Complete mitochondrial genome sequence of Tridentiger bifasciatus and Tridentiger barbatus (Perciformes, Gobiidae): a mitogenomic perspective on the phylogenetic relationships of Gobiidae

[1]  Tianjun Xu,et al.  Complete mitochondrial genome of the Asian freshwater goby Synechogobius ommaturus (Perciformes, Gobioidei) , 2013, Mitochondrial DNA.

[2]  Tianjun Xu,et al.  Complete mitochondrial genome of the striped sandgoby Acentrogobius pflaumii (Perciformes, gobiidae) , 2012, Mitochondrial DNA.

[3]  D. Tang,et al.  Universal primers for amplification of the complete mitochondrial control region in marine fish species , 2012, Molecular Biology.

[4]  Tianjun Xu,et al.  Complete mitochondrial genome of the Walking goby Scartelaos histophorus (Perceformes, Gobiidae) , 2012, Mitochondrial DNA.

[5]  C. Cruaud,et al.  From endemism to widespread distribution: phylogeography of three amphidromous Sicyopterus species (Teleostei: Gobioidei: Sicydiinae) , 2012 .

[6]  Tianjun Xu,et al.  Complete mitochondrial genome of Oxuderces dentatus (Perciformes, Gobioidei) , 2012, Mitochondrial DNA.

[7]  Tianjun Xu,et al.  Complete mitochondrial genome of Trypauchen vagina (Perciformes, Gobioidei) , 2012, Mitochondrial DNA.

[8]  Tianjun Xu,et al.  Complete mitochondrial genome of the red drum, Sciaenops ocellatus (Perciformes, Sciaenidae): Absence of the typical conserved motif in the origin of the light-strand replication , 2012, Mitochondrial DNA.

[9]  M. Nei,et al.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. , 2011, Molecular biology and evolution.

[10]  Tianjun Xu,et al.  The complete mitochondrial genome of bighead croaker, Collichthys niveatus (Perciformes, Sciaenidae): structure of control region and phylogenetic considerations , 2011, Molecular Biology Reports.

[11]  Z. Song,et al.  The complete mitochondrial genome of the Sichuan taimen (Hucho bleekeri): repetitive sequences in the control region and phylogenetic implications for Salmonidae. , 2011, Marine genomics.

[12]  A. Couloux,et al.  Phylogeny and biogeography of Sicydiinae (Teleostei: Gobiidae) inferred from mitochondrial and nuclear genes , 2011 .

[13]  Tianjun Xu,et al.  Complete mitochondrial genome of the miiuy croaker Miichthys miiuy (Perciformes, Sciaenidae) with phylogenetic consideration. , 2010, Marine genomics.

[14]  P. J. Miller.  The osteology and adaptive features of Rhyacichthys aspro (Teleostei: Gobioidei) and the classification of gobioid fishes , 2010 .

[15]  Manuel Manchado,et al.  Evolutionary relatedness of mackerels of the genus Scomber based on complete mitochondrial genomes: strong support to the recognition of Atlantic Scomber colias and Pacific Scomber japonicus as distinct species. , 2010, Gene.

[16]  C. Thacker.  Phylogeny of Gobioidei and Placement within Acanthomorpha, with a New Classification and Investigation of Diversification and Character Evolution , 2009, Copeia.

[17]  D. Posada.  jModelTest: phylogenetic model averaging. , 2008, Molecular biology and evolution.

[18]  Christine E Thacker,et al.  Molecular phylogeny of basal gobioid fishes: Rhyacichthyidae, Odontobutidae, Xenisthmidae, Eleotridae (Teleostei: Perciformes: Gobioidei). , 2005, Molecular phylogenetics and evolution.

[19]  R. Ward,et al.  DNA barcoding Australia's fish species , 2005, Philosophical Transactions of the Royal Society B: Biological Sciences.

[20]  M. Gye,et al.  The complete mitochondrial genome of the javeline goby Acanthogobius hasta (Perciformes, Gobiidae) and phylogenetic considerations. , 2004, Gene.

[21]  Il-Chan Kim,et al.  The complete mitochondrial genome of the floating goby, Gymnogobius petschiliensis (Perciformes, Gobiidae). , 2004, Molecules and cells.

[22]  John P. Huelsenbeck,et al.  MrBayes 3: Bayesian phylogenetic inference under mixed models , 2003, Bioinform..

