Multivariate Networks: Visualization and Interaction Techniques

As more and more data is created each day, researchers from different science domains are trying to make sense of it. A lot of this data, for example our connections to friends on different social ...

[1]  Katherine St. John,et al.  Untangling Tanglegrams: Comparing Trees by Their Drawings , 2009, ISBRA.

[2]  J. Stasko,et al.  Focus+context display and navigation techniques for enhancing radial, space-filling hierarchy visualizations , 2000, IEEE Symposium on Information Visualization 2000. INFOVIS 2000. Proceedings.

[3]  Daniel A. Keim,et al.  CircleView: a new approach for visualizing time-related multidimensional data sets , 2004, AVI.

[4]  Roberto Therón,et al.  Treevolution: visual analysis of phylogenetic trees , 2009, Bioinform..

[5]  M. Tomita,et al.  Pathway Projector: Web-Based Zoomable Pathway Browser Using KEGG Atlas and Google Maps API , 2009, PloS one.

[6]  Ben Shneiderman,et al.  Designing Semantic Substrates for Visual Network Exploration , 2007, Inf. Vis..

[7]  Andrew Cumming,et al.  Towards visualising temporal features in large scale microarray time-series data , 2002, Proceedings Sixth International Conference on Information Visualisation.

[8]  Martin Graham,et al.  A Survey of Multiple Tree Visualisation , 2010, Inf. Vis..

[9]  Robert J. Hendley,et al.  Narcissus: visualising information , 1995 .

[10]  Aaron Quigley,et al.  Multivariate Graph Drawing using Parallel Coordinate Visualisations , 2008 .

[11]  Giorgio Valle,et al.  The Gene Ontology project in 2008 , 2007, Nucleic Acids Res..

[12]  Jean-Daniel Fekete,et al.  NodeTrix: a Hybrid Visualization of Social Networks , 2007, IEEE Transactions on Visualization and Computer Graphics.

[13]  Andreas Kerren,et al.  Visualization of mappings between the gene ontology and cluster trees , 2012, Visualization and Data Analysis.

[14]  Tim Dwyer,et al.  Visual analysis of network centralities , 2006, APVIS.

[15]  Manojit Sarkar,et al.  Graphical fisheye views , 1994, CACM.

[16]  Christopher J. Rawlings,et al.  Graph-based analysis and visualization of experimental results with ONDEX , 2006, Bioinform..

[17]  Colin Ware,et al.  Information Visualization: Perception for Design , 2000 .

[18]  Carl Gutwin,et al.  A Comparison of Fisheye Lenses for Interactive Layout Tasks , 2004, Graphics Interface.

[19]  Lennart Martens,et al.  The Ontology Lookup Service: more data and better tools for controlled vocabulary queries , 2008, Nucleic Acids Res..

[20]  Jarke J. van Wijk,et al.  Eurographics/ Ieee-vgtc Symposium on Visualization 2008 Visual Inspection of Multivariate Graphs , 2022 .

[21]  Alfred Inselberg,et al.  Parallel coordinates: a tool for visualizing multi-dimensional geometry , 1990, Proceedings of the First IEEE Conference on Visualization: Visualization `90.

[22]  Masahiro Takatsuka,et al.  Visualizing multivariate network on the surface of a sphere , 2006, APVIS.

[23]  Herman Chernoff,et al.  The Use of Faces to Represent Points in k- Dimensional Space Graphically , 1973 .

[24]  Helwig Hauser,et al.  Angular brushing of extended parallel coordinates , 2002, IEEE Symposium on Information Visualization, 2002. INFOVIS 2002..

[25]  Pierre Dragicevic,et al.  GraphDice: A System for Exploring Multivariate Social Networks , 2010, Comput. Graph. Forum.

[26]  Hans-Peter Kriegel,et al.  Recursive pattern: a technique for visualizing very large amounts of data , 1995, Proceedings Visualization '95.

[27]  John T. Stasko,et al.  Toward a Deeper Understanding of the Role of Interaction in Information Visualization , 2007, IEEE Transactions on Visualization and Computer Graphics.

[28]  Heidrun Schumann,et al.  CGV - An interactive graph visualization system , 2009, Comput. Graph..

