Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.)

[1]  S. Cannon,et al.  Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications , 2014, PloS one.

[2]  Sumeet Singh,et al.  Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.) , 2013, Theoretical and Applied Genetics.

[3]  Sampa Das,et al.  Fusarium oxysporum f.sp. ciceri Race 1 Induced Redox State Alterations Are Coupled to Downstream Defense Signaling in Root Tissues of Chickpea (Cicer arietinum L.) , 2013, PloS one.

[4]  A. Rathore,et al.  Molecular mapping of QTLs for resistance to Fusarium wilt (race 1) and Ascochyta blight in chickpea (Cicer arietinum L.) , 2013, Euphytica.

[5]  Mukesh Jain,et al.  A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.). , 2013, The Plant journal : for cell and molecular biology.

[6]  James K. Hane,et al.  Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement , 2013, Nature Biotechnology.

[7]  P. Langridge,et al.  Can genomics boost productivity of orphan crops? , 2012, Nature Biotechnology.

[8]  D. Shibata,et al.  Mapping of Micro-Tom BAC-End Sequences to the Reference Tomato Genome Reveals Possible Genome Rearrangements and Polymorphisms , 2012, International journal of plant genomics.

[9]  Gitanjali Yadav,et al.  High-Throughput SNP Discovery and Genotyping for Constructing a Saturated Linkage Map of Chickpea (Cicer arietinum L.) , 2012, DNA research : an international journal for rapid publication of reports on genes and genomes.

[10]  Ashish Kumar,et al.  Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes , 2012, Plant biotechnology journal.

[11]  S. Jackson,et al.  Integration of the Draft Sequence and Physical Map as a Framework for Genomic Research in Soybean (Glycine max (L.) Merr.) and Wild Soybean (Glycine soja Sieb. and Zucc.) , 2012, G3: Genes | Genomes | Genetics.

[12]  R. Gaur,et al.  EST-derived genic molecular markers: development and utilization for generating an advanced transcript map of chickpea , 2012, Theoretical and Applied Genetics.

[13]  Huanming Yang,et al.  Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers , 2011, Nature Biotechnology.

[14]  Mahendar Thudi,et al.  Current state-of-art of sequencing technologies for plant genomics research. , 2012, Briefings in functional genomics.

[15]  R. Varshney,et al.  Assessment of ICCV 2 × JG 62 chickpea progenies shows sensitivity of reproduction to salt stress and reveals QTL for seed yield and yield components , 2012, Molecular Breeding.

[16]  S. Young,et al.  Dynamo maker ready to roll , 2011, Nature.

[17]  G. Kahl,et al.  Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.) , 2011, PloS one.

[18]  Alvaro J. González,et al.  The Medicago Genome Provides Insight into the Evolution of Rhizobial Symbioses , 2011, Nature.

[19]  S. Korban,et al.  Integration of physical and genetic maps in apple confirms whole-genome and segmental duplications in the apple genome , 2011, Journal of experimental botany.

[20]  Mukesh Jain,et al.  Gene Discovery and Tissue-Specific Transcriptome Analysis in Chickpea with Massively Parallel Pyrosequencing and Web Resource Development1[W][OA] , 2011, Plant Physiology.

[21]  W. Yin,et al.  PdERECTA, a leucine-rich repeat receptor-like kinase of poplar, confers enhanced water use efficiency in Arabidopsis , 2011, Planta.

[22]  T. Shah,et al.  Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.) , 2011, Theoretical and Applied Genetics.

[23]  R. Varshney,et al.  Mapping QTL for resistance to botrytis grey mould in chickpea , 2011, Euphytica.

[24]  Rajeev K. Varshney,et al.  Genomic tools and germplasm diversity for chickpea improvement , 2011, Plant Genetic Resources.

[25]  M. Abu-Salem,et al.  Physico-chemical properties of tempeh produced from chickpea seeds , 2011 .

[26]  H. Nguyen,et al.  Trait mapping and molecular breeding , 2011 .

[27]  A. Pratap,et al.  Biology and breeding of food legumes. , 2011 .

[28]  Zhen Su,et al.  Transcriptional profiling of Medicago truncatula under salt stress identified a novel CBF transcription factor MtCBF4 that plays an important role in abiotic stress responses , 2011, BMC Plant Biology.

[29]  D. Shtienberg,et al.  A BAC/BIBAC-based physical map of chickpea, Cicer arietinum L , 2010, BMC Genomics.

[30]  R. Varshney,et al.  Legume Genomics and Breeding , 2010 .

[31]  P. Winter,et al.  A consensus genetic map of chickpea (Cicer arietinum L.) based on 10 mapping populations , 2010, Euphytica.

[32]  Rajeev K. Varshney,et al.  Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome , 2010, Theoretical and Applied Genetics.

[33]  T. Sakurai,et al.  Genome sequence of the palaeopolyploid soybean , 2010, Nature.

[34]  K. Siddique,et al.  Mapping a major gene for growth habit and QTLs for ascochyta blight resistance and flowering time in a population between chickpea and Cicer reticulatum , 2010, Euphytica.

[35]  Christopher D Town,et al.  A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.) , 2009, BMC Genomics.

[36]  Stephen J O'Brien,et al.  Every genome sequence needs a good map. , 2009, Genome research.

[37]  J. Dvorak,et al.  A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat , 2009, BMC Genomics.

[38]  D. Meinke,et al.  Integrating the Genetic and Physical Maps of Arabidopsis thaliana: Identification of Mapped Alleles of Cloned Essential (EMB) Genes , 2009, PloS one.

[39]  A. Paterson,et al.  A physical map of the papaya genome with integrated genetic map and genome sequence , 2009, BMC Genomics.

