Genome-wide characterization and expression analysis of Erf gene family in cotton

[1]  G. Chung,et al.  Genome-wide investigation and expression analysis of APETALA-2 transcription factor subfamily reveals its evolution, expansion and regulatory role in abiotic stress responses in Indica Rice (Oryza sativa L. ssp. indica). , 2020, Genomics.

[2]  Muqing Zhang,et al.  Genome-wide identification and expression analysis of AP2/ERF transcription factors in sugarcane (Saccharum spontaneum L.) , 2020, BMC Genomics.

[3]  Yuan Qin,et al.  Genome-wide identification and expression analysis of the ERF transcription factor family in pineapple (Ananas comosus (L.) Merr.) , 2020, PeerJ.

[4]  Margaret H. Frank,et al.  TBtools - an integrative toolkit developed for interactive analyses of big biological data. , 2020, Molecular plant.

[5]  A. Alemzadeh,et al.  Genome-wide analysis of AP2/ERF transcription factors family in Brassica napus , 2020, Physiology and Molecular Biology of Plants.

[6]  John Z. Yu,et al.  Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution , 2020, Nature Genetics.

[7]  Shanshan Yang,et al.  Correction to: Comparative transcriptomics reveals PrrABmediated control of metabolic, respiration, energy-generating, and dormancy pathways in Mycobacterium smegmatis , 2019, BMC Genomics.

[8]  Mingzhou Song,et al.  A genome-wide analysis of pentatricopeptide repeat (PPR) protein-encoding genes in four Gossypium species with an emphasis on their expression in floral buds, ovules, and fibers in upland cotton , 2019, Molecular Genetics and Genomics.

[9]  Rahul Kumar,et al.  The expanding roles of APETALA2/Ethylene Responsive Factors and their potential applications in crop improvement. , 2019, Briefings in functional genomics.

[10]  Yuan Qin,et al.  Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Pineapple , 2019, Tropical Plant Biology.

[11]  Tianzhen Zhang,et al.  Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton , 2019, Nature Genetics.

[12]  Dong-hong Min,et al.  Genome-Wide Analysis of LIM Family Genes in Foxtail Millet (Setaria italica L.) and Characterization of the Role of SiWLIM2b in Drought Tolerance , 2019, International journal of molecular sciences.

[13]  L. Tran,et al.  The R2R3-MYB Transcription Factor MYB49 Regulates Cadmium Accumulation1 , 2019, Plant Physiology.

[14]  Jun Yang,et al.  Medicago AP2-Domain Transcription Factor WRI5a Is a Master Regulator of Lipid Biosynthesis and Transfer during Mycorrhizal Symbiosis. , 2018, Molecular plant.

[15]  S. K. Kazemitabar,et al.  Genome-wide exploration of C2H2 zinc finger family in durum wheat (Triticum turgidum ssp. Durum): insights into the roles in biological processes especially stress response , 2018, BioMetals.

[16]  K. Shahzad,et al.  Comparative Chloroplast Genomics of Dipsacales Species: Insights Into Sequence Variation, Adaptive Evolution, and Phylogenetic Relationships , 2018, Front. Plant Sci..

[17]  Piero Fariselli,et al.  BUSCA: an integrative web server to predict subcellular localization of proteins , 2018, Nucleic Acids Res..

[18]  Wei Gao,et al.  Heterogeneous expression of the cotton R2R3-MYB transcription factor GbMYB60 increases salt sensitivity in transgenic Arabidopsis , 2018, Plant Cell, Tissue and Organ Culture (PCTOC).

[19]  D. R. Hoagland,et al.  The Water-Culture Method for Growing Plants Without Soil , 2018 .

[20]  Maokai Yan,et al.  Evolutionary and expression analyses of soybean basic Leucine zipper transcription factor family , 2018, BMC Genomics.

[21]  Publisher's Note , 2018, Anaesthesia.

[22]  Sandui Guo,et al.  CottonFGD: an integrated functional genomics database for cotton , 2017, BMC Plant Biology.

