Using large-scale Granger causality to study changes in brain network properties in the Clinically Isolated Syndrome (CIS) stage of multiple sclerosis

Clinically Isolated Syndrome (CIS) is often considered to be the first neurological episode associated with Multiple sclerosis (MS). At an early stage the inflammatory demyelination occurring in the CNS can manifest as a change in neuronal metabolism, with multiple asymptomatic white matter lesions detected in clinical MRI. Such damage may induce topological changes of brain networks, which can be captured by advanced functional MRI (fMRI) analysis techniques. We test this hypothesis by capturing the effective relationships of 90 brain regions, defined in the Automated Anatomic Labeling (AAL) atlas, using a large-scale Granger Causality (lsGC) framework. The resulting networks are then characterized using graph-theoretic measures that quantify various network topology properties at a global as well as at a local level. We study for differences in these properties in network graphs obtained for 18 subjects (10 male and 8 female, 9 with CIS and 9 healthy controls). Global network properties captured trending differences with modularity and clustering coefficient (p<0.1). Additionally, local network properties, such as local efficiency and the strength of connections, captured statistically significant (p<0.01) differences in some regions of the inferior frontal and parietal lobe. We conclude that multivariate analysis of fMRI time-series can reveal interesting information about changes occurring in the brain in early stages of MS.

[1]  David H. Miller,et al.  Clinically isolated syndromes , 2012, The Lancet Neurology.

[2]  Karl J. Friston,et al.  Dynamic causal modeling , 2010, Scholarpedia.

[3]  Anke Meyer-Bäse,et al.  Segmentation and classification of dynamic breast magnetic resonance image data , 2006, J. Electronic Imaging.

[4]  Karl J. Friston,et al.  Dynamic causal modelling , 2003, NeuroImage.

[5]  Anke Meyer-Bäse,et al.  Fully automated biomedical image segmentation by self-organized model adaptation , 2004, Neural Networks.

[6]  Axel Wismüller,et al.  Large-scale Granger causality analysis on resting-state functional MRI , 2016, SPIE Medical Imaging.

[7]  Axel Wismüller,et al.  Segmentation with neural networks , 2000 .

[8]  Axel Wismüller,et al.  Classification of interstitial lung disease patterns with topological texture features , 2010, Medical Imaging.

[9]  H. Ritter,et al.  The Deformable Feature Map — Adaptive Plasticity for Function Approximation , 1998 .

[10]  Li Qingyang,et al.  Towards Automated Analysis of Connectomes: The Configurable Pipeline for the Analysis of Connectomes (C-PAC) , 2013 .

[11]  Thomas Martinetz,et al.  Medical image compression using topology-preserving neural networks , 2005, Eng. Appl. Artif. Intell..

[12]  Anke Meyer-Baese,et al.  Model-free functional MRI analysis using cluster-based methods , 2003, SPIE Defense + Commercial Sensing.

[13]  Thomas Villmann,et al.  Exploratory Observation Machine (XOM) with Kullback-Leibler Divergence for Dimensionality Reduction and Visualization , 2010, ESANN.

[14]  T. Nattkemper,et al.  Breast MRI data analysis by LLE , 2004, 2004 IEEE International Joint Conference on Neural Networks (IEEE Cat. No.04CH37541).

[15]  D. Louis Collins,et al.  Application of Information Technology: A Four-Dimensional Probabilistic Atlas of the Human Brain , 2001, J. Am. Medical Informatics Assoc..

[16]  Helge J. Ritter,et al.  The deformable feature map - a novel neurocomputing algorithm for adaptive plasticity in pattern analysis , 2002, Neurocomputing.

[17]  Axel Wismüller,et al.  A Neural Network Approach to Functional MRI Pattern Analysis — Clustering of Time-Series by Hierarchical Vector Quantization , 1998 .

[18]  Axel Wismüller,et al.  Cluster Analysis of Biomedical Image Time-Series , 2002, International Journal of Computer Vision.

[19]  Anke Meyer-Bäse,et al.  Cluster analysis of dynamic cerebral contrast-enhanced perfusion MRI time-series , 2006, IEEE Transactions on Medical Imaging.

