The genome of the largest bony fish, ocean sunfish (Mola mola), provides insights into its fast growth rate
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S. Brenner | Huanming Yang | Jian Wang | B. Venkatesh | B. Tay | Guojie Zhang | Alison P. Lee | V. Ravi | Cai Li | Hailin Pan | M. M. Lian | Hao Yu | Guojie Zhang
[1] S. Koren,et al. The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts , 2016, Nature Communications.
[2] Bronwen L. Aken,et al. The spotted gar genome illuminates vertebrate evolution and facilitates human-to-teleost comparisons , 2016, Nature Genetics.
[3] Evgeny M. Zdobnov,et al. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs , 2015, Bioinform..
[4] O. Kohany,et al. Repbase Update, a database of repetitive elements in eukaryotic genomes , 2015, Mobile DNA.
[5] H. Ellegren,et al. Temporal Dynamics of Avian Populations during Pleistocene Revealed by Whole-Genome Sequences , 2015, Current Biology.
[6] G. Ortí,et al. An evaluation of fossil tip-dating versus node-age calibrations in tetraodontiform fishes (Teleostei: Percomorphaceae). , 2015, Molecular phylogenetics and evolution.
[7] Ying Sun,et al. Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes , 2014, Nature Communications.
[8] Ting Wang,et al. The draft genome of the large yellow croaker reveals well-developed innate immunity , 2014, Nature Communications.
[9] Marco Biasini,et al. SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information , 2014, Nucleic Acids Res..
[10] N. Longo,et al. Sequencing analysis of insulin receptor defects and detection of two novel mutations in INSR gene☆ , 2014, Molecular genetics and metabolism reports.
[11] Alexandros Stamatakis,et al. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies , 2014, Bioinform..
[12] Brian J. Raney,et al. Elephant shark genome provides unique insights into gnathostome evolution , 2014, Nature.
[13] Fabian Sievers,et al. Clustal Omega, accurate alignment of very large numbers of sequences. , 2014, Methods in molecular biology.
[14] Ari Löytynoja,et al. Phylogeny-aware alignment with PRANK. , 2014, Methods in molecular biology.
[15] D. Mortlock,et al. Hox11 genes are required for regional patterning and integration of muscle, tendon and bone , 2013, Development.
[16] B. Björnsson,et al. Regulation of skeletal muscle growth in fish by the growth hormone--insulin-like growth factor system. , 2013, General and comparative endocrinology.
[17] Jianying Yuan,et al. Estimation of genomic characteristics by analyzing k-mer frequency in de novo genome projects , 2013, 1308.2012.
[18] P. Wainwright,et al. Phylogeny and tempo of diversification in the superradiation of spiny-rayed fishes , 2013, Proceedings of the National Academy of Sciences.
[19] Laurent Gil,et al. Ensembl 2013 , 2012, Nucleic Acids Res..
[20] Jian Wang,et al. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler , 2012, GigaScience.
[21] Huanming Yang,et al. Single-cell sequencing analysis characterizes common and cell-lineage-specific mutations in a muscle-invasive bladder cancer , 2012, GigaScience.
[22] S. Anker,et al. Growth hormone, insulin-like growth factor 1, and insulin signaling—a pharmacological target in body wasting and cachexia , 2011, Journal of cachexia, sarcopenia and muscle.
[23] R. Durbin,et al. Inference of human population history from individual whole-genome sequences. , 2011, Nature.
[24] Syed Haider,et al. Ensembl BioMarts: a hub for data retrieval across taxonomic space , 2011, Database J. Biol. Databases Curation.
[25] Christine Ortiz,et al. Nanomechanics of the Cartilage Extracellular Matrix. , 2011, Annual review of materials research.
[26] K. Kawasaki. The SCPP Gene Family and the Complexity of Hard Tissues in Vertebrates , 2011, Cells Tissues Organs.
[27] M. S. Barash. Environmental changes in the neogene and the biotic response , 2011 .
[28] Jianzhi Zhang,et al. Pseudogenization of the umami taste receptor gene Tas1r1 in the giant panda coincided with its dietary switch to bamboo. , 2010, Molecular biology and evolution.
[29] M. Waters,et al. The growth hormone receptor: mechanism of activation and clinical implications , 2010, Nature Reviews Endocrinology.
[30] M. DePristo,et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.
[31] Tal Pupko,et al. GUIDANCE: a web server for assessing alignment confidence scores , 2010, Nucleic Acids Res..
[32] R. Krumlauf,et al. Hox genes and segmentation of the hindbrain and axial skeleton. , 2009, Annual review of cell and developmental biology.
[33] Richard Durbin,et al. Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .
[34] György Abrusán,et al. TEclass - a tool for automated classification of unknown eukaryotic transposable elements , 2009, Bioinform..
[35] K. Kawasaki. The SCPP gene repertoire in bony vertebrates and graded differences in mineralized tissues , 2009, Development Genes and Evolution.
[36] G. Hays,et al. The biology and ecology of the ocean sunfish Mola mola: a review of current knowledge and future research perspectives , 2009, Reviews in Fish Biology and Fisheries.
[37] Katsufumi Sato,et al. Functional Dorsoventral Symmetry in Relation to Lift-Based Swimming in the Ocean Sunfish Mola mola , 2008, PloS one.
