Priming in the Type I-F CRISPR-Cas system triggers strand-independent spacer acquisition, bi-directionally from the primed protospacer
暂无分享,去创建一个
Peter C. Fineran | Rebecca E. McKenzie | R. Staals | P. C. Fineran | Matthew B. McNeil | Raymond H.J. Staals | Corinda Taylor | Corinna Richter | James T. Chang | Raymond H. J. Staals | Corinda Taylor | Ron L. Dy | Bridget N.J. Watson | B. N. Watson | Corinna Richter | J. T. Chang | P. Fineran
[1] Peter C. Fineran,et al. In Vivo Protein Interactions and Complex Formation in the Pectobacterium atrosepticum Subtype I-F CRISPR/Cas System , 2012, PloS one.
[2] Ibtissem Grissa,et al. CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats , 2007, Nucleic Acids Res..
[3] R. Terns,et al. CRISPR-based adaptive immune systems. , 2011, Current opinion in microbiology.
[4] U. Qimron,et al. Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli , 2012, Nucleic acids research.
[5] R. Barrangou,et al. CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes , 2007, Science.
[6] Konstantin Severinov,et al. Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system , 2012, Nature Communications.
[7] A. Fraser,et al. Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[8] Jesús García-Martínez,et al. CRISPR-spacer integration reporter plasmids reveal distinct genuine acquisition specificities among CRISPR-Cas I-E variants of Escherichia coli , 2013, RNA biology.
[9] Philippe Horvath,et al. Phage Response to CRISPR-Encoded Resistance in Streptococcus thermophilus , 2007, Journal of bacteriology.
[10] Jesús García-Martínez,et al. Target Motifs Affecting Natural Immunity by a Constitutive CRISPR-Cas System in Escherichia coli , 2012, PloS one.
[11] Philippe Horvath,et al. Cas3 is a single‐stranded DNA nuclease and ATP‐dependent helicase in the CRISPR/Cas immune system , 2011, The EMBO journal.
[12] R. Garrett,et al. Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms , 2012, Molecular microbiology.
[13] Stan J. J. Brouns,et al. Evolution and classification of the CRISPR–Cas systems , 2011, Nature Reviews Microbiology.
[14] Stan J. J. Brouns,et al. The CRISPRs, they are a-changin': how prokaryotes generate adaptive immunity. , 2012, Annual review of genetics.
[15] J. García-Martínez,et al. Short motif sequences determine the targets of the prokaryotic CRISPR defence system. , 2009, Microbiology.
[16] Scott Bailey,et al. In Vitro Reconstitution of an Escherichia coli RNA-guided Immune System Reveals Unidirectional, ATP-dependent Degradation of DNA Target* , 2013, The Journal of Biological Chemistry.
[17] Chris M. Brown,et al. CRISPRTarget: bioinformatic prediction and analysis of crRNA targets. , 2013, RNA biology.
[18] Stan J. J. Brouns,et al. CRISPR Interference Directs Strand Specific Spacer Acquisition , 2012, PloS one.
[19] 宁北芳,et al. 疟原虫var基因转换速率变化导致抗原变异[英]/Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A , 2005 .
[20] V. Kunin,et al. Evolutionary conservation of sequence and secondary structures in CRISPR repeats , 2007, Genome Biology.
[21] D. Burstein,et al. DNA motifs determining the efficiency of adaptation into the Escherichia coli CRISPR array , 2013, Proceedings of the National Academy of Sciences.
[22] H. Xiang,et al. Haloarcula hispanica CRISPR authenticates PAM of a target sequence to prime discriminative adaptation , 2014, Nucleic acids research.
[23] Peter C. Fineran,et al. Function and Regulation of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) / CRISPR Associated (Cas) Systems , 2012, Viruses.
[24] P. C. Fineran,et al. Chromosomal targeting by CRISPR-Cas systems can contribute to genome plasticity in bacteria , 2013, Mobile genetic elements.
[25] Jos Boekhorst,et al. Degenerate target sites mediate rapid primed CRISPR adaptation , 2014, Proceedings of the National Academy of Sciences.
[26] Sergey A. Shmakov,et al. Pervasive generation of oppositely oriented spacers during CRISPR adaptation , 2014, Nucleic acids research.
[27] Albert J R Heck,et al. RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions , 2011, Proceedings of the National Academy of Sciences.
[28] Rodolphe Barrangou,et al. CRISPR‐Cas systems and RNA‐guided interference , 2013, Wiley interdisciplinary reviews. RNA.
[29] Peter C. Fineran,et al. Cytotoxic Chromosomal Targeting by CRISPR/Cas Systems Can Reshape Bacterial Genomes and Expel or Remodel Pathogenicity Islands , 2013, PLoS genetics.
[30] Emmanuelle Charpentier,et al. Memory of viral infections by CRISPR-Cas adaptive immune systems: acquisition of new information. , 2012, Virology.
[31] Peter C. Fineran,et al. CRISPR–Cas systems: beyond adaptive immunity , 2014, Nature Reviews Microbiology.
[32] Albert J R Heck,et al. Structural basis for CRISPR RNA-guided DNA recognition by Cascade , 2011, Nature Structural &Molecular Biology.
[33] P. C. Fineran,et al. The subtype I-F CRISPR-Cas system influences pathogenicity island retention in Pectobacterium atrosepticum via crRNA generation and Csy complex formation. , 2013, Biochemical Society transactions.
[34] Sarah Neumann,et al. CRISPR-Cas systems preferentially target the leading regions of MOBF conjugative plasmids , 2013, RNA biology.
[35] R. Barrangou,et al. In vitro reconstitution of Cascade‐mediated CRISPR immunity in Streptococcus thermophilus , 2013, The EMBO journal.
[36] Konstantin Severinov,et al. CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3. , 2012, Molecular cell.
[37] H. Xiang,et al. Adaptation of the Haloarcula hispanica CRISPR-Cas system to a purified virus strictly requires a priming process , 2013, Nucleic acids research.
[38] Samuel H Sternberg,et al. CasA mediates Cas3-catalyzed target degradation during CRISPR RNA-guided interference , 2014, Proceedings of the National Academy of Sciences.
[39] Peter C. Fineran,et al. Csy4 is responsible for CRISPR RNA processing in Pectobacterium atrosepticum , 2011, RNA biology.
[40] K. Severinov,et al. High-throughput analysis of type I-E CRISPR/Cas spacer acquisition in E. coli , 2013, RNA Biology.
[41] Rotem Sorek,et al. CRISPR-mediated adaptive immune systems in bacteria and archaea. , 2013, Annual review of biochemistry.
[42] Alan R. Davidson,et al. Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system , 2012, Nature.
[43] Shiraz A. Shah,et al. Protospacer recognition motifs Mixed identities and functional diversity , 2013 .
[44] George A. O'Toole,et al. The CRISPR/Cas Adaptive Immune System of Pseudomonas aeruginosa Mediates Resistance to Naturally Occurring and Engineered Phages , 2012, Journal of bacteriology.