[40]  T. Warkentin,et al.  Genetic analyses and conservation of QTL for ascochyta blight resistance in chickpea (Cicer arietinum L.) , 2009, Theoretical and Applied Genetics.

[41]  James R. Knight,et al.  De Novo Next Generation Sequencing of Plant Genomes , 2009, Rice.

[42]  H. Mori,et al.  Genome Structure of the Legume, Lotus japonicus , 2008, DNA research : an international journal for rapid publication of reports on genes and genomes.

[43]  R. Varshney,et al.  Isolation and characterization of novel microsatellite markers and their application for diversity assessment in cultivated groundnut (Arachis hypogaea) , 2008, BMC Plant Biology.

[44]  Joshua M. Korn,et al.  Mapping and sequencing of structural variation from eight human genomes , 2008, Nature.

[45]  J. Lupski,et al.  The complete genome of an individual by massively parallel DNA sequencing , 2008, Nature.

[46]  P. Arús,et al.  A framework physical map for peach, a model Rosaceae species , 2008, Tree Genetics & Genomes.

[47]  Gabor T. Marth,et al.  Whole-genome sequencing and variant discovery in C. elegans , 2008, Nature Methods.

[48]  S. Pande,et al.  Mapping and validation of QTLs for resistance to an Indian isolate of Ascochyta blight pathogen in chickpea , 2008, Euphytica.

[49]  Yaqin Ma,et al.  The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences , 2008, Functional & Integrative Genomics.

[50]  J. Gil,et al.  Genetic analysis of seed size, yield and days to flowering in a chickpea recombinant inbred line population derived from a Kabuli × Desi cross , 2007 .

[51]  Steven G. Schroeder,et al.  Physical and Genetic Structure of the Maize Genome Reflects Its Complex Evolutionary History , 2007, PLoS genetics.

[52]  Nicholas H. Putnam,et al.  A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation. , 2007, The Plant journal : for cell and molecular biology.

[53]  E. D. Earle,et al.  Nuclear DNA content of some important plant species , 1991, Plant Molecular Biology Reporter.

[54]  P. Bhatnagar-Mathur,et al.  Chickpea (Cicer arietinum L.). , 2006, Methods in molecular biology.

[55]  Galina Fuks,et al.  Whole-Genome Validation of High-Information-Content Fingerprinting1 , 2005, Plant Physiology.

[56]  G. Farquhar,et al.  The ERECTA gene regulates plant transpiration efficiency in Arabidopsis , 2005, Nature.

[57]  Takuji Sasaki,et al.  The map-based sequence of the rice genome , 2005, Nature.

[58]  C. Scheuring,et al.  Construction of BAC and BIBAC libraries and their applications for generation of SSR markers for genome analysis of chickpea, Cicer arietinum L. , 2005, Theoretical and Applied Genetics.

[59]  H. Kanamori,et al.  End Sequencing and Chromosomal in silico Mapping of BAC Clones Derived from an indica Rice Cultivar, Kasalath , 2004 .

[60]  Nansheng Chen,et al.  Using RepeatMasker to Identify Repetitive Elements in Genomic Sequences , 2009, Current protocols in bioinformatics.

[61]  P. Nimmakayala,et al.  A BAC- and BIBAC-based physical map of the soybean genome. , 2004, Genome research.

[62]  Carolyn Thomas,et al.  High-throughput fingerprinting of bacterial artificial chromosomes using the snapshot labeling kit and sizing of restriction fragments by capillary electrophoresis. , 2003, Genomics.

[63]  J. Bakker,et al.  Genetic and physical mapping of homologues of the virus resistance gene Rx1 and the cyst nematode resistance gene Gpa2 in potato , 2003, Theoretical and Applied Genetics.

[64]  S. Udupa,et al.  Genetic dissection of pathotype-specific resistance to ascochyta blight disease in chickpea (Cicer arietinum L.) using microsatellite markers , 2003, Theoretical and Applied Genetics.

[65]  Q. Tao,et al.  One large-insert plant-transformation-competent BIBAC library and three BAC libraries of Japonica rice for genome research in rice and other grasses , 2002, Theoretical and Applied Genetics.

[66]  F. Muehlbauer,et al.  Integration of sequence tagged microsatellite sites to the chickpea genetic map , 2002, Theoretical and Applied Genetics.

[67]  P. Klein,et al.  A molecular cytogenetic map of sorghum chromosome 1. Fluorescence in situ hybridization analysis with mapped bacterial artificial chromosomes. , 2002, Genetics.

[68]  B. Williams,et al.  An Integrated Physical and Genetic Map of the Rice Genome , 2002, The Plant Cell Online.

[69]  D. Marshall,et al.  Computational and experimental characterization of physically clustered simple sequence repeats in plants. , 2000, Genetics.

[70]  D. Baulcombe,et al.  Homologues of a single resistance-gene cluster in potato confer resistance to distinct pathogens: a virus and a nematode. , 2000, The Plant journal : for cell and molecular biology.

[71]  J E Mullet,et al.  A high-throughput AFLP-based method for constructing integrated genetic and physical maps: progress toward a sorghum genome map. , 2000, Genome research.

[72]  P. Green,et al.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment. , 1998, Genome research.

[73]  P Green,et al.  Base-calling of automated sequencer traces using phred. II. Error probabilities. , 1998, Genome research.

[74]  D. Bentley,et al.  Genome mapping by fluorescent fingerprinting. , 1997, Genome research.

[75]  R. Wilson,et al.  High throughput fingerprint analysis of large-insert clones. , 1997, Genome research.

[76]  K. Singh Chickpea (Cicer arietinum L.) , 1997 .

[77]  B. Birren,et al.  Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector. , 1992, Proceedings of the National Academy of Sciences of the United States of America.