[29]  Jarke J. van Wijk,et al.  Bridging the Semantic Gap: Visualizing Transition Graphs with User-Defined Diagrams , 2007, IEEE Computer Graphics and Applications.

[30]  Ramana Rao,et al.  A focus+context technique based on hyperbolic geometry for visualizing large hierarchies , 1995, CHI '95.

[31]  Andreas Kerren,et al.  Toward the role of interaction in Visual Analytics , 2012, Proceedings Title: Proceedings of the 2012 Winter Simulation Conference (WSC).

[32]  Richard A. Becker,et al.  Brushing scatterplots , 1987 .

[33]  Daniel A. Keim,et al.  Designing Pixel-Oriented Visualization Techniques: Theory and Applications , 2000, IEEE Trans. Vis. Comput. Graph..

[34]  M. Sheelagh T. Carpendale,et al.  Edgelens: an interactive method for managing edge congestion in graphs , 2003, IEEE Symposium on Information Visualization 2003 (IEEE Cat. No.03TH8714).

[35]  Kwan-Liu Ma,et al.  MobiVis: A Visualization System for Exploring Mobile Data , 2008, 2008 IEEE Pacific Visualization Symposium.

[36]  Ben Shneiderman,et al.  Interactively Exploring Hierarchical Clustering Results , 2003 .

[37]  J. Hartigan.  Printer graphics for clustering , 1975 .

[38]  Rosane Minghim,et al.  Multidimensional Projections for Visual Analysis of Social Networks , 2012, Journal of Computer Science and Technology.

[39]  Falk Schreiber,et al.  VANTED: A system for advanced data analysis and visualization in the context of biological networks , 2006, BMC Bioinformatics.

[40]  Daniel A. Keim,et al.  Visual Analytics: Definition, Process, and Challenges , 2008, Information Visualization.

[41]  Andreas Kerren,et al.  Multivariate Network Exploration with JauntyNets , 2013, 2013 17th International Conference on Information Visualisation.

[42]  Jonathan C. Roberts,et al.  Exploratory Visualization with Multiple Linked Views , 2004 .

[43]  Chaomei Chen,et al.  Information Visualization: Beyond the Horizon , 2006 .

[44]  John T. Stasko,et al.  Jigsaw: Supporting Investigative Analysis through Interactive Visualization , 2007, 2007 IEEE Symposium on Visual Analytics Science and Technology.

[45]  Ivan Herman,et al.  Graph Visualization and Navigation in Information Visualization: A Survey , 2000, IEEE Trans. Vis. Comput. Graph..

[46]  Jarke J. van Wijk,et al.  Force‐Directed Edge Bundling for Graph Visualization , 2009, Comput. Graph. Forum.

[47]  Andreas Kerren,et al.  The Network Lens: Interactive Exploration of Multivariate Networks Using Visual Filtering , 2010, 2010 14th International Conference Information Visualisation.

[48]  G. Polis,et al.  Food webs: integration of patterns and dynamics , 1997 .

[49]  Martin Wattenberg,et al.  Visual exploration of multivariate graphs , 2006, CHI.

[50]  Mark Green,et al.  The Information Cube: Using Transparency in 3D Information Visualization , 1993 .

[51]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[52]  Daniel A. Keim,et al.  Scalable Pixel Based Visual Data Exploration , 2006, VIEW.

[53]  Jeffrey Heer,et al.  Divided Edge Bundling for Directional Network Data , 2011, IEEE Transactions on Visualization and Computer Graphics.

[54]  Heidrun Schumann,et al.  Visual Methods for Analyzing Time-Oriented Data , 2008, IEEE Transactions on Visualization and Computer Graphics.

[55]  U. Brandes,et al.  GraphML Progress Report ? Structural Layer Proposal , 2001 .

[56]  Danny Holten,et al.  Hierarchical Edge Bundles: Visualization of Adjacency Relations in Hierarchical Data , 2006, IEEE Transactions on Visualization and Computer Graphics.

[57]  Patrick Baudisch,et al.  Keeping things in context: a comparative evaluation of focus plus context screens, overviews, and zooming , 2002, CHI.

