High quality reference genome of drumstick tree (Moringa oleifera Lam.), a potential perennial crop

[1]  Tetsuya Hayashi,et al.  Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads , 2014, Genome research.

[2]  Sean R. Eddy,et al.  Infernal 1.1: 100-fold faster RNA homology searches , 2013, Bioinform..

[3]  Sean R. Eddy,et al.  Rfam 11.0: 10 years of RNA families , 2012, Nucleic Acids Res..

[4]  Xun Xu,et al.  The genome of Prunus mume , 2012, Nature Communications.

[5]  Jian Wang,et al.  SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler , 2012, GigaScience.

[6]  R. RatheeshKumar,et al.  HSPIR: a manually annotated heat shock protein information resource , 2012, Bioinform..

[7]  Huanming Yang,et al.  Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers , 2011, Nature Biotechnology.

[8]  Mark E. Olson,et al.  Moringa oleifera: Un árbol multiusos para las zonas tropicales secas , 2011 .

[9]  Patrick Xuechun Zhao,et al.  psRNATarget: a plant small RNA target analysis server , 2011, Nucleic Acids Res..

[10]  Michael S. Barker,et al.  The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants , 2011, Science.

[11]  M. Horwath,et al.  Theoretical Investigation of a Reported Antibiotic from the 'Miracle Tree' Moringa Oleifera , 2011 .

[12]  Walter Pirovano,et al.  BIOINFORMATICS APPLICATIONS , 2022 .

[13]  M. Clements,et al.  Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana , 2010, Proceedings of the National Academy of Sciences.

[14]  F. Crea,et al.  Profiling selected phytochemicals and nutrients in different tissues of the multipurpose tree Moringa oleifera L., grown in Ghana , 2010 .

[15]  Roger E Bumgarner,et al.  The genome of the domesticated apple (Malus × domestica Borkh.) , 2010, Nature Genetics.

[16]  Mark Yandell,et al.  The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences , 2010, BMC Genomics.

[17]  Jun Yu,et al.  KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies , 2010, Genom. Proteom. Bioinform..

[18]  T. Sakurai,et al.  Genome sequence of the palaeopolyploid soybean , 2010, Nature.

[19]  Mihaela M. Martis,et al.  The Sorghum bicolor genome and the diversification of grasses , 2009, Nature.

[20]  Martin Vingron,et al.  Ontologizer 2.0 - a multifunctional tool for GO term enrichment analysis and data exploration , 2008, Bioinform..

[21]  Stephen M. Mount,et al.  The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus) , 2008, Nature.

[22]  A. Kruppa,et al.  Nucleolar binding sequences of the ribosomal protein S6e family reside in evolutionary highly conserved peptide clusters. , 2008, Molecular biology and evolution.

[23]  Stijn van Dongen,et al.  miRBase: tools for microRNA genomics , 2007, Nucleic Acids Res..

[24]  J. Poulain,et al.  The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla , 2007, Nature.

[25]  Ziheng Yang.  PAML 4: phylogenetic analysis by maximum likelihood. , 2007, Molecular biology and evolution.

[26]  Zhao Xu,et al.  LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons , 2007, Nucleic Acids Res..

[27]  Rebecca L Poole.  The TAIR database. , 2007, Methods in molecular biology.

[28]  Jun Li,et al.  KaKs_Calculator: Calculating Ka and Ks Through Model Selection and Model Averaging , 2007, Genom. Proteom. Bioinform..

[29]  M. Gribskov,et al.  The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray) , 2006, Science.

[30]  O. Meyuhas,et al.  Ribosomal protein S6 phosphorylation: from protein synthesis to cell size. , 2006, Trends in biochemical sciences.

[31]  Nello Cristianini,et al.  CAFE: a computational tool for the study of gene family evolution , 2006, Bioinform..

[32]  Pierre-Emmanuel Gleizes,et al.  Roles of eukaryotic ribosomal proteins in maturation and transport of pre-18S rRNA and ribosome function. , 2005, Molecular cell.

[33]  J. Jurka,et al.  Repbase Update, a database of eukaryotic repetitive elements , 2005, Cytogenetic and Genome Research.

[34]  Rolf Apweiler,et al.  InterProScan: protein domains identifier , 2005, Nucleic Acids Res..

[35]  Pavel A. Pevzner,et al.  De novo identification of repeat families in large genomes , 2005, ISMB.

[36]  E. Grotewold,et al.  The tomato early fruit specific gene Lefsm1 defines a novel class of plant-specific SANT/MYB domain proteins , 2005, Planta.

[37]  Steven Salzberg,et al.  TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders , 2004, Bioinform..

[38]  Burkhard Morgenstern,et al.  AUGUSTUS: a web server for gene finding in eukaryotes , 2004, Nucleic Acids Res..

[39]  R. Durbin,et al.  GeneWise and Genomewise. , 2004, Genome research.

