The regulatory network of B-cell differentiation: a focused view of early B-cell factor 1 function

During the last decades, many studies have investigated the transcriptional and epigenetic regulation of lineage decision in the hematopoietic system. These efforts led to a model in which extrinsic signals and intrinsic cues establish a permissive chromatin context upon which a regulatory network of transcription factors and epigenetic modifiers act to guide the differentiation of hematopoietic lineages. These networks include lineage‐specific factors that further modify the epigenetic landscape and promote the generation of specific cell types. The process of B lymphopoiesis requires a set of transcription factors, including Ikaros, PU.1, E2A, and FoxO1 to ‘prime’ cis‐regulatory regions for subsequent activation by the B‐lineage‐specific transcription factors EBF1 and Pax‐5. The expression of EBF1 is initiated by the combined action of E2A and FoxO1, and it is further enhanced and maintained by several positive feedback loops that include Pax‐5 and IL‐7 signaling. EBF1 acts in concert with Ikaros, PU.1, Runx1, E2A, FoxO1, and Pax‐5 to establish the B cell‐specific transcription profile. EBF1 and Pax‐5 also collaborate to repress alternative cell fates and lock cells into the B‐lineage fate. In addition to the functions of EBF1 in establishing and maintaining B‐cell identity, EBF1 is required to coordinate differentiation with cell proliferation and survival.

[1]  M. Sigvardsson,et al.  Critical Role for Ebf1 and Ebf2 in the Adipogenic Transcriptional Cascade , 2006, Molecular and Cellular Biology.

[2]  E. Rothenberg Transcriptional control of early T and B cell developmental choices. , 2014, Annual review of immunology.

[3]  A. Diefenbach,et al.  Transcriptional control of innate lymphocyte fate decisions. , 2012, Current opinion in immunology.

[4]  D. Sahoo,et al.  Ly6d marks the earliest stage of B-cell specification and identifies the branchpoint between B-cell and T-cell development. , 2009, Genes & development.

[5]  Hyun-Jun Lee,et al.  PU.1 regulates expression of the interleukin-7 receptor in lymphoid progenitors. , 2002, Immunity.

[6]  R. Y. Tsai,et al.  Identification of DNA Recognition Sequences and Protein Interaction Domains of the Multiple-Zn-Finger Protein Roaz , 1998, Molecular and Cellular Biology.

[7]  Stephen L. Nutt,et al.  Commitment to the B-lymphoid lineage depends on the transcription factor Pax5 , 1999, Nature.

[8]  P. Cramer,et al.  A firm hand on NF?B: structures of the I?BaNF?B complex , 1999 .

[9]  H. Qian,et al.  Single-cell analysis of early B-lymphocyte development suggests independent regulation of lineage specification and commitment in vivo , 2012, Proceedings of the National Academy of Sciences.

[10]  I. Bernstein,et al.  E47 Controls the Developmental Integrity and Cell Cycle Quiescence of Multipotential Hematopoietic Progenitors1 , 2008, The Journal of Immunology.

[11]  K. Akashi,et al.  Reciprocal activation of GATA-1 and PU.1 marks initial specification of hematopoietic stem cells into myeloerythroid and myelolymphoid lineages. , 2007, Cell stem cell.

[12]  E. Liu,et al.  Transcription factor Ebf1 regulates differentiation stage-specific signaling, proliferation, and survival of B cells. , 2012, Genes & development.

[13]  R. Y. Tsai,et al.  The Characterization of the Olf-1/EBF-Like HLH Transcription Factor Family: Implications in Olfactory Gene Regulation and Neuronal Development , 1997, The Journal of Neuroscience.

[14]  T. Ikawa,et al.  Runx1–Cbfβ facilitates early B lymphocyte development by regulating expression of Ebf1 , 2012, The Journal of experimental medicine.

[15]  J. Hagman,et al.  Ebf1-mediated down-regulation of Id2 and Id3 is essential for specification of the B cell lineage , 2009, Proceedings of the National Academy of Sciences.

[16]  C. Murre,et al.  Distinct roles for E12 and E47 in B cell specification and the sequential rearrangement of immunoglobulin light chain loci , 2009, The Journal of experimental medicine.

