Feature Analysis and De-noising of MRS Data Based on Pattern Recognition and Wavelet Transform

De-noising the MRS data is a key processing in analysis of spectroscopy MRS data. This paper presents an effective method based on wavelet-transform and pattern recognition technologies. Upon the characteristics of MRS data, a new wavelet basis function was designed, and a de-noising method of free induction decay (FID) data using wavelet threshold to obtain better MRS spectrums was conduced; hence, the features of some cancers from MRS spectrums based on independent component analysis (ICA) and support vector machine (SVM) were extended. Comparing with the de-nosing effect using conventional wavelet basis functions, experiments were conducted to validate that the innovative feature extraction method employing ICA and a new wavelet filter set has higher and better performance. Experiments in this study were carried out on a small amount of real and low SNR dataset that obtained from the GE NMR device. The experimental results showed that the proposed de-nosing method improves its efficiency of feature extraction significantly

[1]  G. Hagberg,et al.  From magnetic resonance spectroscopy to classification of tumors. A review of pattern recognition methods , 1998, NMR in biomedicine.

[2]  C Boesch,et al.  Versatile frequency domain fitting using time domain models and prior knowledge , 1998, Magnetic resonance in medicine.

[3]  R. Kreis Issues of spectral quality in clinical 1H‐magnetic resonance spectroscopy and a gallery of artifacts , 2004, NMR in biomedicine.

[4]  W. El-Deredy,et al.  Pattern recognition approaches in biomedical and clinical magnetic resonance spectroscopy: a review , 1997, NMR in biomedicine.

[5]  S. Huffel,et al.  MR spectroscopy quantitation: a review of time‐domain methods , 2001, NMR in biomedicine.

[6]  Christophe Ladroue,et al.  Independent component analysis for automated decomposition of in vivo magnetic resonance spectra , 2003, Magnetic resonance in medicine.

[7]  Pei-yan Fei,et al.  Image denoising based on the dyadic wavelet transform , 2003, Proceedings Fifth International Conference on Computational Intelligence and Multimedia Applications. ICCIMA 2003.

[8]  J. Hogg Magnetic resonance imaging. , 1994, Journal of the Royal Naval Medical Service.

[9]  Jos B. T. M. Roerdink,et al.  Denoising functional MR images: a comparison of wavelet denoising and Gaussian smoothing , 2004, IEEE Transactions on Medical Imaging.

[10]  Zengqi Sun,et al.  Wavelet Denoise on MRS Data Based on ICA and PCA , 2005, ISNN.

[11]  J Higinbotham,et al.  Use of voigt lineshape for quantification of in vivo 1H spectra , 1997, Magnetic resonance in medicine.

[12]  C Chauvin,et al.  Wavelets and related time‐frequency techniques in magnetic resonance spectroscopy , 2001, NMR in biomedicine.

[13]  S. Cerutti,et al.  A wavelet packets decomposition algorithm for quantification of in vivo (1)H-MRS parameters. , 2002, Medical engineering & physics.