The Morphostatic Limit for a Model of Skeletal Pattern Formation in the Vertebrate Limb

Abstract A recently proposed mathematical model of a “core” set of cellular and molecular interactions present in the developing vertebrate limb was shown to exhibit pattern-forming instabilities and limb skeleton-like patterns under certain restrictive conditions, suggesting that it may authentically represent the underlying embryonic process (Hentschel et al., Proc. R. Soc. B 271, 1713–1722, 2004). The model, an eight-equation system of partial differential equations, incorporates the behavior of mesenchymal cells as “reactors,” both participating in the generation of morphogen patterns and changing their state and position in response to them. The full system, which has smooth solutions that exist globally in time, is nonetheless highly complex and difficult to handle analytically or numerically. According to a recent classification of developmental mechanisms (Salazar-Ciudad et al., Development 130, 2027–2037, 2003), the limb model of Hentschel et al. is “morphodynamic,” since differentiation of new cell types occurs simultaneously with cell rearrangement. This contrasts with “morphostatic” mechanisms, in which cell identity becomes established independently of cell rearrangement. Under the hypothesis that development of some vertebrate limbs employs the core mechanism in a morphostatic fashion, we derive in an analytically rigorous fashion a pair of equations representing the spatiotemporal evolution of the morphogen fields under the assumption that cell differentiation relaxes faster than the evolution of the overall cell density (i.e., the morphostatic limit of the full system). This simple reaction–diffusion system is unique in having been derived analytically from a substantially more complex system involving multiple morphogens, extracellular matrix deposition, haptotaxis, and cell translocation. We identify regions in the parameter space of the reduced system where Turing-type pattern formation is possible, which we refer to as its “Turing space.” Obtained values of the parameters are used in numerical simulations of the reduced system, using a new Galerkin finite element method, in tissue domains with nonstandard geometry. The reduced system exhibits patterns of spots and stripes like those seen in developing limbs, indicating its potential utility in hybrid continuum-discrete stochastic modeling of limb development. Lastly, we discuss the possible role in limb evolution of selection for increasingly morphostatic developmental mechanisms.

[1]  D. Prowe Berlin , 1855, Journal of public health, and sanitary review.

[2]  S A Newman,et al.  Lineage and pattern in the developing vertebrate limb. , 1988, Trends in genetics : TIG.

[3]  S A Newman,et al.  The mechanism of precartilage mesenchymal condensation: a major role for interaction of the cell surface with the amino-terminal heparin-binding domain of fibronectin. , 1989, Developmental biology.

[4]  Chi-Wang Shu,et al.  TVB Runge-Kutta local projection discontinuous galerkin finite element method for conservation laws. II: General framework , 1989 .

[5]  P. van den Driessche,et al.  Some remarks on matrix stability with application to Turing instability , 2005 .

[6]  R. Tuan,et al.  The region encoded by the alternatively spliced exon IIIA in mesenchymal fibronectin appears essential for chondrogenesis at the level of cellular condensation. , 1997, Developmental biology.

[7]  Chi-Wang Shu,et al.  A discontinuous Galerkin finite element method for time dependent partial differential equations with higher order derivatives , 2007, Math. Comput..

[8]  Farish A. Jenkins,et al.  A Devonian tetrapod-like fish and the evolution of the tetrapod body plan , 2006, Nature.

[9]  Chia-Ven Pao,et al.  Nonlinear parabolic and elliptic equations , 1993 .

[10]  Isaac Salazar-Ciudad,et al.  On the origins of morphological disparity and its diverse developmental bases. , 2006, BioEssays : news and reviews in molecular, cellular and developmental biology.

[11]  Marcos González-Gaitán,et al.  Gradient Formation of the TGF-β Homolog Dpp , 2000, Cell.

[12]  Aleksander S. Popel,et al.  A Reaction-Diffusion Model of Basic Fibroblast Growth Factor Interactions with Cell Surface Receptors , 2004, Annals of Biomedical Engineering.

[13]  Philippe Montcourrier,et al.  Delta-promoted filopodia mediate long-range lateral inhibition in Drosophila , 2003, Nature.

[14]  A. M. Turing,et al.  The chemical basis of morphogenesis , 1952, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences.

[15]  G. Müller,et al.  Origination of organismal form : beyond the gene in developmental and evolutionary biology , 2003 .

[16]  Yi Jiang,et al.  On Cellular Automaton Approaches to Modeling Biological Cells , 2003, Mathematical Systems Theory in Biology, Communications, Computation, and Finance.

[17]  Roeland M. H. Merks,et al.  A cell-centered approach to developmental biology , 2005 .