[17]  T. Möröy,et al.  Transcription factor miz-1 is required to regulate interleukin-7 receptor signaling at early commitment stages of B cell differentiation. , 2010, Immunity.

[18]  R. Grosschedl,et al.  Failure of B-cell differentiation in mice lacking the transcription factor EBF , 1995, Nature.

[19]  Rosana Pelayo,et al.  Evolving views on the genealogy of B cells , 2008, Nature Reviews Immunology.

[20]  N. Copeland,et al.  Evi3, a common retroviral integration site in murine B-cell lymphoma, encodes an EBFAZ-related Krüppel-like zinc finger protein. , 2003, Blood.

[21]  R. Y. Tsai,et al.  Cloning and Functional Characterization of Roaz, a Zinc Finger Protein that Interacts with O/E-1 to Regulate Gene Expression: Implications for Olfactory Neuronal Development , 1997, The Journal of Neuroscience.

[22]  Ignacio A. Demarco,et al.  Regulation of B cell fate commitment and immunoglobulin heavy-chain gene rearrangements by Ikaros , 2008, Nature Immunology.

[23]  I. Weissman,et al.  A clonogenic common myeloid progenitor that gives rise to all myeloid lineages , 2000, Nature.

[24]  M. Ross,et al.  Meta-analysis of IDH-mutant cancers identifies EBF1 as an interaction partner for TET2 , 2013, Nature Communications.

[25]  Jae U. Jung,et al.  Control of B cell development by the histone H2A deubiquitinase MYSM1. , 2011, Immunity.

[26]  M. Greaves,et al.  Multilineage gene expression precedes commitment in the hemopoietic system. , 1997, Genes & development.

[27]  R. Grosschedl,et al.  EBF contains a novel zinc coordination motif and multiple dimerization and transcriptional activation domains. , 1995, The EMBO journal.

[28]  B. Snel,et al.  Domains in plexins: links to integrins and transcription factors. , 1999, Trends in biochemical sciences.

[29]  Rudolf Grosschedl,et al.  Structure of an Ebf1:DNA complex reveals unusual DNA recognition and structural homology with Rel proteins. , 2010, Genes & development.

[30]  D. Tenen,et al.  The macrophage transcription factor PU.1 directs tissue-specific expression of the macrophage colony-stimulating factor receptor , 1993, Molecular and cellular biology.

[31]  A. Rolink,et al.  Molecular mechanisms guiding late stages of B‐cell development , 2004, Immunological reviews.

[32]  Elinore M Mercer,et al.  Multilineage priming of enhancer repertoires precedes commitment to the B and myeloid cell lineages in hematopoietic progenitors. , 2011, Immunity.

[33]  J. Hagman,et al.  Activation of the Early B-Cell-Specific mb-1 (Ig-α) Gene by Pax-5 Is Dependent on an Unmethylated Ets Binding Site , 2003, Molecular and Cellular Biology.

[34]  R. Grosschedl,et al.  Coordinate regulation of B cell differentiation by the transcription factors EBF and E2A. , 1999, Immunity.

[35]  R. Hardy,et al.  B cell development pathways. , 2001, Annual review of immunology.

[36]  E. Bertolino,et al.  Transcription factor EBF restricts alternative lineage options and promotes B cell fate commitment independently of Pax5 , 2008, Nature Immunology.

[37]  J. Hagman,et al.  Early B-cell factor 'pioneers' the way for B-cell development. , 2005, Trends in immunology.

[38]  M. Busslinger,et al.  Stepwise activation of enhancer and promoter regions of the B cell commitment gene Pax5 in early lymphopoiesis. , 2009, Immunity.

[39]  J. Hagman,et al.  B lymphocyte lineage specification, commitment and epigenetic control of transcription by early B cell factor 1. , 2012, Current topics in microbiology and immunology.

[40]  A. Hata,et al.  Early hematopoietic zinc finger protein (EHZF), the human homolog to mouse Evi3, is highly expressed in primitive human hematopoietic cells. , 2004, Blood.

[41]  E. Rothenberg,et al.  Ikaros represses and activates PU.1 cell-type-specifically through the multifunctional Sfpi1 URE and a myeloid specific enhancer , 2012, Oncogene.

[42]  R. Grosschedl,et al.  Role of transcription factors in commitment and differentiation of early B lymphoid cells. , 2006, Seminars in immunology.

