TelomereHunter – in silico estimation of telomere content and composition from cancer genomes
暂无分享,去创建一个
Stefan M. Pfister | Paul A. Northcott | Ivo Buchhalter | Barbara Hutter | Stefan Fröhling | David T. W. Jones | Benedikt Brors | Lars Feuerbach | Philip Ginsbach | Karsten Rippe | Peter Lichter | Lina Sieverling | Katharina I. Deeg | Sadaf S. Mughal | Priya Chudasama | Hanno Glimm | Claudia Scholl | David C. Jones | S. Fröhling | B. Hutter | P. Northcott | P. Lichter | S. Pfister | B. Brors | K. Rippe | C. Scholl | H. Glimm | P. Chudasama | I. Buchhalter | L. Feuerbach | L. Sieverling | Philip Ginsbach | S. Mughal | Priya Chudasama
[1] David T. W. Jones,et al. Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing , 2014, Nature.
[2] R. Wilson,et al. Assessing telomeric DNA content in pediatric cancers using whole-genome sequencing data , 2012, Genome Biology.
[3] Mark Hills,et al. Telomere length measurement-caveats and a critical assessment of the available technologies and tools. , 2012, Mutation research.
[4] J. Shay,et al. Role of Telomeres and Telomerase in Aging and Cancer. , 2016, Cancer discovery.
[5] Roland Eils,et al. Integrative genomic and transcriptomic analysis of leiomyosarcoma , 2018, Nature Communications.
[6] N. Carter,et al. A DNA damage checkpoint response in telomere-initiated senescence , 2003, Nature.
[7] R. Cawthon. Telomere measurement by quantitative PCR. , 2002, Nucleic acids research.
[8] J. Shay,et al. Senescence and immortalization: role of telomeres and telomerase. , 2005, Carcinogenesis.
[9] C B Harley,et al. Specific association of human telomerase activity with immortal cells and cancer. , 1994, Science.
[10] R. Reddel,et al. Evidence for an alternative mechanism for maintaining telomere length in human tumors and tumor-derived cell lines , 1997, Nature Medicine.
[11] Xin Hu,et al. Systematic analysis of telomere length and somatic alterations in 31 cancer types , 2017, Nature Genetics.
[12] N J Royle,et al. The plasticity of human telomeres demonstrated by a hypervariable telomere repeat array that is located on some copies of 16p and 16q. , 1999, Human molecular genetics.
[13] J. Arthur,et al. Comparative analysis of whole genome sequencing-based telomere length measurement techniques. , 2017, Methods.
[14] Richard Durbin,et al. Estimating telomere length from whole genome sequence data , 2014, Nucleic acids research.
[15] Roland Eils,et al. Recurrent MET fusion genes represent a drug target in pediatric glioblastoma , 2016, Nature Medicine.
[16] H. Pickett,et al. Variant repeats are interspersed throughout the telomeres and recruit nuclear receptors in ALT cells , 2012, The Journal of cell biology.
[17] C. Harley,et al. Telomeres shorten during ageing of human fibroblasts , 1990, Nature.
[18] Roland Eils,et al. Genomic footprints of activated telomere maintenance mechanisms in cancer , 2017, bioRxiv.
[19] Matthew J. Betts,et al. Dissecting the genomic complexity underlying medulloblastoma , 2012, Nature.
[20] Andy G Lynch,et al. Telomerecat: A ploidy-agnostic method for estimating telomere length from whole genome sequencing data , 2017, Scientific Reports.
[21] Amy Y. M. Au,et al. DNA C-circles are specific and quantifiable markers of alternative-lengthening-of-telomeres activity , 2009, Nature Biotechnology.
[22] Richard Durbin,et al. Fast and accurate long-read alignment with Burrows–Wheeler transform , 2010, Bioinform..
[23] Richard Durbin,et al. Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .
[24] H. Pickett,et al. Molecular characterization of inter-telomere and intra-telomere mutations in human ALT cells , 2002, Nature Genetics.
[25] Lilit Nersisyan,et al. Computel: Computation of Mean Telomere Length from Whole-Genome Next-Generation Sequencing Data , 2015, PloS one.
[26] Mark Hills,et al. Telomere extension by telomerase and ALT generates variant repeats by mechanistically distinct processes , 2013, Nucleic acids research.
[27] Philip Thomas,et al. A quantitative real-time PCR method for absolute telomere length. , 2008, BioTechniques.
[28] et al.,et al. The RNA component of human telomerase , 1995, Science.
[29] Erdahl T. Teber,et al. Telomere sequence content can be used to determine ALT activity in tumours , 2018, Nucleic acids research.