Host ESCRT factors are recruited during chikungunya virus infection and are required for the intracellular viral replication cycle

Chikungunya fever is a re-emerging zoonotic disease caused by chikungunya virus (CHIKV), a member of the Alphavirus genus in the Togaviridae family. Only a few studies have reported on the host factors required for intracellular CHIKV trafficking. Here, we conducted an imaging-based siRNA screen to identify human host factors for intracellular trafficking that are involved in CHIKV infection, examined their interactions with CHIKV proteins, and investigated the contributions of these proteins to CHIKV infection. The results of the siRNA screen revealed that host endosomal sorting complexes required for transport (ESCRT) proteins are recruited during CHIKV infection. Co-immunoprecipitation analyses revealed that both structural and nonstructural CHIKV proteins interact with hepatocyte growth factor–regulated tyrosine kinase substrate (HGS), a component of the ESCRT-0 complex. We also observed that HGS co-localizes with the E2 protein of CHIKV and with dsRNA, a marker of the replicated CHIKV genome. Results from gene knockdown analyses indicated that, along with other ESCRT factors, HGS facilitates both genome replication and post-translational steps during CHIKV infection. Moreover, we show that ESCRT factors are also required for infections with other alphaviruses. We conclude that during CHIKV infection, several ESCRT factors are recruited via HGS and are involved in viral genome replication and post-translational processing of viral proteins.

[1]  D. Gubler,et al.  Alphaviruses , 2020, Oxford Textbook of Medicine.

[2]  Y. Jacob,et al.  MARCH8 Ubiquitinates the Hepatitis C Virus Nonstructural 2 Protein and Mediates Viral Envelopment , 2019, Cell reports.

[3]  M. Baker,et al.  Host and Viral Proteins Modulating Ebola and Marburg Virus Egress , 2019, Viruses.

[4]  M. Miura,et al.  ESCRT-III mediates budding across the inner nuclear membrane and regulates its integrity , 2018, Nature Communications.

[5]  Y. Orba,et al.  Identification of Compound‐B, a novel anti‐dengue virus agent targeting the non‐structural protein 4A , 2018, Antiviral research.

[6]  Roland Remenyi,et al.  Persistent Replication of a Chikungunya Virus Replicon in Human Cells Is Associated with Presence of Stable Cytoplasmic Granules Containing Nonstructural Protein 3 , 2018, Journal of Virology.

[7]  L. Coffey,et al.  ICTV Virus Taxonomy Profile: Togaviridae. , 2018, The Journal of general virology.

[8]  J. Tinevez,et al.  TIM-1 Ubiquitination Mediates Dengue Virus Entry. , 2018, Cell reports.

[9]  D. Fremont,et al.  Mxra8 is a receptor for multiple arthritogenic alphaviruses , 2018, Nature.

[10]  Leiliang Zhang,et al.  Key components of COPI and COPII machineries are required for chikungunya virus replication. , 2017, Biochemical and biophysical research communications.

[11]  Y. Orba,et al.  Discovery of a novel antiviral agent targeting the nonstructural protein 4 (nsP4) of chikungunya virus. , 2017, Virology.

[12]  Stanford Schor,et al.  Hepatitis C Virus Proteins Interact with the Endosomal Sorting Complex Required for Transport (ESCRT) Machinery via Ubiquitination To Facilitate Viral Envelopment , 2016, mBio.

[13]  Ryosuke Suzuki,et al.  Unique Requirement for ESCRT Factors in Flavivirus Particle Formation on the Endoplasmic Reticulum. , 2016, Cell reports.

[14]  Peter R. Braun,et al.  A human genome-wide loss-of-function screen identifies effective chikungunya antiviral drugs , 2016, Nature Communications.

[15]  Jyun-Yuan Huang,et al.  The Dual Role of an ESCRT-0 Component HGS in HBV Transcription and Naked Capsid Secretion , 2015, PLoS pathogens.

[16]  Marc Lecuit,et al.  Chikungunya virus pathogenesis: From bedside to bench. , 2015, Antiviral research.

