Genome-Wide Association Study and Transcriptome of Japanese Patients with Developmental Dysplasia of the Hip Demonstrates an Association with the Ferroptosis Signaling Pathway

This study examined the association between developmental dysplasia of the hip (DDH) and disease-associated loci in a Japanese cohort. A genome-wide association study (GWAS) of 238 Japanese patients with DDH and 2044 healthy individuals was performed. As a replicate, GWAS was also conducted on the UK Biobank data with 3315 cases and matched 74,038 controls. Gene set enrichment analyses (GSEAs) of both the genetics and transcriptome of DDH were performed. Transcriptome analysis of cartilage specimens from DDH-associated osteoarthritis and femoral neck fractures was performed as a control. Most of the lead variants were very low-frequency ones in the UK, and variants in the Japanese GWAS could not be replicated with the UK GWAS. We assigned DDH-related candidate variants to 42 and 81 genes from the Japanese and UK GWASs, respectively, using functional mapping and annotation. GSEA of gene ontology, disease ontology, and canonical pathways identified the most enriched pathway to be the ferroptosis signaling pathway, both in the Japanese gene set as well as the Japanese and UK merged set. Transcriptome GSEA also identified significant downregulation of genes in the ferroptosis signaling pathway. Thus, the ferroptosis signaling pathway may be associated with the pathogenic mechanism of DDH.

[1]  Z. Xiang,et al.  Identification of FDFT1 as a potential biomarker associated with ferroptosis in ccRCC , 2022, Cancer medicine.

[2]  Ke Xu,et al.  The RNA-binding protein SND1 promotes the degradation of GPX4 by destabilizing the HSPA5 mRNA and suppressing HSPA5 expression, promoting ferroptosis in osteoarthritis chondrocytes , 2022, Inflammation Research.

[3]  Genchun Wang,et al.  Deferoxamine Alleviates Osteoarthritis by Inhibiting Chondrocyte Ferroptosis and Activating the Nrf2 Pathway , 2022, Frontiers in Pharmacology.

[4]  Jie Fan,et al.  Novel Immune-Related Ferroptosis Signature in Esophageal Cancer: An Informatics Exploration of Biological Processes Related to the TMEM161B-AS1/hsa-miR-27a-3p/GCH1 Regulatory Network , 2022, Frontiers in Genetics.

[5]  Qian Hu,et al.  Blockade of GCH1/BH4 Axis Activates Ferritinophagy to Mitigate the Resistance of Colorectal Cancer to Erastin-Induced Ferroptosis , 2022, Frontiers in Cell and Developmental Biology.

[6]  Yang-Yang Bian,et al.  Targeting Cell Death: Pyroptosis, Ferroptosis, Apoptosis and Necroptosis in Osteoarthritis , 2022, Frontiers in Cell and Developmental Biology.

[7]  E. Itoi,et al.  Mid-term results of a new femoral prosthesis using Ti-Nb-Sn alloy with low Young’s modulus , 2021, BMC Musculoskeletal Disorders.

[8]  L. Danišovič,et al.  Association Analysis of GDF5 and Contributing Factors in Developmental Dysplasia of the Hip in Infants. , 2021, Ortopedia Traumatologia Rehabilitacja.

[9]  Y. Yi,et al.  D‐mannose alleviates osteoarthritis progression by inhibiting chondrocyte ferroptosis in a HIF‐2α‐dependent manner , 2021, Cell proliferation.

[10]  L. Danišovič,et al.  Genetic Study of IL6, GDF5 and PAPPA2 in Association with Developmental Dysplasia of the Hip , 2021, Genes.

[11]  Zhili Zheng,et al.  A generalized linear mixed model association tool for biobank-scale data , 2021, Nature Genetics.

[12]  P. Nakonezny,et al.  Health-related quality of life and anxiety associated with childhood intermittent exotropia before and after surgical correction , 2021, BMC Musculoskeletal Disorders.

[13]  Genchun Wang,et al.  Chondrocyte ferroptosis contribute to the progression of osteoarthritis , 2020, Journal of orthopaedic translation.