[58]  Mathias Pohl,et al.  Visual Representations , 2006, Human-Centered Visualization Environments.

[59]  Harald C. Gall,et al.  Visualizing multiple evolution metrics , 2005, SoftVis '05.

[60]  M. F.,et al.  Bibliography , 1985, Experimental Gerontology.

[61]  Donald E. Knuth,et al.  The Stanford GraphBase - a platform for combinatorial computing , 1993 .

[62]  Jeffrey Heer,et al.  prefuse: a toolkit for interactive information visualization , 2005, CHI.

[63]  Falk Schreiber,et al.  Analysis of Biological Networks (Wiley Series in Bioinformatics) , 2008 .

[64]  Frank Allgöwer,et al.  Uncertainty-aware visual analysis of biochemical reaction networks , 2012, 2012 IEEE Symposium on Biological Data Visualization (BioVis).

[65]  Daniel A. Keim,et al.  Visual Analytics , 2009, Encyclopedia of Database Systems.

[66]  Andreas Kerren,et al.  Exploring biological data: Mappings between ontology- and cluster-based representations , 2013, Inf. Vis..

[67]  Frederik Börnke.  Protein Interaction Networks , 2007 .

[68]  M. Gerstein,et al.  Getting connected: analysis and principles of biological networks. , 2007, Genes & development.

[69]  Matthew O. Ward,et al.  A Taxonomy of Glyph Placement Strategies for Multidimensional Data Visualization , 2002, Inf. Vis..

[70]  Peter Eades,et al.  A Heuristic for Graph Drawing , 1984 .

[71]  Falk Schreiber,et al.  Integrating data from biological experiments into metabolic networks with the DBE information system , 2004, Silico Biol..

[72]  Andreas Kerren,et al.  Interactive Exploration and Analysis of Network Centralities , 2011 .

[73]  Tamara Munzner,et al.  H3: laying out large directed graphs in 3D hyperbolic space , 1997, Proceedings of VIZ '97: Visualization Conference, Information Visualization Symposium and Parallel Rendering Symposium.

[74]  Zhenjun Hu,et al.  VisANT: data-integrating visual framework for biological networks and modules , 2005, Nucleic Acids Res..

[75]  Chris T. A. Evelo,et al.  Presenting and exploring biological pathways with PathVisio , 2008, BMC Bioinformatics.

[76]  Jarke J. van Wijk,et al.  Smooth and efficient zooming and panning , 2003, IEEE Symposium on Information Visualization 2003 (IEEE Cat. No.03TH8714).

[77]  Christophe Hurter,et al.  Skeleton-Based Edge Bundling for Graph Visualization , 2011, IEEE Transactions on Visualization and Computer Graphics.

[78]  Susumu Goto,et al.  The KEGG databases at GenomeNet , 2002, Nucleic Acids Res..

[79]  Andreas Kerren,et al.  Analyzing Multiple Network Centralities with ViNCent , 2012, SIGRAD.

[80]  Hiroaki Kitano,et al.  CellDesigner: a process diagram editor for gene-regulatory and biochemical networks , 2003 .

[81]  Jonathan C. Roberts,et al.  Visual comparison for information visualization , 2011, Inf. Vis..

[82]  Tim Dwyer,et al.  Optimal Leaf Ordering for Two and a Half Dimensional Phylogenetic Tree Visualisation , 2004, InVis.au.

[83]  Boris Mirkin,et al.  Clustering For Data Mining: A Data Recovery Approach (Chapman & Hall/Crc Computer Science) , 2005 .

[84]  Ben Shneiderman,et al.  Network Visualization by Semantic Substrates , 2006, IEEE Transactions on Visualization and Computer Graphics.

[85]  Michael Himsolt,et al.  GML: A portable Graph File Format , 2010 .

[86]  Tamara Munzner,et al.  GrouseFlocks: Steerable Exploration of Graph Hierarchy Space , 2008, IEEE Transactions on Visualization and Computer Graphics.

[87]  Heidrun Schumann,et al.  Enhanced Interactive Spiral Display , 2008 .

[88]  Tamara Munzner,et al.  TugGraph: Path-preserving hierarchies for browsing proximity and paths in graphs , 2009, 2009 IEEE Pacific Visualization Symposium.