[23]  O. Loudet,et al.  Abiotic stress, stress combinations and crop improvement potential. , 2017, The Plant journal : for cell and molecular biology.

[24]  G. Jeena,et al.  Regulation of Apetala2/Ethylene Response Factors in Plants , 2017, Front. Plant Sci..

[25]  C. Gu,et al.  Multiple regulatory roles of AP2/ERF transcription factor in angiosperm , 2017, Botanical Studies.

[26]  Zhan Li,et al.  Exogenous spermidine improves seed germination of sweet corn via involvement in phytohormone interactions, H2O2 and relevant gene expression , 2017, BMC Plant Biology.

[27]  D. Gargano,et al.  Footprint of the eastern euroasian past in Italian populations of Cryptotaenia thomasii (Ten.) DC , 2017, Botanical Studies.

[28]  Dong-hong Min,et al.  Genome-wide analysis of the lectin receptor-like kinase family in foxtail millet (Setaria italica L.) , 2016, Plant Cell, Tissue and Organ Culture (PCTOC).

[29]  M. Wang,et al.  Genome-wide identification, phylogeny and expression analysis of AP2/ERF transcription factors family in Brachypodium distachyon , 2016, BMC Genomics.

[30]  Linhai Wang,et al.  Insight into the AP2/ERF transcription factor superfamily in sesame and expression profiling of DREB subfamily under drought stress , 2016, BMC Plant Biology.

[31]  Sudhir Kumar,et al.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. , 2016, Molecular biology and evolution.

[32]  Robert D. Finn,et al.  The Pfam protein families database: towards a more sustainable future , 2015, Nucleic Acids Res..

[33]  Caiping Cai,et al.  Gossypium barbadense genome sequence provides insight into the evolution of extra-long staple fiber and specialized metabolites , 2015, Scientific Reports.

[34]  S. Munné-Bosch,et al.  Ethylene Response Factors: A Key Regulatory Hub in Hormone and Stress Signaling1 , 2015, Plant Physiology.

[35]  Robert D. Finn,et al.  HMMER web server: 2015 update , 2015, Nucleic Acids Res..

[36]  Lei Fang,et al.  Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement , 2015, Nature Biotechnology.

[37]  He Zhang,et al.  Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution , 2015, Nature Biotechnology.

[38]  C. Xiang,et al.  Arabidopsis ERF109 mediates cross-talk between jasmonic acid and auxin biosynthesis during lateral root formation , 2014, Nature Communications.

[39]  Alex T. Kalinka,et al.  Introns and gene expression: Cellular constraints, transcriptional regulation, and evolutionary consequences , 2014, BioEssays : news and reviews in molecular, cellular and developmental biology.

[40]  D. He,et al.  Genome-wide identification and analysis of the aldehyde dehydrogenase (ALDH) gene superfamily of Gossypium raimondii. , 2014, Gene.

[41]  Xun Xu,et al.  Genome sequence of the cultivated cotton Gossypium arboreum , 2014, Nature Genetics.

[42]  Yingkao Hu,et al.  Soybean (Glycine max) expansin gene superfamily origins: segmental and tandem duplication events followed by divergent selection among subfamilies , 2014, BMC Plant Biology.

[43]  Adi Doron-Faigenboim,et al.  Ecology, Evolution and Organismal Biology Publications Ecology, Evolution and Organismal Biology Repeated Polyploidization of Gossypium Genomes and the Evolution of Spinnable Cotton Fibres , 2022 .

[44]  John Z. Yu,et al.  The draft genome of a diploid cotton Gossypium raimondii , 2012, Nature Genetics.

[45]  Jeremy D. DeBarry,et al.  MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity , 2012, Nucleic acids research.

[46]  Tanya Z. Berardini,et al.  The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools , 2011, Nucleic Acids Res..

[47]  D. Higgins,et al.  Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega , 2011, Molecular systems biology.