[18]  G. Martin,et al.  The roles of FGFs in the early development of vertebrate limbs. , 1998, Genes & development.

[19]  C. Waddington Canalization of Development and the Inheritance of Acquired Characters , 1942, Nature.

[20]  Gerhard Dangelmayr,et al.  Dynamics and bifurcation of patterns in dissipative systems , 2004 .

[21]  G. Forgacs,et al.  Biological Physics of the Developing Embryo , 2005 .

[22]  M. Coates,et al.  Polydactyly in the earliest known tetrapod limbs , 1990, Nature.

[23]  Stuart A. Newman,et al.  Complexity and Self-Organization in Biological Development and Evolution , 2005 .

[24]  Chi-Wang Shu,et al.  TVB Runge-Kutta local projection discontinuous Galerkin finite element method for conservation laws III: one-dimensional systems , 1989 .

[25]  Jesús A. Izaguirre,et al.  A framework for three-dimensional simulation of morphogenesis , 2005, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

[26]  Chi-Wang Shu,et al.  The Runge-Kutta Discontinuous Galerkin Method for Conservation Laws V , 1998 .

[27]  K. Shiota,et al.  TGFβ2 acts as an “Activator” molecule in reaction‐diffusion model and is involved in cell sorting phenomenon in mouse limb micromass culture , 2000, Developmental dynamics : an official publication of the American Association of Anatomists.

[28]  James A Glazier,et al.  Dynamical mechanisms for skeletal pattern formation in the vertebrate limb , 2004, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[29]  R. Solé,et al.  Phenotypic and dynamical transitions in model genetic networks I. Emergence of patterns and genotype‐phenotype relationships , 2001, Evolution & development.

[30]  Stuart A Newman,et al.  Origination and innovation in the vertebrate limb skeleton: an epigenetic perspective. , 2005, Journal of experimental zoology. Part B, Molecular and developmental evolution.

[31]  P. Alberch,et al.  Size dependence during the development of the amphibian foot. Colchicine-induced digital loss and reduction. , 1983, Journal of embryology and experimental morphology.

[32]  Arthur D Lander,et al.  Morpheus Unbound: Reimagining the Morphogen Gradient , 2007, Cell.

[33]  S A Newman,et al.  On multiscale approaches to three-dimensional modelling of morphogenesis , 2005, Journal of The Royal Society Interface.

[34]  Jesús A. Izaguirre,et al.  COMPUCELL, a multi-model framework for simulation of morphogenesis , 2004, Bioinform..

[35]  M. Gonzalez-Gaitan,et al.  Visualizing Long-Range Movement of the Morphogen Xnr2 in the Xenopus Embryo , 2004, Current Biology.

[36]  Isaac Salazar-Ciudad,et al.  Mechanisms of pattern formation in development and evolution , 2003, Development.

[37]  Yina Li,et al.  Shh and Gli3 are dispensable for limb skeleton formation but regulate digit number and identity , 2002, Nature.

[38]  M. Millonas,et al.  The role of trans-membrane signal transduction in turing-type cellular pattern formation. , 2004, Journal of theoretical biology.

[39]  Chi-Wang Shu,et al.  The Runge-Kutta local projection discontinuous Galerkin finite element method for conservation laws. IV. The multidimensional case , 1990 .

[40]  I. Salazar-Ciudad,et al.  Graduality and innovation in the evolution of complex phenotypes: insights from development. , 2005, Journal of experimental zoology. Part B, Molecular and developmental evolution.

[41]  Qing Nie,et al.  Do morphogen gradients arise by diffusion? , 2002, Developmental cell.

[42]  Takashi Miura,et al.  Modelling in vitro lung branching morphogenesis during development. , 2006, Journal of theoretical biology.

[43]  R. L. Searls,et al.  A description of chick wing bud development and a model of limb morphogenesis. , 1973, Developmental biology.

[44]  P. Maini,et al.  Pattern formation in reaction-diffusion models with nonuniform domain growth , 2002, Bulletin of mathematical biology.

[45]  Stuart A. Newman,et al.  Existence of solutions to a new model of biological pattern formation , 2005 .

[46]  Philip K Maini,et al.  Mixed-mode pattern in Doublefoot mutant mouse limb--Turing reaction-diffusion model on a growing domain during limb development. , 2006, Journal of theoretical biology.

[47]  Stuart A Newman,et al.  Ectodermal FGFs induce perinodular inhibition of limb chondrogenesis in vitro and in vivo via FGF receptor 2. , 2002, Developmental biology.

[48]  H L Frisch,et al.  Dynamics of skeletal pattern formation in developing chick limb. , 1979, Science.

