Cyanobacterial Light-Driven Proton Pump, Gloeobacter Rhodopsin: Complementarity between Rhodopsin-Based Energy Production and Photosynthesis

A homologue of type I rhodopsin was found in the unicellular Gloeobacter violaceus PCC7421, which is believed to be primitive because of the lack of thylakoids and peculiar morphology of phycobilisomes. The Gloeobacter rhodopsin (GR) gene encodes a polypeptide of 298 amino acids. This gene is localized alone in the genome unlike cyanobacterium Anabaena opsin, which is clustered together with 14 kDa transducer gene. Amino acid sequence comparison of GR with other type I rhodopsin shows several conserved residues important for retinal binding and H+ pumping. In this study, the gene was expressed in Escherichia coli and bound all-trans retinal to form a pigment (λmax  = 544 nm at pH 7). The pKa of proton acceptor (Asp121) for the Schiff base, is approximately 5.9, so GR can translocate H+ under physiological conditions (pH 7.4). In order to prove the functional activity in the cell, pumping activity was measured in the sphaeroplast membranes of E. coli and one of Gloeobacter whole cell. The efficient proton pumping and rapid photocycle of GR strongly suggests that Gloeobacter rhodopsin functions as a proton pumping in its natural environment, probably compensating the shortage of energy generated by chlorophyll-based photosynthesis without thylakoids.

[1]  Spectroscopic and photochemical analysis of proteorhodopsin variants from the surface of the Arctic Ocean , 2008, FEBS letters.

[2]  E. Delong,et al.  Proteorhodopsin photosystem gene clusters exhibit co-evolutionary trends and shared ancestry among diverse marine microbial phyla. , 2007, Environmental microbiology.

[3]  J. Spudich The multitalented microbial sensory rhodopsins. , 2006, Trends in microbiology.

[4]  D. Natvig,et al.  The nop-1 gene of Neurospora crassa encodes a seven transmembrane helix retinal-binding protein homologous to archaeal rhodopsins. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[5]  K. Jung The Distinct Signaling Mechanisms of Microbial Sensory Rhodopsins in Archaea, Eubacteria and Eukarya † , 2007, Photochemistry and photobiology.

[6]  R. Wachter,et al.  Phylogenetic relationships of nonaxenic filamentous cyanobacterial strains based on 16S rRNA sequence analysis , 1996, Journal of Molecular Evolution.

[7]  Thomas Friedrich,et al.  Proteorhodopsin is a light-driven proton pump with variable vectoriality. , 2002, Journal of molecular biology.

[8]  Andrei K. Dioumaev,et al.  Proton transfers in the photochemical reaction cycle of proteorhodopsin. , 2002, Biochemistry.

[9]  J. Lanyi,et al.  Reconstitution of Gloeobacter violaceus rhodopsin with a light-harvesting carotenoid antenna. , 2009, Biochemistry.

[10]  P. Hegemann,et al.  Gloeobacter rhodopsin, limitation of proton pumping at high electrochemical load. , 2013, Biophysical journal.

[11]  L. Brown,et al.  The photocycle and proton translocation pathway in a cyanobacterial ion-pumping rhodopsin. , 2009, Biophysical journal.

[12]  J. Spudich,et al.  Microbial Rhodopsins: Phylogenetic and Functional Diversity , 2005 .

[13]  J. Antón,et al.  Xanthorhodopsin: A Proton Pump with a Light-Harvesting Carotenoid Antenna , 2005, Science.

[14]  György Váró,et al.  Characterization of the photochemical reaction cycle of proteorhodopsin. , 2003, Biophysical journal.

[15]  J. Spudich,et al.  Retinylidene proteins: structures and functions from archaea to humans. , 2000, Annual review of cell and developmental biology.

[16]  K. Shimada,et al.  Structural and Spectroscopic Properties of a Reaction Center Complex from the Chlorosome-Lacking Filamentous Anoxygenic Phototrophic Bacterium Roseiflexus castenholzii , 2005, Journal of bacteriology.

[17]  J. Sugiyama,et al.  Detection of Seven Major Evolutionary Lineages in Cyanobacteria Based on the 16S rRNA Gene Sequence Analysis with New Sequences of Five Marine Synechococcus Strains , 1999, Journal of Molecular Evolution.

[18]  K. Jung,et al.  Low-temperature FTIR study of Gloeobacter rhodopsin: presence of strongly hydrogen-bonded water and long-range structural protein perturbation upon retinal photoisomerization. , 2010, Biochemistry.

[19]  Peter Hegemann,et al.  Algal sensory photoreceptors. , 2008, Annual review of plant biology.

[20]  R. Wachter,et al.  An early origin of plastids within the cyanobacterial divergence is suggested by evolutionary trees based on complete 16S rRNA sequences. , 1995, Molecular biology and evolution.