[14]  N. Masahashi,et al.  Acceleration of Fracture Healing in Mouse Tibiae Using Intramedullary Nails Composed of β-Type TiNbSn Alloy with Low Young's Modulus. , 2021, The Tohoku journal of experimental medicine.

[15]  D. Tang,et al.  Cathepsin B is a mediator of organelle-specific initiation of ferroptosis. , 2020, Biochemical and biophysical research communications.

[16]  P. Nakonezny,et al.  Pain catastrophizing, anxiety, and depression in hip pathology. , 2019, The bone & joint journal.

[17]  Y. Bossé,et al.  Benefits and limitations of genome-wide association studies , 2019, Nature Reviews Genetics.

[18]  Y. Maehara,et al.  POGLUT1, the putative effector gene driven by rs2293370 in primary biliary cholangitis susceptibility locus chromosome 3q13.33 , 2019, Scientific Reports.

[19]  J. Yasuda,et al.  A Genome-wide Association Study Identifying RAP1A as a Novel Susceptibility Gene for Crohn’s Disease in Japanese Individuals , 2018, Journal of Crohn's & colitis.

[20]  E. Tsiridis,et al.  Genetic Predisposition to Developmental Dysplasia of the Hip. , 2019, The Journal of arthroplasty.

[21]  M. Nagasaki,et al.  Clinical and genetic risk factors for decreased bone mineral density in Japanese patients with inflammatory bowel disease , 2018, Journal of gastroenterology and hepatology.

[22]  E. Itoi,et al.  Effects of intramedullary nails composed of a new β-type Ti-Nb-Sn alloy with low Young's modulus on fracture healing in mouse tibiae. , 2018, Journal of biomedical materials research. Part B, Applied biomaterials.

[23]  J. Bonifacino,et al.  A Neurodevelopmental Disorder Caused by Mutations in the VPS51 Subunit of the GARP and EARP Complexes , 2018, bioRxiv.

[24]  E. Itoi,et al.  A whole-genome transcriptome analysis of articular chondrocytes in secondary osteoarthritis of the hip , 2018, PloS one.

[25]  E. Zeggini,et al.  Genome-wide association study of developmental dysplasia of the hip identifies an association with GDF5 , 2018, Communications Biology.

[26]  T. Nakazawa,et al.  Genetic analysis of Japanese primary open-angle glaucoma patients and clinical characterization of risk alleles near CDKN2B-AS1, SIX6 and GAS7 , 2017, PloS one.

[27]  D. Posthuma,et al.  Functional mapping and annotation of genetic associations with FUMA , 2017, Nature Communications.

[28]  J. Parvizi,et al.  A murine model for developmental dysplasia of the hip: ablation of CX3CR1 affects acetabular morphology and gait , 2017, Journal of Translational Medicine.

[29]  Lili Wang,et al.  CX3CR1 polymorphisms associated with an increased risk of developmental dysplasia of the hip in human , 2017, Journal of orthopaedic research : official publication of the Orthopaedic Research Society.

[30]  T. Liou,et al.  Association between psychiatric disorders and osteoarthritis: a nationwide longitudinal population-based study , 2016, Medicine.

[31]  Gabor T. Marth,et al.  A global reference for human genetic variation , 2015, Nature.

[32]  Kengo Kinoshita,et al.  Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals , 2015, Nature Communications.

[33]  J. Yasuda,et al.  Japonica array: improved genotype imputation by designing a population-specific SNP array with 1070 Japanese individuals , 2015, Journal of Human Genetics.

[34]  E. Itoi,et al.  Impaired Fracture Healing Caused by Deficiency of the Immunoreceptor Adaptor Protein DAP12 , 2015, PloS one.

[35]  Hongbing Shen,et al.  A Common Variant Of Ubiquinol-Cytochrome c Reductase Complex Is Associated with DDH , 2015, PloS one.

[36]  J. Parvizi,et al.  Linkage mapping and whole exome sequencing identify a shared variant in CX3CR1 in a large multi-generation family. , 2014, The Journal of arthroplasty.

[37]  Elaine N. Skopelja,et al.  The Epidemiology and Demographics of Hip Dysplasia , 2011, ISRN orthopedics.