[48]  Youzhi Ma,et al.  Functions and application of the AP2/ERF transcription factor family in crop improvement. , 2011, Journal of integrative plant biology.

[49]  Claude W. dePamphilis,et al.  Ancestral polyploidy in seed plants and angiosperms , 2011, Nature.

[50]  Tianzhen Zhang,et al.  Structure, expression differentiation and evolution of duplicated fiber developmental genes in Gossypium barbadense and G. hirsutum , 2011, BMC Plant Biology.

[51]  S. Kikuchi,et al.  Gene structures, classification and expression models of the AP2/EREBP transcription factor family in rice. , 2011, Plant & cell physiology.

[52]  A. Sharma,et al.  Identification, phylogeny, and transcript profiling of ERF family genes during development and abiotic stress treatments in tomato , 2010, Molecular Genetics and Genomics.

[53]  K. Dietz,et al.  AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signalling , 2010, Protoplasma.

[54]  R. Rose,et al.  The Transcription Factor MtSERF1 of the ERF Subfamily Identified by Transcriptional Profiling Is Required for Somatic Embryogenesis Induced by Auxin Plus Cytokinin in Medicago truncatula1[W][OA] , 2008, Plant Physiology.

[55]  H. Takahara,et al.  Molecular cloning and characterization of a novel salt-inducible gene encoding an acidic isoform of PR-5 protein in soybean (Glycine max [L.] Merr.). , 2006, Plant physiology and biochemistry : PPB.

[56]  Jenn-Kang Hwang,et al.  Prediction of protein subcellular localization , 2006, Proteins.

[57]  X. Gu,et al.  Intron gain and loss in segmentally duplicated genes in rice , 2006, Genome Biology.

[58]  T. Fujimura,et al.  Genome-Wide Analysis of the ERF Gene Family in Arabidopsis and Rice[W] , 2006, Plant Physiology.

[59]  X. Deng,et al.  An Annotation Update via cDNA Sequence Analysis and Comprehensive Profiling of Developmental, Hormonal or Environmental Responsiveness of the Arabidopsis AP2/EREBP Transcription Factor Gene Family , 2005, Plant Molecular Biology.

[60]  W. Hartung,et al.  Differential responses of maize MIP genes to salt stress and ABA. , 2005, Journal of experimental botany.

[61]  S. Chen,et al.  Soybean DRE-binding transcription factors that are responsive to abiotic stresses , 2005, Theoretical and Applied Genetics.

[62]  S. Wessler.  Homing into the origin of the AP2 DNA binding domain. , 2005, Trends in plant science.

[63]  Steven B Cannon,et al.  The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana , 2004, BMC Plant Biology.

[64]  K. Shinozaki,et al.  DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold-inducible gene expression. , 2002, Biochemical and biophysical research communications.

[65]  G. An,et al.  Functional role of CAAT box element of the nopaline synthase (nos) promoter , 1999, Journal of Plant Biology.

[66]  T. MacRae,et al.  Transcription factors and their genes in higher plants functional domains, evolution and regulation. , 1999, European journal of biochemistry.

[67]  Yangrae Cho,et al.  The gain of three mitochondrial introns identifies liverworts as the earliest land plants , 1998, Nature.

[68]  Yuan Li,et al.  Arabidopsis CPK6 positively regulates ABA signaling and drought tolerance through phosphorylating ABA-responsive element binding factors. , 2019, Journal of experimental botany.

[69]  D. Fang.  Cotton Fiber: Physics, Chemistry and Biology , 2018, Springer International Publishing.

[70]  K. Kaufmann,et al.  Master Regulatory Transcription Factors in Plant Development: A Blooming Perspective. , 2018, Methods in molecular biology.

[71]  Jin-yuan Liu,et al.  Molecular cloning, expression profile and promoter analysis of a novel ethylene responsive transcription factor gene GhERF4 from cotton (Gossypium hirstum). , 2008, Plant physiology and biochemistry : PPB.

[72]  Kathleen Marchal,et al.  PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences , 2002, Nucleic Acids Res..