[89]  Jaime Urquiza-Fuentes,et al.  Human-Centered Aspects , 2006, Human-Centered Visualization Environments.

[90]  Andreas Kerren,et al.  Visual Network Analysis of Dynamic Metabolic Pathways , 2010, ISVC.

[91]  Kim Marriott,et al.  Integrating Edge Routing into Force-Directed Layout , 2006, GD.

[92]  Helen C. Purchase,et al.  Experimental Human-Computer Interaction - A Practical Guide with Visual Examples , 2012 .

[93]  Vladyslav Aleksakhin.  Visualization of gene ontology and cluster analysis results , 2012 .

[94]  Colin Ware.  Designing with a 2 1/2-D Attitude , 2001 .

[95]  P. Shannon,et al.  Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.

[96]  D. Botstein,et al.  Cluster analysis and display of genome-wide expression patterns. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[97]  Heidrun Schumann,et al.  Fisheye Tree Views and Lenses for Graph Visualization , 2006, Tenth International Conference on Information Visualisation (IV'06).

[98]  David S. Johnson,et al.  Crossing Number is NP-Complete , 1983 .

[99]  Heidrun Schumann,et al.  Smart Lenses , 2008, Smart Graphics.

[100]  Jessie B. Kennedy,et al.  Coordinated graph and scatter-plot views for the visual exploration of microarray time-series data , 2003, IEEE Symposium on Information Visualization 2003 (IEEE Cat. No.03TH8714).

[101]  Jock D. Mackinlay,et al.  Cone Trees: animated 3D visualizations of hierarchical information , 1991, CHI.

[102]  Pierre Dragicevic,et al.  Rolling the Dice: Multidimensional Visual Exploration using Scatterplot Matrix Navigation , 2008, IEEE Transactions on Visualization and Computer Graphics.

[103]  Ilir Jusufi,et al.  Towards the Visualization of Multivariate Biochemical Networks , 2012 .

[104]  Michael Kaufmann,et al.  Comparing trees via crossing minimization , 2010, J. Comput. Syst. Sci..

[105]  Luay Nakhleh,et al.  Phylogenetic networks , 2004 .

[106]  Dieter Schmalstieg,et al.  enRoute: Dynamic path extraction from biological pathway maps for in-depth experimental data analysis , 2012, 2012 IEEE Symposium on Biological Data Visualization (BioVis).

[107]  Michael Kaufmann,et al.  Drawing graphs: methods and models , 2001 .

[108]  Ilir Jusufi,et al.  A New Radial Space-Filling Visualization Approach for Planar st-Graphs , 2012 .

[109]  Ben Shneiderman,et al.  Tree-maps: a space-filling approach to the visualization of hierarchical information structures , 1991, Proceeding Visualization '91.

[110]  Andreas Kerren,et al.  Introduction to Human-Centered Visualization Environments , 2006, Human-Centered Visualization Environments.

[111]  Donald E. Knuth,et al.  The art of computer programming: V.1.: Fundamental algorithms , 1997 .

[112]  Roberto Therón,et al.  Hierarchical-Temporal Data Visualization Using a Tree-Ring Metaphor , 2006, Smart Graphics.

[113]  Andreas Kerren,et al.  Novel Visual Representations for Software Metrics Using 3D and Animation , 2009, Software Engineering.

[114]  Andreas Kerren,et al.  3D kiviat diagrams for the interactive analysis of software metric trends , 2010, SOFTVIS '10.

[115]  Robert Spence,et al.  Information Visualization: Design for Interaction (2nd Edition) , 2006 .

[116]  Robert Kosara,et al.  Challenges and Unsolved Problems , 2006, Human-Centered Visualization Environments.

[117]  Tamara Munzner,et al.  Visualizing the structure of the World Wide Web in 3D hyperbolic space , 1995, VRML '95.

[118]  M. V. Velzen,et al.  Self-organizing maps , 2007 .

[119]  Andreas Kerren,et al.  CluMa-GO: Bring Gene Ontologies and Hierarchical Clusterings Together , 2011 .

[120]  Daniel H. Huson,et al.  Tanglegrams for rooted phylogenetic trees and networks , 2011, Bioinform..