[23]  Michael Zuker,et al.  Mfold web server for nucleic acid folding and hybridization prediction , 2003, Nucleic Acids Res..

[24]  C. Thacker.  Molecular phylogeny of the gobioid fishes (Teleostei: Perciformes: Gobioidei). , 2003, Molecular phylogenetics and evolution.

[25]  Jeremy R. deWaard,et al.  Biological identifications through DNA barcodes , 2003, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[26]  M. Tsai,et al.  Molecular phylogeny of gobioid fishes (Perciformes: Gobioidei) based on mitochondrial 12S rRNA sequences. , 2001, Molecular phylogenetics and evolution.

[27]  M. Miya,et al.  Complete mitochondrial DNA sequence of Aulopus japonicus (Teleostei: Aulopiformes), a basal Eurypterygii: longer DNA sequences and higher-level relationships , 2001, Ichthyological Research.

[28]  Akihito,et al.  Evolutionary aspects of gobioid fishes based upon a phylogenetic analysis of mitochondrial cytochrome B genes. , 2000, Gene.

[29]  J. Boore.  Animal mitochondrial genomes. , 1999, Nucleic acids research.

[30]  P J Waddell,et al.  Using novel phylogenetic methods to evaluate mammalian mtDNA, including amino acid-invariant sites-LogDet plus site stripping, to detect internal conflicts in the data, with special reference to the positions of hedgehog, armadillo, and elephant. , 1999, Systematic biology.

[31]  P. Waddell,et al.  Towards resolving the interordinal relationships of placental mammals. , 1999, Systematic biology.

[32]  G. C. Johns,et al.  A comparative summary of genetic distances in the vertebrates from the mitochondrial cytochrome b gene. , 1998, Molecular biology and evolution.

[33]  J. Thompson,et al.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. , 1997, Nucleic acids research.

[34]  S. Eddy,et al.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. , 1997, Nucleic acids research.

[35]  W. Brown,et al.  Hydrophobicity and phylogeny , 1995, Nature.

[36]  T. Kocher,et al.  Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: early establishment of the vertebrate genome organization. , 1995, Genetics.

[37]  F. Pezold.  Evidence for a Monophyletic Gobiinae , 1993 .

[38]  P. C. Huang,et al.  The complete nucleotide sequence of the Crossostoma lacustre mitochondrial genome: conservation and variations among vertebrates. , 1992, Nucleic acids research.

[39]  L. R. Richardson,et al.  Genetic studies in marine fishes. IV. An analysis of population structure in the red drum (Sciaenops ocellatus) using mitochondrial DNA , 1991 .

[40]  J. Gold,et al.  Genetic studies in marine fishes , 1991 .

[41]  A. P. Martin,et al.  Accuracy of estimating genetic distance between species from short sequences of mitochondrial DNA. , 1990, Molecular biology and evolution.

[42]  Edward O. Murdy,et al.  A taxonomic revision and cladistic analysis of the oxudercine gobies (Gobiidae : Oxudercinae) , 1989 .

[43]  J. Hixson,et al.  Both the conserved stem-loop and divergent 5'-flanking sequences are required for initiation at the human mitochondrial origin of light-strand DNA replication. , 1986, The Journal of biological chemistry.

[44]  Julio Montoya,et al.  tRNA punctuation model of RNA processing in human mitochondria , 1981, Nature.

[45]  B. Velimirov.  Formation and potential trophic significance of marine foam near kelp beds in the benguela upwelling system , 1980 .

[46]  J. S. Nelson,et al.  Fishes of the world. , 1978 .

[47]  G. Tian.  STUDY ON SPECIES VALIDATION FOR SYNECHOGOBIUS HASTA , 2010 .

[48]  H. Larson,et al.  An updated checklist of the gobioid fishes of Singapore , 2008 .

[49]  H. Mewes,et al.  BIOINFORMATICS APPLICATIONS NOTE , 2004 .

[50]  J. Inoue,et al.  Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences. , 2003, Molecular phylogenetics and evolution.

[51]  G. Shadel,et al.  Mitochondrial DNA maintenance in vertebrates. , 1997, Annual review of biochemistry.

[52]  A. Gill,et al.  Phylogenetic relationships of eleotridid fishes (Perciformes: Gobioidei) , 1993 .

[53]  D. A. Clayton,et al.  Replication and transcription of vertebrate mitochondrial DNA. , 1991, Annual review of cell biology.

[54]  Evolution of mitochondrial DNA in fishes , 2022 .