Importance of systems biology in engineering microbes for biofuel production.
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Jay D Keasling | Aindrila Mukhopadhyay | Alyssa M. Redding | J. Keasling | A. Mukhopadhyay | Alyssa M Redding | B. J. Rutherford | Becky J Rutherford
[1] Gary L. Andersen,et al. High-Density Universal 16S rRNA Microarray Analysis Reveals Broader Diversity than Typical Clone Library When Sampling the Environment , 2007, Microbial Ecology.
[2] Jay D Keasling,et al. Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli. , 2007, Metabolic engineering.
[3] Timothy S. Ham,et al. Production of the antimalarial drug precursor artemisinic acid in engineered yeast , 2006, Nature.
[4] G. Stephanopoulos,et al. Metabolic flux analysis in a nonstationary system: fed-batch fermentation of a high yielding strain of E. coli producing 1,3-propanediol. , 2007, Metabolic engineering.
[5] S. Carr,et al. Reporting Protein Identification Data , 2006, Molecular & Cellular Proteomics.
[6] H. Harmsen,et al. Mapping the Pathways to StaphylococcalPathogenesis by Comparative Secretomics , 2006, Microbiology and Molecular Biology Reviews.
[7] R. Aebersold,et al. Mass Spectrometry and Protein Analysis , 2006, Science.
[8] A. Khodursky,et al. Overflow Metabolism in Escherichia coli during Steady-State Growth: Transcriptional Regulation and Effect of the Redox Ratio , 2006, Applied and Environmental Microbiology.
[9] G. Stephanopoulos,et al. Global transcription machinery engineering: a new approach for improving cellular phenotype. , 2007, Metabolic engineering.
[10] Rick Stevens,et al. Essential genes on metabolic maps. , 2006, Current opinion in biotechnology.
[11] J. Liao,et al. Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels , 2008, Nature.
[12] Lucy Shapiro,et al. Getting organized — how bacterial cells move proteins and DNA , 2008, Nature Reviews Microbiology.
[13] Peter D. Karp,et al. The EcoCyc and MetaCyc databases , 2000, Nucleic Acids Res..
[14] Steven P Gygi,et al. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry , 2007, Nature Methods.
[15] Lukas N. Mueller,et al. An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data. , 2008, Journal of proteome research.
[16] Wenyun Lu,et al. Separation and quantitation of water soluble cellular metabolites by hydrophilic interaction chromatography-tandem mass spectrometry. , 2006, Journal of chromatography. A.
[17] S. Herrera. Bonkers about biofuels , 2006, Nature Biotechnology.
[18] Yijia Xiong,et al. Remodeling of the bacterial RNA polymerase supramolecular complex in response to environmental conditions. , 2007, Biochemistry.
[19] Amy K. Schmid,et al. A Predictive Model for Transcriptional Control of Physiology in a Free Living Cell , 2007, Cell.
[20] L. Wackett. Biomass to fuels via microbial transformations. , 2008, Current opinion in chemical biology.
[21] Ming Dong,et al. A "tagless" strategy for identification of stable protein complexes genome-wide by multidimensional orthogonal chromatographic separation and iTRAQ reagent tracking. , 2008, Journal of proteome research.
[22] Jennifer L. Osborn,et al. Direct multiplexed measurement of gene expression with color-coded probe pairs , 2008, Nature Biotechnology.
[23] Swapnil Chhabra,et al. Biofuel alternatives to ethanol: pumping the microbial well. , 2008, Trends in biotechnology.
[24] Yan Lin,et al. Ethanol fermentation from biomass resources: current state and prospects , 2006, Applied Microbiology and Biotechnology.
[25] Pei Yee Ho,et al. Multiple High-Throughput Analyses Monitor the Response of E. coli to Perturbations , 2007, Science.
[26] M. Adams,et al. Posttranslational Protein Modification in Archaea , 2005, Microbiology and Molecular Biology Reviews.
[27] David J. Reiss,et al. The Gaggle: An open-source software system for integrating bioinformatics software and data sources , 2006, BMC Bioinformatics.
[28] S. Govindarajan,et al. Codon bias and heterologous protein expression. , 2004, Trends in biotechnology.
[29] B. Poolman,et al. Mechanisms of membrane toxicity of hydrocarbons. , 1995, Microbiological reviews.
[30] Jay D Keasling,et al. Addressing the need for alternative transportation fuels: the Joint BioEnergy Institute. , 2008, ACS chemical biology.
[31] Mark D'Ascenzo,et al. 8‐Plex quantitation of changes in cerebrospinal fluid protein expression in subjects undergoing intravenous immunoglobulin treatment for Alzheimer's disease , 2007, Proteomics.
[32] E. O’Shea,et al. Quantification of protein half-lives in the budding yeast proteome , 2006, Proceedings of the National Academy of Sciences.
