Proposed minimal standards for describing new taxa of aerobic, endospore-forming bacteria.

Minimal standards for describing new taxa within the aerobic endospore-forming bacteria are proposed, following Recommendation 30b of the Bacteriological Code (1990 Revision). These minimal standards are recommended as guidelines to assist authors in the preparation of descriptions for novel taxa. They encourage broad polyphasic characterization and the construction of descriptions that are practically useful in routine diagnostic laboratories. The proposals have been endorsed by the Subcommittee on the Taxonomy of the Genus Bacillus and Related Organisms of the International Committee on Systematics of Prokaryotes.

[1]  K. Schleifer,et al.  The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains. , 2008, Systematic and applied microbiology.

[2]  B. Tindall Confirmation of deposit, but confirmation of what? , 2008, International journal of systematic and evolutionary microbiology.

[3]  G. Garrity,et al.  Proposals to clarify how type strains are deposited and made available to the scientific community for the purpose of systematic research. , 2008, International journal of systematic and evolutionary microbiology.

[4]  J. Siefert,et al.  Bacillus coahuilensis sp. nov., a moderately halophilic species from a desiccation lagoon in the Cuatro Ciénegas Valley in Coahuila, Mexico. , 2008, International journal of systematic and evolutionary microbiology.

[5]  Bernard De Baets,et al.  TaxonGap: a visualization tool for intra- and inter-species variation among individual biomarkers , 2008, Bioinform..

[6]  J. Chun,et al.  EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. , 2007, International journal of systematic and evolutionary microbiology.

[7]  H. Kasai,et al.  Comparison of gyrB gene sequences, 16S rRNA gene sequences and DNA-DNA hybridization in the Bacillus subtilis group. , 2007, International journal of systematic and evolutionary microbiology.

[8]  A. Yokota,et al.  Reclassification of Bacillus axarquiensis Ruiz-Garcia et al. 2005 and Bacillus malacitensis Ruiz-Garcia et al. 2005 as later heterotypic synonyms of Bacillus mojavensis Roberts et al. 1994. , 2007, International journal of systematic and evolutionary microbiology.

[9]  Brian J Tindall,et al.  Valid publication of names of prokaryotes according to the rules of nomenclature: past history and current practice. , 2006, International journal of systematic and evolutionary microbiology.

[10]  A. Kolstø,et al.  The Bacillus cereus group: novel aspects of population structure and genome dynamics , 2006, Journal of applied microbiology.

[11]  P. de Vos,et al.  Cultivation of Denitrifying Bacteria: Optimization of Isolation Conditions and Diversity Study , 2006, Applied and Environmental Microbiology.

[12]  S. Ehrlich,et al.  Multiple-Locus Sequence Typing Analysis of Bacillus cereus and Bacillus thuringiensis Reveals Separate Clustering and a Distinct Population Structure of Psychrotrophic Strains , 2006, Applied and Environmental Microbiology.

[13]  L. Seldin,et al.  Assessment of the diversity of Paenibacillus species in environmental samples by a novel rpoB-based PCR-DGGE method. , 2005, FEMS microbiology ecology.

[14]  D. R. Zeigler Application of a recN sequence similarity analysis to the identification of species within the bacterial genus Geobacillus. , 2005, International journal of systematic and evolutionary microbiology.

[15]  E. Holmes,et al.  Population Structure and Evolution of the Bacillus cereus Group , 2004, Journal of bacteriology.

[16]  J. Côté,et al.  Phylogenetic relationships between Bacillus species and related genera inferred from comparison of 3' end 16S rDNA and 5' end 16S-23S ITS nucleotide sequences. , 2003, International journal of systematic and evolutionary microbiology.

[17]  W. Whitman,et al.  Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. , 2002, International journal of systematic and evolutionary microbiology.

[18]  P. Vos,et al.  Judicial Commission of the International Committee on Systematic Bacteriology; IXth International (IUMS) Congress of Bacteriology and Applied Microbiology , 2000 .

[19]  J. Wiegel,et al.  Differentiation between spore-forming and asporogenic bacteria using a PCR and Southern hybridization based method , 1997 .

[20]  C. Carlson,et al.  Variable numbers of rRNA gene operons in Bacillus cereus strains. , 1996, FEMS microbiology letters.

[21]  Erko Stackebrandt,et al.  Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology , 1994 .

[22]  V. Azevedo,et al.  Physical mapping of stable RNA genes in Bacillus subtilis using polymerase chain reaction amplification from a yeast artificial chromosome library , 1993, Journal of bacteriology.

[23]  Lawrence G. Wayne,et al.  International Committee on Systematic Bacteriology: Announcement of the Report of the Ad Hoc Committee on Reconciliation of Approaches to Bacterial Systematics , 1988 .

[24]  E. Asheshov,et al.  International Committee on Systematic Bacteriology: Subcommittee on the Phage-Typing of Staphylococci , 1975 .

[25]  P. Vandamme,et al.  DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. , 2007, International journal of systematic and evolutionary microbiology.

[26]  Wilhelm Frederiksen,et al.  Rejection of Clostridium putrificum and conservation of Clostridium botulinum and Clostridium sporogenes-Opinion 69. Judicial Commission of the International Committee on Systematic Bacteriology. , 1999, International journal of systematic bacteriology.

[27]  Pha Sneath,et al.  International code of nomenclature of bacteria (1990 revision). , 1992 .