[40]  P. Benveniste.  Biosynthesis and accumulation of sterols. , 2004, Annual review of plant biology.

[41]  Robert C. Edgar,et al.  MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.

[42]  C. Peterson,et al.  The SANT domain: a unique histone-tail-binding module? , 2004, Nature Reviews Molecular Cell Biology.

[43]  C. Stoeckert,et al.  OrthoMCL: identification of ortholog groups for eukaryotic genomes. , 2003, Genome research.

[44]  Micheline Fromont-Racine,et al.  Ribosome assembly in eukaryotes. , 2003, Gene.

[45]  Rolf Apweiler,et al.  The Gene Ontology Annotation (GOA) Project—Application of GO in SWISS-PROT, TrEMBL and InterPro , 2003, Comparative and functional genomics.

[46]  M. Degano,et al.  Crystal structure of a hypoallergenic isoform of the major birch pollen allergen Bet v 1 and its likely biological function as a plant steroid carrier. , 2003, Journal of molecular biology.

[47]  Maria Jesus Martin,et al.  The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003 , 2003, Nucleic Acids Res..

[48]  Alexander E. Kel,et al.  TRANSFAC®: transcriptional regulation, from patterns to profiles , 2003, Nucleic Acids Res..

[49]  C. Verrijzer,et al.  Characterization of the Extended Myb-like DNA-binding Domain of Trithorax Group Protein Zeste* , 2002, The Journal of Biological Chemistry.

[50]  E. Birney,et al.  Immunity-Related Genes and Gene Families in Anopheles gambiae , 2002, Science.

[51]  Jianming Li,et al.  BRI1/BAK1, a Receptor Kinase Pair Mediating Brassinosteroid Signaling , 2002, Cell.

[52]  B. Shuai,et al.  The Lateral Organ Boundaries Gene Defines a Novel, Plant-Specific Gene Family1 , 2002, Plant Physiology.

[53]  Huanming Yang,et al.  A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica) , 2002, Science.

[54]  H. Schaller,et al.  The ratio of campesterol to sitosterol that modulates growth in Arabidopsis is controlled by STEROL METHYLTRANSFERASE 2;1. , 2001, The Plant journal : for cell and molecular biology.

[55]  R. R. Samaha,et al.  Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. , 2000, Science.

[56]  The Arabidopsis Genome Initiative.  Analysis of the genome sequence of the flowering plant Arabidopsis thaliana , 2000, Nature.

[57]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[58]  Susumu Goto,et al.  KEGG: Kyoto Encyclopedia of Genes and Genomes , 2000, Nucleic Acids Res..

[59]  B. Cavada,et al.  Compositional and nutritional attributes of seeds from the multiple purpose tree Moringa oleifera Lamarck , 1999 .

[60]  G. Benson,et al.  Tandem repeats finder: a program to analyze DNA sequences. , 1999, Nucleic acids research.

[61]  Michael D. McLean,et al.  The Metabolism and Functions of [gamma]-Aminobutyric Acid. , 1999, Plant physiology.

[62]  J. Thompson,et al.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. , 1997, Nucleic acids research.

[63]  A. Pavesi,et al.  Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. , 1997, Journal of molecular biology.

[64]  K. Becker,et al.  Nutrients and antiquality factors in different morphological parts of the Moringa oleifera tree , 1997, The Journal of Agricultural Science.

[65]  S. Eddy,et al.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. , 1997, Nucleic acids research.

[66]  M. Palada.  Moringa (Moringa oleifera Lam.): A Versatile Tree Crop with Horticultural Potential in the Subtropical United States , 1996 .

[67]  C. Connelly,et al.  Budding Yeast SKP1 Encodes an Evolutionarily Conserved Kinetochore Protein Required for Cell Cycle Progression , 1996, Cell.

[68]  Stephen J. Elledge,et al.  SKP1 Connects Cell Cycle Regulators to the Ubiquitin Proteolysis Machinery through a Novel Motif, the F-Box , 1996, Cell.

[69]  B. Shelp,et al.  In situ[14C]glutamate metabolism by developing soybean cotyledons. I: Metabolic routes , 1994 .

[70]  R. Morimoto,et al.  Cells in stress: transcriptional activation of heat shock genes. , 1993, Science.

[71]  A. Bown,et al.  The production and efflux of 4-aminobutyrate in isolated mesophyll cells. , 1992, Plant physiology.

[72]  P. Nair,et al.  Metabolism, enzymology and possible roles of 4-aminobutyrate in higher plants. , 1990 .

[73]  R. Valenta,et al.  The gene coding for the major birch pollen allergen Betv1, is highly homologous to a pea disease resistance response gene. , 1989, The EMBO journal.

[74]  S. Lindquist,et al.  The heat-shock proteins. , 1988, Annual review of genetics.

[75]  S. Lindquist.  The heat-shock response. , 1986, Annual review of biochemistry.