[43]  M. Merkenschlager Ikaros in immune receptor signaling, lymphocyte differentiation, and function , 2010, FEBS letters.

[44]  Li Wu,et al.  Surprising new roles for PU.1 in the adaptive immune response , 2010, Immunological reviews.

[45]  Elin Axelsson,et al.  Essential role of EBF1 in the generation and function of distinct mature B cell types , 2012, The Journal of experimental medicine.

[46]  S. Carotta,et al.  Critical roles for c-Myb in hematopoietic progenitor cells. , 2008, Seminars in immunology.

[47]  M. Sigvardsson,et al.  EBF and E47 collaborate to induce expression of the endogenous immunoglobulin surrogate light chain genes. , 1997, Immunity.

[48]  Carl O. Pabo,et al.  Crystal structure of MyoD bHLH domain-DNA complex: Perspectives on DNA recognition and implications for transcriptional activation , 1994, Cell.

[49]  M. Busslinger,et al.  Essential functions of Pax5 (BSAP) in pro-B cell development: difference between fetal and adult B lymphopoiesis and reduced V-to-DJ recombination at the IgH locus. , 1997, Genes & development.

[50]  M. Kondo,et al.  IL-7 receptor signaling is necessary for stage transition in adult B cell development through up-regulation of EBF , 2005, The Journal of experimental medicine.

[51]  W. Ouwehand,et al.  Combinatorial transcriptional control in blood stem/progenitor cells: genome-wide analysis of ten major transcriptional regulators. , 2010, Cell stem cell.

[52]  S. Jacobsen,et al.  Transcriptional Repression of Gata3 Is Essential for Early B Cell Commitment , 2013, Immunity.

[53]  R. Grosschedl,et al.  Purification of early-B-cell factor and characterization of its DNA-binding specificity , 1993, Molecular and cellular biology.

[54]  Elinore M Mercer,et al.  The transcription factors E2A and HEB act in concert to induce the expression of FOXO1 in the common lymphoid progenitor , 2011, Proceedings of the National Academy of Sciences.

[55]  S. Harrison,et al.  The structure of the NF-kappa B p50:DNA-complex: a starting point for analyzing the Rel family. , 1995, FEBS letters.

[56]  D. Schatz,et al.  Pax5 is required for recombination of transcribed, acetylated, 5' IgH V gene segments. , 2003, Genes & development.

[57]  M. Sigvardsson,et al.  Early B cell factor is an activator of the B lymphoid kinase promoter in early B cell development. , 1999, Journal of immunology.

[58]  C. Turck,et al.  Cloning and functional characterization of early B-cell factor, a regulator of lymphocyte-specific gene expression. , 1993, Genes & development.

[59]  S. Bilke,et al.  Early B-Cell Factor, E2A, and Pax-5 Cooperate To Activate the Early B Cell-Specific mb-1 Promoter , 2002, Molecular and Cellular Biology.

[60]  H. Erdjument-Bromage,et al.  An Ikaros-Containing Chromatin-Remodeling Complex in Adult-Type Erythroid Cells , 2000, Molecular and Cellular Biology.

[61]  R. Hardy,et al.  Commitment to the B Lymphoid Lineage Occurs before DH-JH Recombination , 1999, The Journal of experimental medicine.

[62]  M. Busslinger,et al.  Conversion of mature B cells into T cells by dedifferentiation to uncommitted progenitors , 2007, Nature.

[63]  J. Hagman,et al.  From hematopoietic progenitors to B cells: mechanisms of lineage restriction and commitment. , 2010, Current opinion in immunology.

[64]  C. Cotta,et al.  Enforced expression of EBF in hematopoietic stem cells restricts lymphopoiesis to the B cell lineage , 2003, The EMBO journal.

[65]  S. Harrison,et al.  The structure of the NF‐κB p50:DNA‐complex a starting point for analyzing the Rel family , 1995 .

[66]  M. Sigvardsson,et al.  The B29 (Immunoglobulin β-Chain) Gene Is a Genetic Target for Early B-Cell Factor , 1999, Molecular and Cellular Biology.

[67]  A. Iavarone,et al.  The ID proteins: master regulators of cancer stem cells and tumour aggressiveness , 2014, Nature Reviews Cancer.