[20]  T. Twellmann,et al.  Detection of suspicious lesions in dynamic contrast enhanced MRI data , 2004, The 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

[21]  Phil Hoole,et al.  A Segmentation and Analysis Method for MRI Data of the Human Vocal Tract , 2003, Bildverarbeitung für die Medizin.

[22]  Axel Wismüller,et al.  Prediction of Biomechanical Properties of Trabecular Bone in MR Images With Geometric Features and Support Vector Regression , 2011, IEEE Transactions on Biomedical Engineering.

[23]  M.Kleinberg Jon,et al.  Advances in Self-Organizing Maps, 7th International Workshop, WSOM 2009, St. Augustine, FL, USA, June 8-10, 2009. Proceedings , 2009, WSOM.

[24]  M. Reiser,et al.  Classification of Small Contrast Enhancing Breast Lesions in Dynamic Magnetic Resonance Imaging Using a Combination of Morphological Criteria and Dynamic Analysis Based on Unsupervised Vector-Quantization , 2008, Investigative radiology.

[25]  E. Bullmore,et al.  Behavioral / Systems / Cognitive Functional Connectivity and Brain Networks in Schizophrenia , 2010 .

[26]  Axel Wismüller,et al.  Classification of Small Lesions in Breast MRI: Evaluating The Role of Dynamically Extracted Texture Features Through Feature Selection. , 2013, Journal of medical and biological engineering.

[27]  Christian Kroos,et al.  Analysis of tongue configuration in multi-speaker, multi-volume MRI data , 2000 .

[28]  A. Meyer-Base,et al.  Stability analysis of a self-organizing neural network with feedforward and feedback dynamics , 2004, 2004 IEEE International Joint Conference on Neural Networks (IEEE Cat. No.04CH37541).

[29]  Peter Hastreiter,et al.  Bildverarbeitung für die Medizin 2003 , 2003 .

[30]  Michel Verleysen,et al.  Recent Advances in Nonlinear Dimensionality Reduction, Manifold and Topological Learning , 2010, ESANN.

[31]  Frederik Barkhof,et al.  The limits of functional reorganization in multiple sclerosis , 2010, Neurology.

[32]  M. Reiser,et al.  Cluster analysis of signal-intensity time course in dynamic breast MRI: does unsupervised vector quantization help to evaluate small mammographic lesions? , 2006, European Radiology.

[33]  M. Filippi,et al.  Impaired functional integration in multiple sclerosis: a graph theory study , 2014, Brain Structure and Function.

[34]  Axel Wismüller,et al.  Classification of small lesions in dynamic breast MRI: eliminating the need for precise lesion segmentation through spatio-temporal analysis of contrast enhancement , 2012, Machine Vision and Applications.

[35]  F. Barkhof,et al.  Resting state networks change in clinically isolated syndrome. , 2010, Brain : a journal of neurology.

[36]  N. Tzourio-Mazoyer,et al.  Automated Anatomical Labeling of Activations in SPM Using a Macroscopic Anatomical Parcellation of the MNI MRI Single-Subject Brain , 2002, NeuroImage.

[37]  Axel Wismüller The exploration machine: a novel method for analyzing high-dimensional data in computer-aided diagnosis , 2009, Medical Imaging.

[38]  Anke Meyer-Bäse,et al.  Model-free functional MRI analysis based on unsupervised clustering , 2004 .

[39]  Axel Wismüller,et al.  Investigating changes in brain network properties in HIV-associated neurocognitive disease (HAND) using mutual connectivity analysis (MCA) , 2016, SPIE Medical Imaging.

[40]  Axel Wismüller A Computational Framework for Nonlinear Dimensionality Reduction and Clustering , 2009, WSOM.

[41]  Axel Wismüller,et al.  The Exploration Machine - A Novel Method for Data Visualization , 2009, WSOM.

[42]  Mahesh B. Nagarajan,et al.  Performance of topological texture features to classify fibrotic interstitial lung disease patterns. , 2011, Medical physics.

[43]  Thomas Villmann,et al.  Neighbor embedding XOM for dimension reduction and visualization , 2011, Neurocomputing.

[44]  F. Gonzalez-Lima,et al.  Structural equation modeling and its application to network analysis in functional brain imaging , 1994 .

[45]  Olaf Sporns,et al.  Complex network measures of brain connectivity: Uses and interpretations , 2010, NeuroImage.