[17]  R. Hardy,et al.  Alphavirus RNA synthesis and non-structural protein functions. , 2015, The Journal of general virology.

[18]  Scott C Weaver,et al.  Chikungunya: Evolutionary history and recent epidemic spread. , 2015, Antiviral research.

[19]  J. Smit,et al.  Early Events in Chikungunya Virus Infection—From Virus Cell Binding to Membrane Fusion , 2015, Viruses.

[20]  P. Ahlquist,et al.  Correction: Host ESCRT Proteins Are Required for Bromovirus RNA Replication Compartment Assembly and Function , 2015, PLoS pathogens.

[21]  A. Suhrbier,et al.  Monoclonal antibodies specific for the capsid protein of chikungunya virus suitable for multiple applications. , 2015, The Journal of general virology.

[22]  K. Ikuta,et al.  Monoclonal antibody targeting chikungunya virus envelope 1 protein inhibits virus release. , 2014, Virology.

[23]  P. D. Nagy,et al.  Noncanonical Role for the Host Vps4 AAA+ ATPase ESCRT Protein in the Formation of Tomato Bushy Stunt Virus Replicase , 2014, PLoS pathogens.

[24]  S. Cassadou,et al.  Chikungunya in the Americas , 2014, The Lancet.

[25]  A. Pyke,et al.  Neutralizing monoclonal antibodies to the E2 protein of chikungunya virus protects against disease in a mouse model. , 2013, Clinical immunology.

[26]  W. Sundquist,et al.  Virus budding and the ESCRT pathway. , 2013, Cell host & microbe.

[27]  Jagdish Rai,et al.  Chikungunya virus capsid protein contains nuclear import and export signals , 2013, Virology Journal.

[28]  J. Héraud,et al.  Dried-Blood Spots: A Cost-Effective Field Method for the Detection of Chikungunya Virus Circulation in Remote Areas , 2013, PLoS neglected tropical diseases.

[29]  J. Chu,et al.  Comparative analysis of the genome sequences and replication profiles of chikungunya virus isolates within the East, Central and South African (ECSA) lineage , 2013, Virology Journal.

[30]  M. Albert,et al.  Chikungunya Virus-associated Long-term Arthralgia: A 36-month Prospective Longitudinal Study , 2013, PLoS neglected tropical diseases.

[31]  Scott D Emr,et al.  The ESCRT pathway. , 2011, Developmental cell.

[32]  P. Desprès,et al.  Chikungunya Virus, Southeastern France , 2011, Emerging infectious diseases.

[33]  Tadaki Suzuki,et al.  Equine major histocompatibility complex class I molecules act as entry receptors that bind to equine herpesvirus-1 glycoprotein D , 2011, Genes to cells : devoted to molecular & cellular mechanisms.

[34]  J. Martin-Serrano,et al.  Multiple Interactions between the ESCRT Machinery and Arrestin-Related Proteins: Implications for PPXY-Dependent Budding , 2010, Journal of Virology.

[35]  F. Rey,et al.  Glycoprotein organization of Chikungunya virus particles revealed by X-ray crystallography , 2010, Nature.

[36]  Shui-Tein Chen,et al.  Association of Alix with late endosomal lysobisphosphatidic acid is important for dengue virus infection in human endothelial cells. , 2010, Journal of proteome research.

[37]  Yuliang Liu,et al.  Viral and host proteins that modulate filovirus budding. , 2010, Future virology.

[38]  S. Higgs,et al.  Endocytosis of Chikungunya Virus into Mammalian Cells: Role of Clathrin and Early Endosomal Compartments , 2010, PloS one.

[39]  Pirjo Spuul,et al.  Phosphatidylinositol 3-Kinase-, Actin-, and Microtubule-Dependent Transport of Semliki Forest Virus Replication Complexes from the Plasma Membrane to Modified Lysosomes , 2010, Journal of Virology.

[40]  S. Higgs,et al.  A VLP vaccine for epidemic Chikungunya virus protects non-human primates against infection , 2010, Nature Medicine.

