Rotamer libraries of spin labelled cysteines for protein studies.
暂无分享,去创建一个
[1] T. Prisner,et al. Long-range distance determinations in biomacromolecules by EPR spectroscopy , 2007, Quarterly Reviews of Biophysics.
[2] Duilio Cascio,et al. Structural determinants of nitroxide motion in spin‐labeled proteins: Tertiary contact and solvent‐inaccessible sites in helix G of T4 lysozyme , 2007, Protein science : a publication of the Protein Society.
[3] G. Jeschke,et al. Site-Specific Information on Membrane Protein Folding by Electron Spin Echo Envelope Modulation Spectroscopy , 2010 .
[4] K. Khairy,et al. Calculating slow-motional electron paramagnetic resonance spectra from molecular dynamics using a diffusion operator approach. , 2006, The journal of physical chemistry. A.
[5] S. Eaton,et al. DEER distance measurement between a spin label and a native FAD semiquinone in electron transfer flavoprotein. , 2009, Journal of the American Chemical Society.
[6] E. Padan,et al. β-Sheet-dependent Dimerization Is Essential for the Stability of NhaA Na+/H+ Antiporter* , 2009, Journal of Biological Chemistry.
[7] Jack H Freed,et al. Protein structure determination using long-distance constraints from double-quantum coherence ESR: study of T4 lysozyme. , 2002, Journal of the American Chemical Society.
[8] H. Zimmermann,et al. DeerAnalysis2006—a comprehensive software package for analyzing pulsed ELDOR data , 2006 .
[9] G. G. Stokes. "J." , 1890, The New Yale Book of Quotations.
[10] Hartmut Michel,et al. Structure of a Na+/H+ antiporter and insights into mechanism of action and regulation by pH , 2005, Nature.
[11] S. A. Marshall,et al. Energy functions for protein design. , 1999, Current opinion in structural biology.
[12] H. Zimmermann,et al. Flexibility of shape-persistent molecular building blocks composed of p-phenylene and ethynylene units. , 2010, Journal of the American Chemical Society.
[13] D. Cafiso,et al. Substrate-dependent transmembrane signaling in TonB-dependent transporters is not conserved , 2007, Proceedings of the National Academy of Sciences.
[14] Heinz-Jürgen Steinhoff,et al. A structure-based simulation approach for electron paramagnetic resonance spectra using molecular and stochastic dynamics simulations. , 2006, Biophysical journal.
[15] W. Doster. The protein-solvent glass transition. , 2010, Biochimica et biophysica acta.
[16] A Joshua Wand,et al. Improved side‐chain prediction accuracy using an ab initio potential energy function and a very large rotamer library , 2004, Protein science : a publication of the Protein Society.
[17] C. Simmerling,et al. Solution structure of HIV-1 protease flaps probed by comparison of molecular dynamics simulation ensembles and EPR experiments. , 2008, Journal of the American Chemical Society.
[18] Eduardo Perozo,et al. Three-dimensional architecture and gating mechanism of a K+ channel studied by EPR spectroscopy , 1998, Nature Structural Biology.
[19] Benoît Roux,et al. Parametrization, molecular dynamics simulation, and calculation of electron spin resonance spectra of a nitroxide spin label on a polyalanine alpha-helix. , 2008, The journal of physical chemistry. B.
[20] G. Jeschke,et al. Distance measurements on spin-labelled biomacromolecules by pulsed electron paramagnetic resonance. , 2007, Physical chemistry chemical physics : PCCP.
[21] Duilio Cascio,et al. Structural determinants of nitroxide motion in spin‐labeled proteins: Solvent‐exposed sites in helix B of T4 lysozyme , 2008, Protein science : a publication of the Protein Society.
[22] Jack H. Freed,et al. SLOW MOTIONAL ESR IN COMPLEX FLUIDS : THE SLOWLY RELAXING LOCAL STRUCTURE MODEL OF SOLVENT CAGE EFFECTS , 1995 .