[68]  W. Garrard,et al.  A Multifunctional Element in the Mouse Igκ Locus That Specifies Repertoire and Ig Loci Subnuclear Location , 2011, The Journal of Immunology.

[69]  H. Singh,et al.  Regulation of B lymphocyte and macrophage development by graded expression of PU.1. , 2000, Science.

[70]  Tarjei S Mikkelsen,et al.  Early B-cell Factor-1 (EBF1) Is a Key Regulator of Metabolic and Inflammatory Signaling Pathways in Mature Adipocytes* , 2013, The Journal of Biological Chemistry.

[71]  H. Weintraub,et al.  The helix-loop-helix gene E2A is required for B cell formation , 1994, Cell.

[72]  Elinore M Mercer,et al.  E2A proteins maintain the hematopoietic stem cell pool and promote the maturation of myelolymphoid and myeloerythroid progenitors , 2009, Proceedings of the National Academy of Sciences.

[73]  A. Feeney,et al.  Compound haploinsufficiencies of Ebf1 and Runx1 genes impede B cell lineage progression , 2010, Proceedings of the National Academy of Sciences.

[74]  Ian Krop,et al.  E2A proteins are required for proper B cell development and initiation of immunoglobulin gene rearrangements , 1994, Cell.

[75]  R. Grosschedl,et al.  A novel lineage‐specific nuclear factor regulates mb‐1 gene transcription at the early stages of B cell differentiation. , 1991, The EMBO journal.

[76]  S. Ng,et al.  Early hematopoietic lineage restrictions directed by Ikaros , 2006, Nature Immunology.

[77]  Rudolf Grosschedl,et al.  Transcription control of early B cell differentiation. , 2010, Current opinion in immunology.

[78]  M. Schebesta,et al.  Pax5 promotes B lymphopoiesis and blocks T cell development by repressing Notch1. , 2002, Immunity.

[79]  A. Feeney,et al.  Targeted disruption of the PU.1 gene results in multiple hematopoietic abnormalities. , 1996, The EMBO journal.

[80]  K. Anderson,et al.  B-lineage commitment prior to surface expression of B220 and CD19 on hematopoietic progenitor cells. , 2008, Blood.

[81]  C. Panaroni,et al.  Interactions Between B Lymphocytes and the Osteoblast Lineage in Bone Marrow , 2013, Calcified Tissue International.

[82]  M. Busslinger,et al.  Gene repression by Pax5 in B cells is essential for blood cell homeostasis and is reversed in plasma cells. , 2006, Immunity.

[83]  R. Kingston,et al.  Ikaros DNA-binding proteins direct formation of chromatin remodeling complexes in lymphocytes. , 1999, Immunity.

[84]  Michael M. Wang,et al.  Molecular cloning of the olfactory neuronal transcription factor Olf-1 by genetic selection in yeast , 1993, Nature.

[85]  E. Pujadas,et al.  A recurrent network involving the transcription factors PU.1 and Gfi1 orchestrates innate and adaptive immune cell fates. , 2009, Immunity.

[86]  R. Hardy,et al.  The protean nature of cells in the B lymphocyte lineage. , 2007, Immunity.

[87]  A. G. Betz,et al.  Cloning of a Novel Olf-1/EBF-like Gene, O/E-4, by Degenerate Oligo-based Direct Selection , 2002, Molecular and Cellular Neuroscience.

[88]  J. Zuber,et al.  Stage-specific control of early B cell development by the transcription factor Ikaros , 2014, Nature Immunology.

[89]  R. Gisler,et al.  Cloning and Characterization of a Promoter Flanking the Early B Cell Factor (EBF) Gene Indicates Roles for E-Proteins and Autoregulation in the Control of EBF Expression1 , 2002, The Journal of Immunology.

[90]  D. Hilton,et al.  Critical roles for c-Myb in lymphoid priming and early B-cell development. , 2010, Blood.

[91]  Rudolf Grosschedl,et al.  Transcription factor EBF1 is essential for the maintenance of B cell identity and prevention of alternative fates in committed cells , 2013, Nature Immunology.

[92]  A. Vincent,et al.  The COE – Collier/Olf1/EBF – transcription factors: structural conservation and diversity of developmental functions , 2001, Mechanisms of Development.

