The complete chloroplast genome sequence of a Korean indigenous ornamental plant Hydrangea serrata for. fertilis Nakai (Hydrangeaceae)

Abstract De novo assembly with whole genome sequencing data of Hydrangea serrata for. fertilis, a great ornamental landscape plant species worldwide, facilitated to generate the complete chloroplast genome sequence in this study. The complete sequence was a circular DNA molecule of 157 730 bp in length, containing the large single-copy (LSC) region of 86 789 bp, small single-copy (SSC) region of 18 711 bp and two inverted repeats (IRs) regions of 26 115 bp. The genome encoded 114 genes consisting of 80 protein-coding genes, 30 tRNA genes and four rRNA genes. Phylogenetic analysis with matK gene-coding sequences of 19 species in family Hydrangeaceae showed a close relationship of H. serrata for. fertilis Nakai with H. macrophylla.

[1]  S. Sung,et al.  The complete chloroplast genome sequence of Zanthoxylum piperitum , 2016, Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis.

[2]  Sang-Choon Lee,et al.  Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species , 2015, Scientific Reports.

[3]  Tae-Jin Yang,et al.  Comprehensive Survey of Genetic Diversity in Chloroplast Genomes and 45S nrDNAs within Panax ginseng Species , 2015, PloS one.

[4]  J. Y. Lee,et al.  Several Factors Affecting Seed Germination of Hydrangea petiolaris Siebold & Zucc. , 2014 .

[5]  Hong-Il Choi,et al.  Evidence of genome duplication revealed by sequence analysis of multi-loci expressed sequence tag–simple sequence repeat bands in Panax ginseng Meyer , 2014, Journal of ginseng research.

[6]  Koichiro Tamura,et al.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. , 2013, Molecular biology and evolution.

[7]  S. Wanke,et al.  Unraveling Extensive Paraphyly in the Genus Hydrangea s. l. with Implications for the Systematics of Tribe Hydrangeeae , 2010 .

[8]  N. Bassuk,et al.  Response of Five Hydrangea Species to Foliar Salt Spray , 2010 .

[9]  S. Reed,et al.  Genetic Diversity Estimates for the Genus Hydrangea and Development of a Molecular Key Based on SSR , 2006 .

[10]  S. Reed.  Flowering Performance of 21 Hydrangea macrophylla Cultivars , 2002 .

[11]  S. Brown,et al.  Genome size variation and species relationships in the genus Hydrangea , 2001, Theoretical and Applied Genetics.

[12]  S. Reed,et al.  Hydrangea macrophylla and serrata - Should we Lump 'em or Split 'em? , 2006 .

[13]  M. Flores-Vergara,et al.  A modified protocol for rapid DNA isolation from plant tissues using cetyltrimethylammonium bromide , 2006, Nature Protocols.

[14]  H. Mewes,et al.  BIOINFORMATICS APPLICATIONS NOTE , 2004 .

[15]  E. Mcclintock.  A monograph of the genus Hydrangea , 1957 .