[23] P. Fajer,et al. Mapping electron paramagnetic resonance spin label conformations by the simulated scaling method. , 2007, Journal of the American Chemical Society.
[24] W. Kühlbrandt,et al. Conformations of NhaA, the Na/H exchanger from Escherichia coli, in the pH-activated and ion-translocating states. , 2009, Journal of molecular biology.
[25] P. Fajer,et al. Explicit treatment of spin labels in modeling of distance constraints from dipolar EPR and DEER. , 2005, Journal of the American Chemical Society.
[26] Michael W Deem,et al. Parallel tempering: theory, applications, and new perspectives. , 2005, Physical chemistry chemical physics : PCCP.
[27] C. Altenbach,et al. High-resolution distance mapping in rhodopsin reveals the pattern of helix movement due to activation , 2008, Proceedings of the National Academy of Sciences.
[28] Miss A.O. Penney. (b) , 1974, The New Yale Book of Quotations.
[29] J. Ponder,et al. Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes. , 1987, Journal of molecular biology.
[30] P. Horanyi,et al. Conformational exchange in a membrane transport protein is altered in protein crystals. , 2010, Biophysical journal.
[31] H. Khorana,et al. Structural studies on transmembrane proteins. 2. Spin labeling of bacteriorhodopsin mutants at unique cysteines. , 1989, Biochemistry.
[32] Gunnar Jeschke,et al. Direct conversion of EPR dipolar time evolution data to distance distributions. , 2002, Journal of magnetic resonance.
[33] J. Freed,et al. Multifrequency electron spin resonance spectra of a spin-labeled protein calculated from molecular dynamics simulations. , 2009, Journal of the American Chemical Society.
[34] J. Ponder,et al. An efficient newton‐like method for molecular mechanics energy minimization of large molecules , 1987 .
[35] Jane R. Allison,et al. A method to explore protein side chain conformational variability using experimental data. , 2009, Chemphyschem : a European journal of chemical physics and physical chemistry.
[36] K. J. Oh,et al. Crystal structures of spin labeled T4 lysozyme mutants: implications for the interpretation of EPR spectra in terms of structure. , 2000, Biochemistry.
[37] Terry P Lybrand,et al. Simulation of nitroxide electron paramagnetic resonance spectra from brownian trajectories and molecular dynamics simulations. , 2008, Biophysical journal.
[38] Johann P. Klare,et al. Spin labeling EPR , 2009, Photosynthesis Research.
[39] Roland L. Dunbrack,et al. Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool. , 1997, Journal of molecular biology.
[40] H. Steinhoff,et al. A comparative electron paramagnetic resonance study of the nucleotide-binding domains' catalytic cycle in the assembled maltose ATP-binding cassette importer. , 2008, Biophysical journal.
[41] J. Freed,et al. Structure of the ternary complex formed by a chemotaxis receptor signaling domain, the CheA histidine kinase, and the coupling protein CheW as determined by pulsed dipolar ESR spectroscopy. , 2010, Biochemistry.
[42] G. Jeschke,et al. Backbone structure of transmembrane domain IX of the Na+/proline transporter PutP of Escherichia coli. , 2009, Biophysical journal.
[43] W. C. Still,et al. Semianalytical treatment of solvation for molecular mechanics and dynamics , 1990 .
[44] E. Padan,et al. High-resolution structure of a Na+/H+ antiporter dimer obtained by pulsed electron paramagnetic resonance distance measurements. , 2007, Biophysical journal.
[45] W. Kühlbrandt,et al. Crystallisation, structure and function of plant light-harvesting Complex II. , 2009, Biochimica et biophysica acta.
[46] Jack H. Freed,et al. Membrane-bound alpha-synuclein forms an extended helix: long-distance pulsed ESR measurements using vesicles, bicelles, and rodlike micelles. , 2008, Journal of the American Chemical Society.
[47] Duilio Cascio,et al. Structural origin of weakly ordered nitroxide motion in spin‐labeled proteins , 2009, Protein science : a publication of the Protein Society.
[48] Andrew G. Glen,et al. APPL , 2001 .