Inferring transposons activity chronology by TRANScendence – TEs database and de-novo mining tool

[1]  A. Gambin,et al.  MuTAnT: a family of Mutator-like transposable elements targeting TA microsatellites in Medicago truncatula , 2015, Genetica.

[2]  P. Capy,et al.  Genomic parasites or symbionts? Modeling the effects of environmental pressure on transposition activity in asexual populations. , 2013, Theoretical population biology.

[3]  S. Ramachandran,et al.  Genome-Wide Survey and Comparative Analysis of LTR Retrotransposons and Their Captured Genes in Rice and Sorghum , 2013, PloS one.

[4]  T. Flutre,et al.  Considering Transposable Element Diversification in De Novo Annotation Approaches , 2011, PloS one.

[5]  E. Lerat Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs , 2010, Heredity.

[6]  J. Jurka,et al.  A universal classification of eukaryotic transposable elements implemented in Repbase , 2008, Nature Reviews Genetics.

[7]  Roger P Wise,et al.  TEnest: Automated Chronological Annotation and Visualization of Nested Plant Transposable Elements1[W][OA] , 2007, Plant Physiology.

[8]  C. Bergman,et al.  Recent LTR retrotransposon insertion contrasts with waves of non-LTR insertion since speciation in Drosophila melanogaster , 2007, Proceedings of the National Academy of Sciences.

[9]  Gary Benson,et al.  Evolutionary History of Mammalian Transposons Determined by Genome-Wide Defragmentation , 2007, PLoS Comput. Biol..

[10]  Zhao Xu,et al.  LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons , 2007, Nucleic Acids Res..

[11]  Maureen J Donlin,et al.  Using the Generic Genome Browser (GBrowse) , 2007, Current protocols in bioinformatics.

[12]  S. Wessler,et al.  The Transposable Element Landscape of the Model Legume Lotus japonicus , 2006, Genetics.

[13]  E. Birney,et al.  Apollo: a sequence annotation editor , 2002, Genome Biology.

[14]  Sudhir Kumar,et al.  MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers , 1994, Comput. Appl. Biosci..

[15]  P. Bingham,et al.  On the theory of speciation induced by transposable elements. , 1984, Genetics.

[16]  Robert E. Tarjan,et al.  Depth-First Search and Linear Graph Algorithms , 1972, SIAM J. Comput..

[17]  Richard M. Karp,et al.  Reducibility Among Combinatorial Problems , 1972, 50 Years of Integer Programming.