[41]  P. D. Nagy,et al.  A Unique Role for the Host ESCRT Proteins in Replication of Tomato bushy stunt virus , 2009, PLoS pathogens.

[42]  I. Kurane,et al.  Chikungunya virus isolated from a returnee to Japan from Sri Lanka: isolation of two sub-strains with different characteristics. , 2009, The American journal of tropical medicine and hygiene.

[43]  S. Higgs,et al.  Replication cycle of chikungunya: a re-emerging arbovirus. , 2009, Virology.

[44]  C. Crump,et al.  Herpes Simplex Virus Type 1 Production Requires a Functional ESCRT-III Complex but Is Independent of TSG101 and ALIX Expression , 2009, Journal of Virology.

[45]  A. Michault,et al.  Persistent arthralgia associated with chikungunya virus: a study of 88 adult patients on reunion island. , 2008, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[46]  R. Romi,et al.  Infection with chikungunya virus in Italy: an outbreak in a temperate region , 2007, The Lancet.

[47]  J. Hurley,et al.  Beyond Tsg101: the role of Alix in 'ESCRTing' HIV-1 , 2007, Nature Reviews Microbiology.

[48]  P. Hanson,et al.  Ubiquitin Depletion and Dominant-Negative VPS4 Inhibit Rhabdovirus Budding without Affecting Alphavirus Budding , 2007, Journal of Virology.

[49]  C. Salata,et al.  Intracellular Trafficking and Maturation of Herpes Simplex Virus Type 1 gB and Virus Egress Require Functional Biogenesis of Multivesicular Bodies , 2007, Journal of Virology.

[50]  Alain Michault,et al.  Outbreak of chikungunya on Reunion Island: early clinical and laboratory features in 157 adult patients. , 2007, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[51]  C. Crump,et al.  Herpes Simplex Virus Type 1 Cytoplasmic Envelopment Requires Functional Vps4 , 2007, Journal of Virology.

[52]  M. Strobel,et al.  Chikungunya, an epidemic arbovirosis. , 2007, The Lancet. Infectious diseases.

[53]  R. Lanciotti,et al.  Chikungunya Virus in US Travelers Returning from India, 2006 , 2007, Emerging infectious diseases.

[54]  C. Tucker,et al.  Drought-associated chikungunya emergence along coastal East Africa. , 2007, The American journal of tropical medicine and hygiene.

[55]  H. Stenmark,et al.  Double-sided ubiquitin binding of Hrs-UIM in endosomal protein sorting , 2006, Nature Structural &Molecular Biology.

[56]  C. Hu,et al.  Association of Japanese encephalitis virus NS3 protein with microtubules and tumour susceptibility gene 101 (TSG101) protein. , 2003, The Journal of general virology.

[57]  R. Kuhn,et al.  Alphavirus Nucleocapsid Protein Contains a Putative Coiled Coil α-Helix Important for Core Assembly , 2001, Journal of Virology.

[58]  T. Kitamura,et al.  Plat-E: an efficient and stable system for transient packaging of retroviruses , 2000, Gene Therapy.

[59]  M. Komada,et al.  Hrs, a Tyrosine Kinase Substrate with a Conserved Double Zinc Finger Domain, Is Localized to the Cytoplasmic Surface of Early Endosomes* , 1997, The Journal of Biological Chemistry.

[60]  S. Schlesinger,et al.  Deletion analysis of the capsid protein of Sindbis virus: identification of the RNA binding region , 1993, Journal of virology.

[61]  A. Helenius,et al.  Alphavirus RNA replicase is located on the cytoplasmic surface of endosomes and lysosomes , 1988, The Journal of cell biology.

[62]  Curtis,et al.  Dissection of Semliki Forest virus glycoprotein delivery from the trans-Golgi network to the cell surface in permeabilized BHK cells. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[63]  G. Warren,et al.  Dissection of the Golgi complex. I. Monensin inhibits the transport of viral membrane proteins from medial to trans Golgi cisternae in baby hamster kidney cells infected with Semliki Forest virus , 1983, The Journal of cell biology.