[93]  J. Hagman,et al.  Opposing effects of SWI/SNF and Mi-2/NuRD chromatin remodeling complexes on epigenetic reprogramming by EBF and Pax5 , 2009, Proceedings of the National Academy of Sciences.

[94]  E. Wagner,et al.  Complete block of early B cell differentiation and altered patterning of the posterior midbrain in mice lacking Pax5 BSAP , 1994, Cell.

[95]  M. Kondo,et al.  Asymmetrical lymphoid and myeloid lineage commitment in multipotent hematopoietic progenitors , 2006, The Journal of experimental medicine.

[96]  Lina A. Thoren,et al.  Identification of Flt3+ Lympho-Myeloid Stem Cells Lacking Erythro-Megakaryocytic Potential A Revised Road Map for Adult Blood Lineage Commitment , 2005, Cell.

[97]  C. Glass,et al.  Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. , 2010, Molecular cell.

[98]  V. Kouskoff,et al.  Early chromatin unfolding by RUNX1: a molecular explanation for differential requirements during specification versus maintenance of the hematopoietic gene expression program. , 2009, Blood.

[99]  Eric Vivier,et al.  Innate lymphoid cells — a proposal for uniform nomenclature , 2013, Nature Reviews Immunology.

[100]  R. Akeson,et al.  Olf-1-binding site: characterization of an olfactory neuron-specific promoter motif , 1993, Molecular and cellular biology.

[101]  M. Sigvardsson,et al.  The EBF/Olf/Collier Family of Transcription Factors: Regulators of Differentiation in Cells Originating from All Three Embryonal Germ Layers , 2002, Molecular and Cellular Biology.

[102]  S. Shinton,et al.  Early B cell factor cooperates with Runx1 and mediates epigenetic changes associated with mb-1 transcription , 2004, Nature Immunology.

[103]  R. Månsson,et al.  Single-cell analysis of the common lymphoid progenitor compartment reveals functional and molecular heterogeneity. , 2010, Blood.

[104]  J. Hagman,et al.  MBD2 and Multiple Domains of CHD4 Are Required for Transcriptional Repression by Mi-2/NuRD Complexes , 2012, Molecular and Cellular Biology.

[105]  Raja Jothi,et al.  Genome-wide analyses of transcription factor GATA3-mediated gene regulation in distinct T cell types. , 2011, Immunity.

[106]  I. Weissman,et al.  Identification of Clonogenic Common Lymphoid Progenitors in Mouse Bone Marrow , 1997, Cell.

[107]  C. Murre,et al.  Induction of Early B Cell Factor (EBF) and Multiple B Lineage Genes by the Basic Helix-Loop-Helix Transcription Factor E12 , 1998, The Journal of experimental medicine.

[108]  Esteban Ballestar,et al.  A robust and highly efficient immune cell reprogramming system. , 2009, Cell stem cell.

[109]  R. Månsson,et al.  E2A proteins promote development of lymphoid-primed multipotent progenitors. , 2008, Immunity.

[110]  Salam A. Assi,et al.  RUNX1 reshapes the epigenetic landscape at the onset of haematopoiesis , 2012, The EMBO journal.

[111]  R. Gisler,et al.  A human early B-cell factor-like protein participates in the regulation of the human CD19 promoter. , 1999, Molecular immunology.

[112]  Rudolf Grosschedl,et al.  Early B cell factor 1 regulates B cell gene networks by activation, repression, and transcription- independent poising of chromatin. , 2010, Immunity.

[113]  E. Kremmer,et al.  Aberrant ZNF423 impedes B cell differentiation and is linked to adverse outcome of ETV6-RUNX1 negative B precursor acute lymphoblastic leukemia , 2013, The Journal of experimental medicine.

[114]  R. Seong,et al.  The SWI/SNF-like BAF Complex Is Essential for Early B Cell Development , 2012, The Journal of Immunology.

[115]  C. Glass,et al.  Positive intergenic feedback circuitry, involving EBF1 and FOXO1, orchestrates B-cell fate , 2012, Proceedings of the National Academy of Sciences.

[116]  S. Nutt,et al.  The transcriptional regulation of B cell lineage commitment. , 2007, Immunity.