[33] T. W. Jeffries,et al. Bacteria engineered for fuel ethanol production: current status , 2003, Applied Microbiology and Biotechnology.
[34] G. Stephanopoulos,et al. Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli. , 2005, Metabolic engineering.
[35] R. Fleischmann,et al. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. , 1995, Science.
[36] Ronald W. Davis,et al. Functional profiling of the Saccharomyces cerevisiae genome , 2002, Nature.
[37] K. Parker,et al. Multiplexed Protein Quantitation in Saccharomyces cerevisiae Using Amine-reactive Isobaric Tagging Reagents*S , 2004, Molecular & Cellular Proteomics.
[38] Rainer Kalscheuer,et al. Microdiesel: Escherichia coli engineered for fuel production. , 2006, Microbiology.
[39] Ralf Takors,et al. Metabolic flux analysis at ultra short time scale: isotopically non-stationary 13C labeling experiments. , 2007, Journal of biotechnology.
[40] Seon-Won Kim,et al. An update on microbial carotenoid production: application of recent metabolic engineering tools , 2007, Applied Microbiology and Biotechnology.
[41] L. Jarboe,et al. Development of ethanologenic bacteria. , 2007, Advances in biochemical engineering/biotechnology.
[42] R. Overbeek,et al. Characterization of the Staphylococcus aureus Heat Shock, Cold Shock, Stringent, and SOS Responses and Their Effects on Log-Phase mRNA Turnover , 2006, Journal of Bacteriology.
[43] Sunia A Trauger,et al. Correlating the Transcriptome, Proteome, and Metabolome in the Environmental Adaptation of a Hyperthermophile , 2022 .
[44] M. Kumar,et al. The commercial production of chemicals using pathway engineering. , 2000, Biochimica et biophysica acta.
[45] C. Nakamura,et al. Metabolic engineering for the microbial production of 1,3-propanediol. , 2003, Current opinion in biotechnology.
[46] Edward L Huttlin,et al. Prediction of error associated with false-positive rate determination for peptide identification in large-scale proteomics experiments using a combined reverse and forward peptide sequence database strategy. , 2007, Journal of proteome research.
[47] U. Sauer,et al. Article number: 62 REVIEW Metabolic networks in motion: 13 C-based flux analysis , 2022 .
[48] T. Mascher,et al. Cell Envelope Stress Response in Bacillus licheniformis: Integrating Comparative Genomics, Transcriptional Profiling, and Regulon Mining To Decipher a Complex Regulatory Network , 2006, Journal of bacteriology.
[49] L. Jønson,et al. Genome‐wide identification of genes required for growth of Saccharomyces cerevisiae under ethanol stress , 2006, Yeast.
[50] Brian F. Pfleger,et al. Application of Functional Genomics to Pathway Optimization for Increased Isoprenoid Production , 2008, Applied and Environmental Microbiology.
[51] Katherine H. Huang,et al. The MicrobesOnline Web site for comparative genomics. , 2005, Genome research.
[52] R. Appel,et al. Guidelines for the next 10 years of proteomics , 2009, Proteomics.
[53] Sang Yup Lee,et al. The Escherichia coli Proteome: Past, Present, and Future Prospects , 2006, Microbiology and Molecular Biology Reviews.
[54] Marco Oldiges,et al. Metabolomics: current state and evolving methodologies and tools , 2007, Applied Microbiology and Biotechnology.
[55] Jay D Keasling,et al. Production of isoprenoid pharmaceuticals by engineered microbes , 2006, Nature chemical biology.
[56] Jason E. Stewart,et al. Minimum information about a microarray experiment (MIAME)—toward standards for microarray data , 2001, Nature Genetics.
[57] G. Reid,et al. Emerging methods in proteomics: top-down protein characterization by multistage tandem mass spectrometry. , 2007, The Analyst.
[58] M. Tomita,et al. Quantitative metabolome analysis using capillary electrophoresis mass spectrometry. , 2003, Journal of proteome research.
[59] Michael I. Jordan,et al. Toward a protein profile of Escherichia coli: Comparison to its transcription profile , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[60] Yinjie J. Tang,et al. Pathway Confirmation and Flux Analysis of Central Metabolic Pathways in Desulfovibrio vulgaris Hildenborough using Gas Chromatography-Mass Spectrometry and Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry , 2006, Journal of bacteriology.
[61] Margaret Werner-Washburne,et al. The genomics of yeast responses to environmental stress and starvation , 2002, Functional & Integrative Genomics.
[62] T. Ideker,et al. A new approach to decoding life: systems biology. , 2001, Annual review of genomics and human genetics.
[63] Baohua Gu,et al. GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes , 2007, The ISME Journal.
[64] Brian F. Pfleger,et al. Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes , 2006, Nature Biotechnology.