Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1.
暂无分享,去创建一个
Lennart Martens | Henning Hermjakob | Ruedi Aebersold | Lydie Lane | William S Hancock | Eric W Deutsch | Gilbert S Omenn | Yves Vandenbrouck | Robert L Moritz | Ulrike Kusebauch | Young-Ki Paik | Mark S Baker | Jennifer E Van Eyk | Susan T Weintraub | Christopher M Overall | R. Aebersold | U. Kusebauch | R. Moritz | G. Omenn | H. Hermjakob | E. Deutsch | W. Hancock | C. Overall | M. Baker | S. Weintraub | J. V. Van Eyk | L. Martens | Y. Paik | Lydie Lane | Y. Vandenbrouck
[1] Lennart Martens,et al. PRIDE: The proteomics identifications database , 2005, Proteomics.
[2] Hyungwon Choi,et al. False discovery rates and related statistical concepts in mass spectrometry-based proteomics. , 2008, Journal of proteome research.
[3] A. Makarov,et al. Discrimination of leucine and isoleucine in peptides sequencing with Orbitrap Fusion mass spectrometer. , 2014, Analytical chemistry.
[4] Susan E. Abbatiello,et al. Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry-based Assay Development Using a Fit-for-Purpose Approach* , 2014, Molecular & Cellular Proteomics.
[5] R. Aebersold,et al. A statistical model for identifying proteins by tandem mass spectrometry. , 2003, Analytical chemistry.
[6] G. Damonte,et al. How to discriminate between leucine and isoleucine by low energy ESI-TRAP MSn , 2007, Journal of the American Society for Mass Spectrometry.
[7] Ying Zhang,et al. The neXtProt knowledgebase on human proteins: current status , 2014, Nucleic Acids Res..
[8] John R Yates,et al. Mass spectrometry in high-throughput proteomics: ready for the big time , 2010, Nature Methods.
[9] R. Aebersold,et al. Mass spectrometry-based proteomics , 2003, Nature.
[10] Ludovic C. Gillet,et al. Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis* , 2012, Molecular & Cellular Proteomics.
[11] U. Eckhard,et al. Protein Termini and Their Modifications Revealed by Positional Proteomics. , 2015, ACS chemical biology.
[12] A. Nesvizhskii. Proteogenomics: concepts, applications and computational strategies , 2014, Nature Methods.
[13] Steven P Gygi,et al. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry , 2007, Nature Methods.
[14] William S Hancock,et al. Recent Advances in the Chromosome-Centric Human Proteome Project: Missing Proteins in the Spot Light. , 2015, Journal of proteome research.
[15] David D. Shteynberg,et al. State of the Human Proteome in 2014/2015 As Viewed through PeptideAtlas: Enhancing Accuracy and Coverage through the AtlasProphet. , 2015, Journal of proteome research.
[16] Martin Eisenacher,et al. The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results , 2012, Molecular & Cellular Proteomics.
[17] S. Carr,et al. Reporting Protein Identification Data , 2006, Molecular & Cellular Proteomics.
[18] Mathias Wilhelm,et al. A Scalable Approach for Protein False Discovery Rate Estimation in Large Proteomic Data Sets , 2015, Molecular & Cellular Proteomics.
[19] A. Nesvizhskii. A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics. , 2010, Journal of proteomics.
[20] Nichole L. King,et al. The PeptideAtlas Project , 2010, Proteome Bioinformatics.
[21] R. Aebersold,et al. Selected reaction monitoring–based proteomics: workflows, potential, pitfalls and future directions , 2012, Nature Methods.
[22] Martin Eisenacher,et al. Development of data representation standards by the human proteome organization proteomics standards initiative , 2015, J. Am. Medical Informatics Assoc..
[23] Nichole L. King,et al. Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry , 2004, Genome Biology.
[24] Andrew R. Jones,et al. ProteomeXchange provides globally co-ordinated proteomics data submission and dissemination , 2014, Nature Biotechnology.
[25] Li Ding,et al. An Analysis of the Sensitivity of Proteogenomic Mapping of Somatic Mutations and Novel Splicing Events in Cancer* , 2015, Molecular & Cellular Proteomics.
[26] Lennart Martens,et al. The minimum information about a proteomics experiment (MIAPE) , 2007, Nature Biotechnology.
[27] Henry H. N. Lam,et al. Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics. , 2008, Physiological genomics.
[28] Luis Mendoza,et al. PASSEL: The PeptideAtlas SRMexperiment library , 2012, Proteomics.
[29] Juan Antonio Vizcaíno,et al. Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project. , 2015, Journal of proteome research.
[30] Alexey I Nesvizhskii,et al. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. , 2002, Analytical chemistry.
[31] Steven A. Carr,et al. On Credibility, Clarity, and Compliance , 2015, Molecular & Cellular Proteomics.
[32] S. Hanash,et al. The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome , 2012, Nature Biotechnology.
[33] Theodoros Goulas,et al. LysargiNase mirrors trypsin for protein C-terminal and methylation-site identification , 2014, Nature Methods.
[34] Juan Antonio Vizcaíno,et al. How to submit MS proteomics data to ProteomeXchange via the PRIDE database , 2014, Proteomics.
[35] Joshua E. Elias,et al. Target-Decoy Search Strategy for Mass Spectrometry-Based Proteomics , 2010, Proteome Bioinformatics.
[36] Cathy H. Wu,et al. The Human Proteome Project: Current State and Future Direction , 2011, Molecular & Cellular Proteomics.
[37] Lennart Martens,et al. Analysis of the resolution limitations of peptide identification algorithms. , 2011, Journal of proteome research.
[38] A. Nesvizhskii,et al. Metrics for the Human Proteome Project 2015: Progress on the Human Proteome and Guidelines for High-Confidence Protein Identification. , 2015, Journal of proteome research.