[117]  M. Sigvardsson Overlapping Expression of Early B-Cell Factor and Basic Helix-Loop-Helix Proteins as a Mechanism To Dictate B-Lineage-Specific Activity of the λ5 Promoter , 2000, Molecular and Cellular Biology.

[118]  B. Kee,et al.  Early B Cell Factor Promotes B Lymphopoiesis with Reduced Interleukin 7 Responsiveness in the Absence of E2A , 2004, The Journal of experimental medicine.

[119]  Takuro Nakamura,et al.  Bcl11a is essential for normal lymphoid development , 2003, Nature Immunology.

[120]  J. Hagman,et al.  The 'zinc knuckle' motif of Early B cell Factor is required for transcriptional activation of B cell-specific genes. , 2008, Molecular immunology.

[121]  R. Baron,et al.  Regulation of Early Adipose Commitment by Zfp521 , 2012, PLoS biology.

[122]  M. Busslinger,et al.  Long-term in vivo reconstitution of T-cell development by Pax5-deficient B-cell progenitors , 1999, Nature.

[123]  Giovanni Morrone,et al.  Zinc finger protein 521 antagonizes early B-cell factor 1 and modulates the B-lymphoid differentiation of primary hematopoietic progenitors , 2011, Cell cycle.

[124]  S. Neben,et al.  Defects in Hemopoietic Stem Cell Activity in Ikaros Mutant Mice , 1999, The Journal of experimental medicine.

[125]  M. Busslinger,et al.  Distinct Promoters Mediate the Regulation of Ebf1 Gene Expression by Interleukin-7 and Pax5 , 2006, Molecular and Cellular Biology.

[126]  P. Kastner,et al.  Ikaros is absolutely required for pre-B cell differentiation by attenuating IL-7 signals , 2013, The Journal of experimental medicine.

[127]  E. Petretto,et al.  Genome-wide identification of Ikaros targets elucidates its contribution to mouse B-cell lineage specification and pre-B-cell differentiation. , 2013, Blood.

[128]  M. Sigvardsson,et al.  Load and lock: the molecular mechanisms of B‐lymphocyte commitment , 2010, Immunological reviews.

[129]  Trey Ideker,et al.  A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates the B cell fate , 2010, Nature Immunology.

[130]  M. Sigvardsson,et al.  Structural Determination of Functional Domains in Early B-cell Factor (EBF) Family of Transcription Factors Reveals Similarities to Rel DNA-binding Proteins and a Novel Dimerization Motif* , 2010, The Journal of Biological Chemistry.

[131]  David Bryder,et al.  EBF1 Is Essential for B-Lineage Priming and Establishment of a Transcription Factor Network in Common Lymphoid Progenitors1 , 2008, The Journal of Immunology.

[132]  Utpal Banerjee,et al.  The hematopoietic stem cell and its niche: a comparative view. , 2007, Genes & development.

[133]  R. DePinho,et al.  Distinct functions for the transcription factor Foxo1 at various stages of B cell differentiation , 2008, Nature Immunology.

[134]  P. Casali,et al.  DNA Lesions and Repair in Immunoglobulin Class Switch Recombination and Somatic Hypermutation , 2005, Annals of the New York Academy of Sciences.

[135]  C. Bonifer,et al.  Regulation of the Interleukin-7 Receptor α Promoter by the Ets Transcription Factors PU.1 and GA-binding Protein in Developing B Cells* , 2007, Journal of Biological Chemistry.

[136]  Harinder Singh,et al.  Assembling a gene regulatory network for specification of the B cell fate. , 2004, Developmental cell.

[137]  J. D. Engel,et al.  Expression of the transcription factor GATA‐3 is required for the development of the earliest T cell progenitors and correlates with stages of cellular proliferation in the thymus , 1999, European journal of immunology.

[138]  R. Gisler,et al.  The Human V-PreB Promoter Is a Target for Coordinated Activation by Early B Cell Factor and E471 , 2002, The Journal of Immunology.

[139]  P. Cramer,et al.  A firm hand on NFkappaB: structures of the IkappaBalpha-NFkappaB complex. , 1999, Structure.

[140]  Alejandro Chavez,et al.  A critical role for TCF-1 in T-lineage specification and differentiation , 2011, Nature.