplast markers , 2010 .

[10]  Rempei Suwa,et al.  Phylogeography of Ophiorrhiza japonica (Rubiaceae) in continental islands, the Ryukyu Archipelago, Japan , 2010 .

[11]  A. Drummond,et al.  Bayesian Inference of Species Trees from Multilocus Data , 2009, Molecular biology and evolution.

[12]  Zhang Yongxia,et al.  Molecular Systematics of Genus Viola L. in China , 2010 .

[13]  Xing Fuwu,et al.  Infrageneric phylogeny of the genus Viola (Violaceae) based on trnL-trnF, psbA-trnH, rpl16, ITS sequences, cytological and morphological data. , 2010 .

[14]  K. Jakobsen,et al.  Evolution of plant RNA polymerase IV/V genes: evidence of subneofunctionalization of duplicated NRPD2/NRPE2-like paralogs in Viola (Violaceae) , 2010, BMC Evolutionary Biology.

[15]  Rempei Suwa,et al.  Geohistorical and current environmental influences on floristic differentiation in the Ryukyu Archipelago, Japan , 2009 .

[16]  T. Ozawa,et al.  Vegetation change in the main island of Okinawa, southern Japan from late Pliocene to early Pleistocene , 2008 .

[17]  A. Rambaut,et al.  BEAST: Bayesian evolutionary analysis by sampling trees , 2007, BMC Evolutionary Biology.

[18]  Joey Shaw,et al.  Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. , 2007, American journal of botany.

[19]  H. Ota.  Geographic patterns of endemism and speciation in amphibians and reptiles of the Ryukyu Archipelago, Japan, with special reference to their paleogeographical implications , 1998, Researches on Population Ecology.

[20]  S. Ho,et al.  Relaxed Phylogenetics and Dating with Confidence , 2006, PLoS biology.

[21]  T. Kajita,et al.  Chloroplast DNA variation and geographical structure of the Aristolochia kaempferi group (Aristolochiaceae). , 2006, American journal of botany.

[22]  H. Comes,et al.  Evolutionary processes in a continental island system: molecular phylogeography of the Aegean Nigella arvensis alliance (Ranunculaceae) inferred from chloroplast DNA , 2005, Molecular ecology.

[23]  O. Pybus,et al.  Bayesian coalescent inference of past population dynamics from molecular sequences. , 2005, Molecular biology and evolution.

[24]  K. Yoo,et al.  Phylogeny of Korean Viola based on ITS sequences , 2005 .

[25]  J. Shaw,et al.  The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. , 2005, American journal of botany.

[26]  M. Hotta,et al.  Geographical Patterns of Allozyme Variation in Angelica japonica (Umbelliferae) and Farfugium japonicum (Compositae) on the Ryukyu Islands, Japan , 2004 .

[27]  T. Yagi,et al.  Biogeography of the subspecies of Parides (Byasa) alcinous (Lepidoptera: Papilionidae) based on a phylogenetic analysis of mitochondrial ND5 sequences , 2004 .

[28]  P. Lymberakis,et al.  Molecular phylogeny and biogeography of the wall-lizard Podarcis erhardii (Squamata: Lacertidae). , 2003, Molecular phylogenetics and evolution.

[29]  T. Hikida,et al.  Genetic Variation and Differentiation in the Japanese Five-Lined Skink, Eumeces latiscutatus (Reptilia: Squamata) , 2003, Zoological science.

[30]  D. Swofford.  PAUP*: Phylogenetic analysis using parsimony (*and other methods), Version 4.0b10 , 2002 .

[31]  M. Hotta,et al.  Allozyme variation of the three varieties of "Peucedanum japonicum" Thunb. in Japan , 2001 .

[32]  M. Hasegawa,et al.  Intraspecific phylogeny and geographical variation of six species of northeastern Asiatic Sorex shrews based on the mitochondrial cytochrome b sequences , 2001, Molecular ecology.