[49]  G. W. Cross Three types of matrix stability , 1978 .

[50]  J. Cooke,et al.  Control of growth related to pattern specification in chick wing-bud mesenchyme. , 1981, Journal of embryology and experimental morphology.

[51]  Farish A. Jenkins,et al.  The pectoral fin of Tiktaalik roseae and the origin of the tetrapod limb , 2006, Nature.

[52]  Stuart A. Newman,et al.  Stability of n-dimensional patterns in a generalized Turing system: implications for biological pattern formation , 2005 .

[53]  Mark Alber,et al.  BIOLOGICAL LATTICE GAS MODELS , 2004 .

[54]  P K Maini,et al.  Pattern formation in a generalized chemotactic model , 1998, Bulletin of mathematical biology.

[55]  P. Hogeweg,et al.  How amoeboids self-organize into a fruiting body: Multicellular coordination in Dictyostelium discoideum , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[56]  Anoop Kumar,et al.  Appendage Regeneration in Adult Vertebrates and Implications for Regenerative Medicine , 2005, Science.

[57]  Philip K. Maini,et al.  Speed of pattern appearance in reaction-diffusion models: Implications in the pattern formation of limb bud mesenchyme cells , 2004, Bulletin of mathematical biology.

[58]  A. Wagner Robustness and Evolvability in Living Systems , 2005 .

[59]  M. Scott,et al.  Incredible journey: how do developmental signals travel through tissue? , 2004, Genes & development.

[60]  Michael J. Lyons,et al.  Stripe selection: An intrinsic property of some pattern‐forming models with nonlinear dynamics , 1992, Developmental dynamics : an official publication of the American Association of Anatomists.

[61]  Chi-Wang Shu,et al.  The Runge-Kutta local projection $P^1$-discontinuous-Galerkin finite element method for scalar conservation laws , 1988, ESAIM: Mathematical Modelling and Numerical Analysis.

[62]  Stuart A. Newman,et al.  Role of transforming growth factor-β in chondrogenic pattern formation in the embryonic limb: Stimulation of mesenchymal condensation and fibronectin gene expression by exogenenous TGF-β and evidence for endogenous TGF-β-like activity , 1991 .

[63]  Daniel A Fletcher,et al.  Tissue Geometry Determines Sites of Mammary Branching Morphogenesis in Organotypic Cultures , 2006, Science.

[64]  Y. Toyama,et al.  Involvement of Notch signaling in initiation of prechondrogenic condensation and nodule formation in limb bud micromass cultures , 2006, Journal of Bone and Mineral Metabolism.

[65]  Chi-Wang Shu,et al.  The Local Discontinuous Galerkin Method for Time-Dependent Convection-Diffusion Systems , 1998 .

[66]  D. Wake,et al.  Limb chondrogenesis of the seepage salamander, Desmognathus aeneus (Amphibia: Plethodontidae) , 2005, Journal of morphology.

[67]  J. Hinchliffe Developmental basis of limb evolution. , 2002, The International journal of developmental biology.

[68]  P. Maini,et al.  Turing instabilities in general systems , 2000, Journal of mathematical biology.

[69]  B. Sleeman,et al.  On the spread of morphogens , 2005, Journal of mathematical biology.

[70]  N. Rashevsky,et al.  Mathematical biology , 1961, Connecticut medicine.

[71]  G. Schubiger,et al.  Stem Cell Plasticity in Mammals and Transdetermination in Drosophila: Common Themes? , 2000, Stem cells.

[72]  Vladimir Zykov,et al.  Dynamics of spiral waves under global feedback in excitable domains of different shapes. , 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.

[73]  C. Tickle,et al.  Patterning systems--from one end of the limb to the other. , 2003, Developmental cell.

[74]  Frietson Galis Gerd B. Müller and Stuart A. Newman (Eds) (2003). Origination of Organismal Form. Beyond the Gene in Developmental and Evolutionary Biology , 2003 .

[75]  S. Bryant,et al.  A stepwise model system for limb regeneration. , 2004, Developmental biology.

[76]  Takashi Miura,et al.  Depletion of FGF acts as a lateral inhibitory factor in lung branching morphogenesis in vitro , 2002, Mechanisms of Development.

[77]  K. Shiota,et al.  Extracellular matrix environment influences chondrogenic pattern formation in limb bud micromass culture: Experimental verification of theoretical models , 2000, The Anatomical record.

[78]  Claes Johnson Numerical solution of partial differential equations by the finite element method , 1988 .

[79]  Bernardo Cockburn,et al.  The Runge-Kutta local projection P1-discontinuous-Galerkin finite element method for scalar conservation laws , 1988 .