[21]  J. Spudich,et al.  Photochromicity of Anabaena Sensory Rhodopsin, an Atypical Microbial Receptor with a cis-Retinal Light-adapted Form* , 2005, Journal of Biological Chemistry.

[22]  M. Mimuro,et al.  Complete genome structure of Gloeobacter violaceus PCC 7421, a cyanobacterium that lacks thylakoids. , 2003, DNA research : an international journal for rapid publication of reports on genes and genomes.

[23]  D. Oesterhelt,et al.  Chromophore equilibria in bacteriorhodopsin. , 1979, Biophysical journal.

[24]  J. von Lintig,et al.  Filling the Gap in Vitamin A Research , 2000, The Journal of Biological Chemistry.

[25]  R. Lozier,et al.  Flash spectroscopy of purple membrane. , 1987, Biophysical journal.

[26]  I. Yamazaki,et al.  Unique fluorescence properties of a cyanobacterium Gloeobacter violaceus PCC 7421: reasons for absence of the long-wavelength PSI Chl a fluorescence at -196 degrees C. , 2002, Plant & cell physiology.

[27]  Marion Leclerc,et al.  Proteorhodopsin phototrophy in the ocean , 2001, Nature.

[28]  B. Hess,et al.  Spectrally silent transitions in the bacteriorhodopsin photocycle. , 1996, Biophysical journal.

[29]  W. Stoeckenius,et al.  Light-regulated retinal-dependent reversible phosphorylation of Halobacterium proteins. , 1980, The Journal of biological chemistry.

[30]  S. Ho,et al.  Site-directed mutagenesis by overlap extension using the polymerase chain reaction. , 1989, Gene.

[31]  V. D. Samuilov,et al.  Hydrogen Peroxide Inhibits Photosynthetic Electron Transport in Cells of Cyanobacteria , 2001, Biochemistry (Moscow).

[32]  R. Birge,et al.  Nature of the primary photochemical events in rhodopsin and bacteriorhodopsin. , 1990, Biochimica et biophysica acta.

[33]  P. Ormos,et al.  Chloride ion binding to bacteriorhodopsin at low pH: an infrared spectroscopic study. , 1999, Biophysical journal.

[34]  J. Spudich,et al.  Spectroscopic and Photochemical Characterization of a Deep Ocean Proteorhodopsin* , 2003, Journal of Biological Chemistry.

[35]  S. Waschuk,et al.  Screening and characterization of proteorhodopsin color-tuning mutations in Escherichia coli with endogenous retinal synthesis. , 2008, Biochimica et biophysica acta.

[36]  J. Waterbury,et al.  A cyanobacterium which lacks thylakoids , 2004, Archives of Microbiology.

[37]  M. Schmidt,et al.  Gloeobacter violaceus— investigation of an unusual photosynthetic apparatus. Absence of the long wavelength emission of photosystem I in 77 K fluorescence spectra , 1995 .

[38]  L. Brown,et al.  Cytoplasmic shuttling of protons in anabaena sensory rhodopsin: implications for signaling mechanism. , 2006, Journal of molecular biology.

[39]  M. Sheves,et al.  Synthetic retinals as probes for the binding site and photoreactions in rhodopsins , 1989, The Journal of Membrane Biology.

[40]  W. Stoeckenius,et al.  Effect of acid pH on the absorption spectra and photoreactions of bacteriorhodopsin. , 1979, Biochemistry.

[41]  D. Oesterhelt,et al.  Rhodopsin-like protein from the purple membrane of Halobacterium halobium. , 1971, Nature: New biology.

[42]  D. Bryant,et al.  The structure of Gloeobacter violaceus and its phycobilisomes , 1981, Archives of Microbiology.

[43]  J. Lanyi,et al.  Reconstitution of gloeobacter rhodopsin with echinenone: role of the 4-keto group. , 2010, Biochemistry.

[44]  B. Schobert,et al.  Crystallographic structure of xanthorhodopsin, the light-driven proton pump with a dual chromophore , 2008, Proceedings of the National Academy of Sciences.

[45]  J. Spudich,et al.  Demonstration of a sensory rhodopsin in eubacteria , 2003, Molecular microbiology.

[46]  Oleg A. Sineshchekov,et al.  Two rhodopsins mediate phototaxis to low- and high-intensity light in Chlamydomonas reinhardtii , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[47]  A. Glazer,et al.  Characterization of the biliproteins of Gloeobacter violaceus chromophore content of a cyanobacterial phycoerythrin carrying phycourobilin chromophore , 1981, Archives of Microbiology.

[48]  E. Koonin,et al.  Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. , 2000, Science.

[49]  J. Spudich,et al.  Microbial rhodopsins: functional versatility and genetic mobility. , 2006, Trends in microbiology.

[50]  Krzysztof Palczewski,et al.  Visual Rhodopsin Sees the Light: Structure and Mechanism of G Protein Signaling* , 2007, Journal of Biological Chemistry.