[33]  Chi Wei Huang,et al.  Biogeography and origin of Lilium longiflorum and L. formosanum (Liliaceae) endemic to the Ryukyu Archipelago and Taiwan as determined by allozyme diversity. , 2001, American journal of botany.

[34]  Q. Cronk,et al.  A molecular test of Huxley's line Cyrtandra (Gesneriaceae) in Borneo and the Philippines , 2001 .

[35]  K. Crandall,et al.  TCS: a computer program to estimate gene genealogies , 2000, Molecular ecology.

[36]  K. Sytsma,et al.  EVOLUTION AND BIOGEOGRAPHY OF THE WOODY HAWAIIAN VIOLETS (VIOLA, VIOLACEAE): ARCTIC ORIGINS, HERBACEOUS ANCESTRY AND BIRD DISPERSAL , 2000, Evolution; international journal of organic evolution.

[37]  Mark P. Simmons,et al.  Gaps as characters in sequence-based phylogenetic analyses. , 2000, Systematic biology.

[38]  T. Miura,et al.  Molecular phylogeny and geographic distribution of wood-feeding cockroaches in East Asian Islands. , 1999, Molecular phylogenetics and evolution.

[39]  T. A. Hall,et al.  BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT , 1999 .

[40]  M. Westerman,et al.  Biogeography of the Indonesian archipelago: mitochondrial DNA variation in the fruit bat, Eonycteris spelaea , 1998 .

[41]  K. Sytsma,et al.  Shrinking the Violets: Phylogenetic Relationships of Infrageneric Groups in Viola (Violaceae) Based on Internal Transcribed Spacer DNA Sequences , 1998 .

[42]  J. Thompson,et al.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. , 1997, Nucleic acids research.

[43]  H. Ota,et al.  Genetic Variation among Insular Populations of Gekko hokouensis (Reptilia: Squamata) near the Northeastern Borders of the Oriental and Palearctic Zoogeographic Regions in the Northern Ryukyus, Japan , 1997 .

[44]  H. Ota,et al.  Biochemical systematics of the Latiscutatus species-group of the genus Eumeces (Scincidae: Reptilia) from east asian islands , 1994 .

[45]  M. Koba.  Influx of the Kuroshio Current into the Okinawa Trough and Inauguration of Quaternary Coral-Reef Building in the Ryukyu Island Arc, Japan , 1992 .

[46]  B S Weir,et al.  Testing for equality of evolutionary rates. , 1992, Genetics.

[47]  Tseng-chieng Huang,et al.  Notes on the flora of Taiwan (9) - the Viola L. (Violaceae). , 1990 .

[48]  Thomas J. White,et al.  PCR protocols: a guide to methods and applications. , 1990 .

[49]  T. White.  Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics , 1990 .

[50]  A. Coleman,et al.  Rapid screening method to detect potential biparental inheritance of plastid DNA and results for over 200 angiosperm species , 1988 .

[51]  J. Felsenstein.  Phylogenies from molecular sequences: inference and reliability. , 1988, Annual review of genetics.

[52]  J. Felsenstein.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP , 1985, Evolution; international journal of organic evolution.

[53]  E. Pahlich,et al.  A rapid DNA isolation procedure for small quantities of fresh leaf tissue , 1980 .

[54]  岩槻 邦男.  WALKER, E. B., Flora of Okinawa and the Southern Ryukyu Islands 1976, Smithsonian Inst, $36. 75. , 1976 .

[55]  E. H. Walker.  Flora of Okinawa and the southern Ryukyu Islands , 1976 .

[56]  M. Numata,et al.  The Flora and Vegetation of Japan , 1975 .

[57]  F. Maekawa.  Origin and characteristics of Japan's flora. , 1974 .

[58]  沼田 真.  The flora and vegetation of Japan , 1974 .

[59]  E. Merrill.  An enumeration of Philippine flowering plants , 1923 .