Metabolic systems biology
暂无分享,去创建一个
Bernhard O. Palsson | Nathan E. Lewis | Ines Thiele | Neema Jamshidi | B. Palsson | N. Jamshidi | I. Thiele | N. Lewis
[1] Jason A. Papin,et al. Applications of genome-scale metabolic reconstructions , 2009, Molecular systems biology.
[2] Tom M. Conrad,et al. Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations , 2009, Genome Biology.
[3] Hans Lehrach,et al. Metabolic reconfiguration precedes transcriptional regulation in the antioxidant response , 2009, Nature Biotechnology.
[4] L. Cantley,et al. Understanding the Warburg Effect: The Metabolic Requirements of Cell Proliferation , 2009, Science.
[5] Bernhard O. Palsson,et al. Gene Expression Profiling and the Use of Genome-Scale In Silico Models of Escherichia coli for Analysis: Providing Context for Content , 2009, Journal of bacteriology.
[6] M. Mann,et al. Global and site-specific quantitative phosphoproteomics: principles and applications. , 2009, Annual review of pharmacology and toxicology.
[7] Vinay Satish Kumar,et al. GrowMatch: An Automated Method for Reconciling In Silico/In Vivo Growth Predictions , 2009, PLoS Comput. Biol..
[8] Ronan M. T. Fleming,et al. Genome-Scale Reconstruction of Escherichia coli's Transcriptional and Translational Machinery: A Knowledge Base, Its Mathematical Formulation, and Its Functional Characterization , 2009, PLoS Comput. Biol..
[9] Adam M. Feist,et al. Reconstruction of biochemical networks in microorganisms , 2009, Nature Reviews Microbiology.
[10] V. Schachter,et al. Genome-scale models of bacterial metabolism: reconstruction and applications , 2008, FEMS microbiology reviews.
[11] S. Lee,et al. Towards systems metabolic engineering of microorganisms for amino acid production. , 2008, Current opinion in biotechnology.
[12] Markus J. Herrgård,et al. Network-based prediction of human tissue-specific metabolism , 2008, Nature Biotechnology.
[13] Adam M. Feist,et al. The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli , 2008, Nature Biotechnology.
[14] B. Palsson,et al. Formulating genome-scale kinetic models in the post-genome era , 2008, Molecular systems biology.
[15] D. Vitkup,et al. New surveyor tools for charting microbial metabolic maps , 2008, Nature Reviews Microbiology.
[16] Uwe Sauer,et al. Computational Prediction and Experimental Verification of the Gene Encoding the NAD+/NADP+-Dependent Succinate Semialdehyde Dehydrogenase in Escherichia coli , 2007, Journal of bacteriology.
[17] Adam M. Feist,et al. A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information , 2007, Molecular systems biology.
[18] Ronan M. T. Fleming,et al. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0 , 2007, Nature Protocols.
[19] B. Palsson,et al. Systems approach to refining genome annotation , 2006, Proceedings of the National Academy of Sciences.
[20] Anu Raghunathan,et al. Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale , 2006, Nature Genetics.
[21] B. Palsson,et al. Towards multidimensional genome annotation , 2006, Nature Reviews Genetics.
[22] B. Palsson. Systems Biology: Properties of Reconstructed Networks , 2006 .
[23] Jens Nielsen,et al. Evolutionary programming as a platform for in silico metabolic engineering , 2005, BMC Bioinformatics.
[24] U. Sauer,et al. Large-scale in vivo flux analysis shows rigidity and suboptimal performance of Bacillus subtilis metabolism , 2005, Nature Genetics.
[25] Justin A. Ionita,et al. Exploring the diversity of complex metabolic networks , 2005, Bioinform..
[26] Costas D Maranas,et al. OptStrain: a computational framework for redesign of microbial production systems. , 2004, Genome research.
[27] B. Palsson,et al. Genome-scale models of microbial cells: evaluating the consequences of constraints , 2004, Nature Reviews Microbiology.
[28] Bernhard Palsson,et al. Two-dimensional annotation of genomes , 2004, Nature Biotechnology.
[29] Stephen S Fong,et al. Metabolic gene–deletion strains of Escherichia coli evolve to computationally predicted growth phenotypes , 2004, Nature Genetics.
[30] Harvey J. Greenberg,et al. Reconstruction and Functional Characterization of the Human Mitochondrial Metabolic Network Based on Proteomic and Biochemical Data* , 2004, Journal of Biological Chemistry.
[31] Jason A. Papin,et al. The JAK-STAT signaling network in the human B-cell: an extreme signaling pathway analysis. , 2004, Biophysical journal.
[32] A. Burgard,et al. Optknock: A bilevel programming framework for identifying gene knockout strategies for microbial strain optimization , 2003, Biotechnology and bioengineering.
[33] B. Palsson,et al. Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth , 2002, Nature.
[34] B. Palsson,et al. The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[35] J. Edwards,et al. Systems Properties of the Haemophilus influenzaeRd Metabolic Genotype* , 1999, The Journal of Biological Chemistry.
[36] R. Fleischmann,et al. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. , 1995, Science.
[37] J. Bailey,et al. Toward a science of metabolic engineering , 1991, Science.
[38] B. Palsson,et al. A protocol for generating a high-quality genome-scale metabolic reconstruction , 2010, Nature Protocols.
[39] D. Petranovic,et al. Insights from site-specific phosphoproteomics in bacteria. , 2008, Biochimica et biophysica acta.
[40] Adam M. Feist,et al. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox , 2007, Nature Protocols.
[41] N. Jamshidi,et al. Systems biology of SNPs , 2006, Molecular systems biology.
[42] J. Shendure,et al. Materials and Methods Som Text Figs. S1 and S2 Tables S1 to S4 References Accurate Multiplex Polony Sequencing of an Evolved Bacterial Genome , 2022 .
[43] Christian L. Barrett,et al. Meta-structure of a Bacterial Genome , 2022 .