[38] T. Nakatsubo,et al. Growth of Captive Ocean Sunfish, Mola mola , 2007 .
[39] Axel Meyer,et al. Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni , 2007, BMC Genomics.
[40] B. Hayward,et al. Last global extinction in the deep sea during the mid-Pleistocene climate transition , 2007 .
[41] Wei-Min Huang,et al. Bone growth in zebrafish fins occurs via multiple pulses of cell proliferation , 2007, Developmental dynamics : an official publication of the American Association of Anatomists.
[42] Denis Duboule,et al. The role of Hox genes during vertebrate limb development. , 2007, Current opinion in genetics & development.
[43] Keith Bradnam,et al. CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes , 2007, Bioinform..
[44] M. Benton,et al. Paleontological evidence to date the tree of life. , 2006, Molecular biology and evolution.
[45] Robert S. Harris,et al. Improved pairwise alignment of genomic dna , 2007 .
[46] G. Weinstock,et al. Creating a honey bee consensus gene set , 2007, Genome Biology.
[47] M. Nakae,et al. Peripheral nervous system of the ocean sunfish Mola mola (Tetraodontiformes: Molidae) , 2006, Ichthyological Research.
[48] R. Tuan,et al. Technology Insight: adult stem cells in cartilage regeneration and tissue engineering , 2006, Nature Clinical Practice Rheumatology.
[49] Peer Bork,et al. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments , 2006, Nucleic Acids Res..
[50] Tao Liu,et al. TreeFam: a curated database of phylogenetic trees of animal gene families , 2005, Nucleic Acids Res..
[51] Ziheng Yang,et al. Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds. , 2006, Molecular biology and evolution.
[52] Thomas J Naughton,et al. Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified , 2006, BMC Evolutionary Biology.
[53] A. Amores,et al. Developmental genetic basis for the evolution of pelvic fin loss in the pufferfish Takifugu rubripes. , 2005, Developmental biology.
[54] H. Bern,et al. Insulin-like growth factor signaling in fish. , 2005, International review of cytology.
[55] Nansheng Chen,et al. Using RepeatMasker to Identify Repetitive Elements in Genomic Sequences , 2009, Current protocols in bioinformatics.
[56] C. Lautier,et al. IGF-I receptor mutations resulting in intrauterine and postnatal growth retardation. , 2003, The New England journal of medicine.
[57] Mario Stanke,et al. Gene prediction with a hidden Markov model and a new intron submodel , 2003, ECCB.
[58] Stephen L. Johnson,et al. Saltatory control of isometric growth in the zebrafish caudal fin is disrupted in long fin and rapunzel mutants. , 2003, Developmental biology.
[59] B. Hayward. LATE PLIOCENE TO MIDDLE PLEISTOCENE EXTINCTIONS OF DEEP-SEA BENTHIC FORAMINIFERA (“STILOSTOMELLA EXTINCTION”) IN THE SOUTHWEST PACIFIC , 2002 .
[60] W. J. Kent,et al. BLAT--the BLAST-like alignment tool. , 2002, Genome research.
[61] Christian E. V. Storm,et al. Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. , 2001, Journal of molecular biology.
[62] T. Mommsen. Paradigms of growth in fish. , 2001, Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology.
[63] D. Powell. A Fascination for Fish: Adventures of an Underwater Pioneer , 2001 .
[64] S. Velleman. The role of the extracellular matrix in skeletal development. , 2000, Poultry science.
[65] Wei Qian,et al. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. , 2000, Molecular biology and evolution.
[66] G. Benson,et al. Tandem repeats finder: a program to analyze DNA sequences. , 1999, Nucleic acids research.
[67] N. Mckern,et al. Crystal structure of the first three domains of the type-1 insulin-like growth factor receptor , 1998, Nature.
[68] C. Ohlsson,et al. Growth hormone and bone. , 1998, Endocrine reviews.
[69] Ziheng Yang,et al. PAML: a program package for phylogenetic analysis by maximum likelihood , 1997, Comput. Appl. Biosci..
[70] Makoto Sato,et al. Targeted Disruption of Cbfa1 Results in a Complete Lack of Bone Formation owing to Maturational Arrest of Osteoblasts , 1997, Cell.
[71] P Chambon,et al. Hoxa-13 and Hoxd-13 play a crucial role in the patterning of the limb autopod. , 1996, Development.
[72] V. Radha,et al. Association of Lyn tyrosine kinase with the nuclear matrix and cell-cycle-dependent changes in matrix-associated tyrosine kinase activity. , 1996, European journal of biochemistry.
[73] T. Clackson,et al. A hot spot of binding energy in a hormone-receptor interface , 1995, Science.
[74] J. T. Thomas,et al. Cartilage collagens: strategies for the study of their organisation and expression in the extracellular matrix. , 1994, Annals of the rheumatic diseases.
[75] P. Pilch,et al. The insulin receptor: structure, function, and signaling. , 1994, The American journal of physiology.
[76] B. Shilo,et al. Interallelic complementation among DER/flb alleles: implications for the mechanism of signal transduction by receptor-tyrosine kinases. , 1991, Genetics.
[77] J. Wells,et al. A systematic mutational analysis of hormone-binding determinants in the human growth hormone receptor. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[78] A. Fraser‐Brunner. The Ocean Sunfishes (Family Molidae) , 1952 .