The PeptideAtlas Project

[1]  Nichole L. King,et al.  Targeted Quantitative Analysis of Streptococcus pyogenes Virulence Factors by Multiple Reaction Monitoring*S , 2008, Molecular & Cellular Proteomics.

[2]  Kenia Whitehead,et al.  Halobacterium salinarum NRC-1 PeptideAtlas: toward strategies for targeted proteomics and improved proteome coverage. , 2008, Journal of proteome research.

[3]  Ruedi Aebersold,et al.  A mouse plasma peptide atlas as a resource for disease proteomics , 2008, Genome Biology.

[4]  Henry H. N. Lam,et al.  PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows , 2008, EMBO reports.

[5]  Alexandra Poulovassilis,et al.  ISPIDER Central: an integrated database web-server for proteomics , 2008, Nucleic Acids Res..

[6]  Nichole L. King,et al.  Development and validation of a spectral library searching method for peptide identification from MS/MS , 2007, Proteomics.

[7]  R. Guigó,et al.  Improving gene annotation using peptide mass spectrometry. , 2007, Genome research.

[8]  Andreas Prlic,et al.  Ensembl 2007 , 2006, Nucleic Acids Res..

[9]  Alexey I Nesvizhskii,et al.  Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas , 2006, Genome Biology.

[10]  James P. Reilly,et al.  A computational approach toward label-free protein quantification using predicted peptide detectability , 2006, ISMB.

[11]  Eric W. Deutsch,et al.  SBEAMS-Microarray: database software supporting genomic expression analyses for systems biology , 2006, BMC Bioinformatics.

[12]  R. Aebersold,et al.  Dynamic Spectrum Quality Assessment and Iterative Computational Analysis of Shotgun Proteomic Data , 2006, Molecular & Cellular Proteomics.

[13]  Hujun Yin,et al.  PepSeeker: a database of proteome peptide identifications for investigating fragmentation patterns , 2005, Nucleic Acids Res..

[14]  Eric W. Deutsch,et al.  The PeptideAtlas project , 2005, Nucleic Acids Res..

[15]  Lennart Martens,et al.  PRIDE: The proteomics identifications database , 2005, Proteomics.

[16]  Nichole L. King,et al.  Human Plasma PeptideAtlas , 2005, Proteomics.

[17]  R. Aebersold,et al.  Scoring proteomes with proteotypic peptide probes , 2005, Nature Reviews Molecular Cell Biology.

[18]  Nichole L. King,et al.  Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry , 2004, Genome Biology.

[19]  Robertson Craig,et al.  Open source system for analyzing, validating, and storing protein identification data. , 2004, Journal of proteome research.

[20]  Robertson Craig,et al.  TANDEM: matching proteins with tandem mass spectra. , 2004, Bioinformatics.

[21]  Rong Wang,et al.  The need for a public proteomics repository , 2004, Nature Biotechnology.

[22]  P. Shannon,et al.  Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.

[23]  R. Aebersold,et al.  A statistical model for identifying proteins by tandem mass spectrometry. , 2003, Analytical chemistry.

[24]  Alexey I Nesvizhskii,et al.  Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. , 2002, Analytical chemistry.

[25]  J. Yates,et al.  An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database , 1994, Journal of the American Society for Mass Spectrometry.

[26]  Daniel B. Martin,et al.  Computational prediction of proteotypic peptides for quantitative proteomics , 2007, Nature Biotechnology.