[38]  I. Owan,et al.  Osteoarthritis hip joints in Japan: involvement of acetabular dysplasia , 2011, Journal of orthopaedic science : official journal of the Japanese Orthopaedic Association.

[39]  P. Visscher,et al.  GCTA: a tool for genome-wide complex trait analysis. , 2011, American journal of human genetics.

[40]  C. Férec,et al.  Evidence of association between GDF5 polymorphisms and congenital dislocation of the hip in a Caucasian population. , 2010, Osteoarthritis and cartilage.

[41]  I. Owan,et al.  Multiinstitutional epidemiological study regarding osteoarthritis of the hip in Japan , 2010, Journal of orthopaedic science : official journal of the Japanese Orthopaedic Association.

[42]  M. Devoto,et al.  The Otto Aufranc Award: Identification of a 4 Mb Region on Chromosome 17q21 Linked to Developmental Dysplasia of the Hip in One 18-member, Multigeneration Family , 2010, Clinical orthopaedics and related research.

[43]  J. Callaghan,et al.  Survivorship of a Charnley total hip arthroplasty. A concise follow-up, at a minimum of thirty-five years, of previous reports. , 2009, The Journal of bone and joint surgery. American volume.

[44]  Jing Chen,et al.  ToppGene Suite for gene list enrichment analysis and candidate gene prioritization , 2009, Nucleic Acids Res..

[45]  D. Shi,et al.  Association of a single nucleotide polymorphism in growth differentiate factor 5 with congenital dysplasia of the hip: a case-control study , 2008, Arthritis research & therapy.

[46]  K. Miyazono,et al.  Mechanisms for Asporin Function and Regulation in Articular Cartilage* , 2007, Journal of Biological Chemistry.

[47]  H. Masuya,et al.  A novel dominant-negative mutation in Gdf5 generated by ENU mutagenesis impairs joint formation and causes osteoarthritis in mice. , 2007, Human molecular genetics.

[48]  S. Snelling,et al.  An SNP in the 5′-UTR of GDF5 is associated with osteoarthritis susceptibility in Europeans and with in vivo differences in allelic expression in articular cartilage , 2007 .

[49]  Tim D Spector,et al.  The UK Adult Twin Registry (TwinsUK) , 2006, Twin Research and Human Genetics.

[50]  S. Ikegawa,et al.  Familial osteoarthritis of the hip joint associated with acetabular dysplasia maps to chromosome 13q. , 2006, American journal of human genetics.

[51]  J. Sinsheimer,et al.  The CALM1 core promoter polymorphism is not associated with hip osteoarthritis in a United Kingdom Caucasian population. , 2006, Osteoarthritis and cartilage.

[52]  Kozo Nakamura,et al.  A functional single nucleotide polymorphism in the core promoter region of CALM1 is associated with hip osteoarthritis in Japanese. , 2005, Human molecular genetics.

[53]  J. Ott,et al.  Complement Factor H Polymorphism in Age-Related Macular Degeneration , 2005, Science.

[54]  B. Koes,et al.  Acetabular dysplasia predicts incident osteoarthritis of the hip: the Rotterdam study. , 2005, Arthritis and rheumatism.

[55]  S. Jacobsen,et al.  Hip dysplasia: a significant risk factor for the development of hip osteoarthritis. A cross-sectional survey. , 2005, Rheumatology.

[56]  J. Callaghan,et al.  Charnley Total Hip Arthroplasty with Use of Improved Cementing Techniques: A Minimum Twenty-Year Follow-up Study , 2001, The Journal of bone and joint surgery. American volume.

[57]  Koji Inoue,et al.  Prevalence of hip osteoarthritis and acetabular dysplasia in french and japanese adults. , 2000, Rheumatology.

[58]  C. Cooper,et al.  Acetabular dysplasia and hip osteoarthritis in Britain and Japan. , 1998, British journal of rheumatology.

[59]  G. Wiberg Shelf operation in congenital dysplasia of the acetabulum and in subluxation and dislocation of the hip. , 1953, The Journal of bone and joint surgery. American volume.