Computational Studies and Biosynthesis of Natural Products with Promising Anticancer Properties
暂无分享,去创建一个
[1] J. Willis. A dictionary of the flowering plants and ferns , 1967 .
[2] R. Southgate,et al. Alkaloid biosynthesis. Part XII. The biosynthesis of narcotine , 1968 .
[3] R. Southgate,et al. Alkaloid biosynthesis. XII. The biosynthesis of narcotine. , 1968, Journal of the Chemical Society. Perkin transactions 1.
[4] R. Noble. The discovery of the vinca alkaloids--chemotherapeutic agents against cancer. , 1990, Biochemistry and cell biology = Biochimie et biologie cellulaire.
[5] M Frey,et al. Analysis of a chemical plant defense mechanism in grasses. , 1997, Science.
[6] K. Ye,et al. Opium alkaloid noscapine is an antitumor agent that arrests metaphase and induces apoptosis in dividing cells. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[7] H. Grossniklaus,et al. Noscapine inhibits tumor growth with little toxicity to normal tissues or inhibition of immune responses , 2000, Cancer Immunology, Immunotherapy.
[8] P. Giannakakou,et al. Paclitaxel-resistant Human Ovarian Cancer Cells Undergo c-Jun NH2-terminal Kinase-mediated Apoptosis in Response to Noscapine* , 2002, The Journal of Biological Chemistry.
[9] G. Church,et al. Genome-Scale Metabolic Model of Helicobacter pylori 26695 , 2002, Journal of bacteriology.
[10] P. Shannon,et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.
[11] D J Newman,et al. Plants as a source of anti-cancer and anti-HIV agents , 2003 .
[12] John R Carney,et al. Combinatorial polyketide biosynthesis by de novo design and rearrangement of modular polyketide synthase genes , 2005, Nature Biotechnology.
[13] N. Gupta,et al. Therapeutic uses of Ocimum sanctum Linn (Tulsi) with a note on eugenol and its pharmacological actions: a short review. , 2005, Indian journal of physiology and pharmacology.
[14] Matej Oresic,et al. Gene-to-metabolite networks for terpenoid indole alkaloid biosynthesis in Catharanthus roseus cells. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[15] C. Khare,et al. Indian Medicinal Plants: An Illustrated Dictionary , 2007 .
[16] V. Hatzimanikatis,et al. Thermodynamics-based metabolic flux analysis. , 2007, Biophysical journal.
[17] B. Palsson,et al. Genome-scale Reconstruction of Metabolic Network in Bacillus subtilis Based on High-throughput Phenotyping and Gene Essentiality Data* , 2007, Journal of Biological Chemistry.
[18] C. Claudel-Renard,et al. MADIBA: A web server toolkit for biological interpretation of Plasmodium and plant gene clusters , 2008, BMC Genomics.
[19] J. Zucko,et al. ClustScan: an integrated program package for the semi-automatic annotation of modular biosynthetic gene clusters and in silico prediction of novel chemical structures , 2008, Nucleic acids research.
[20] A. Figueiredo,et al. Factors affecting secondary metabolite production in plants: volatile components and essential oils , 2008 .
[21] Chris T. A. Evelo,et al. Presenting and exploring biological pathways with PathVisio , 2008, BMC Bioinformatics.
[22] P. Cordopatis,et al. Exploring the Potential of Natural Products in Cancer Treatment , 2008 .
[23] Jason A. Papin,et al. Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology , 2008, PLoS Comput. Biol..
[24] Vincent Schächter,et al. CycSim—an online tool for exploring and experimenting with genome-scale metabolic models , 2009, Bioinform..
[25] Yoshihiro Yamanishi,et al. E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs , 2009, Bioinform..
[26] D. Newman,et al. Impact of natural products on developing new anti-cancer agents. , 2009, Chemical reviews.
[27] Hsien-Da Huang,et al. FMM: a web server for metabolic pathway reconstruction and comparative analysis , 2009, Nucleic Acids Res..
[28] Miguel Rocha,et al. OptFlux: an open-source software platform for in silico metabolic engineering , 2010, BMC Systems Biology.
[29] V. Schachter,et al. Genome-scale models of bacterial metabolism: reconstruction and applications , 2008, FEMS microbiology reviews.
[30] Adam M. Feist,et al. Reconstruction of biochemical networks in microorganisms , 2009, Nature Reviews Microbiology.
[31] K. Patil,et al. Enhancing sesquiterpene production in Saccharomyces cerevisiae through in silico driven metabolic engineering. , 2009, Metabolic engineering.
[32] Anne Osbourn,et al. Secondary metabolic gene clusters: evolutionary toolkits for chemical innovation. , 2010, Trends in genetics : TIG.
[33] Oliver Kohlbacher,et al. Combining Structure and Sequence Information Allows Automated Prediction of Substrate Specificities within Enzyme Families , 2010, PLoS Comput. Biol..
[34] Keith E. J. Tyo,et al. Isoprenoid Pathway Optimization for Taxol Precursor Overproduction in Escherichia coli , 2010, Science.
[35] Susumu Goto,et al. PathPred: an enzyme-catalyzed metabolic pathway prediction server , 2010, Nucleic Acids Res..
[36] A. Osbourn. Gene Clusters for Secondary Metabolic Pathways: An Emerging Theme in Plant Biology1 , 2010, Plant Physiology.
[37] Jeffrey D Orth,et al. What is flux balance analysis? , 2010, Nature Biotechnology.
[38] E. Marcotte,et al. Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana , 2010, Nature Biotechnology.
[39] A. L. Risinger,et al. Taccalonolides: Novel microtubule stabilizers with clinical potential. , 2010, Cancer letters.
[40] J. Zucko,et al. Recombinatorial biosynthesis of polyketides , 2011, Journal of Industrial Microbiology & Biotechnology.
[41] Pablo Carbonell,et al. A retrosynthetic biology approach to metabolic pathway design for therapeutic production , 2011, BMC Systems Biology.
[42] Ronan M. T. Fleming,et al. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0 , 2007, Nature Protocols.
[43] Kai Blin,et al. NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity , 2011, Nucleic Acids Res..
[44] Joost Boele,et al. FAME, the Flux Analysis and Modeling Environment , 2012, BMC Systems Biology.
[45] P. Kuo,et al. Isolinderanolide B, a Butanolide Extracted From the Stems of Cinnamomum subavenium, Inhibits Proliferation of T24 Human Bladder Cancer Cells by Blocking Cell Cycle Progression and Inducing Apoptosis , 2011, Integrative cancer therapies.
[46] Shane S. Sturrock,et al. Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data , 2012, Bioinform..
[47] S. O’Connor,et al. Plant Gene Clusters and Opiates , 2012, Science.
[48] V. De Luca,et al. Mining the Biodiversity of Plants: A Revolution in the Making , 2012, Science.
[49] Justin Preece,et al. WikiPathways for plants: a community pathway curation portal and a case study in rice and arabidopsis seed development networks , 2013, Rice.
[50] Chris T. A. Evelo,et al. WikiPathways: building research communities on biological pathways , 2011, Nucleic Acids Res..
[51] T. Winzer,et al. A Papaver somniferum 10-Gene Cluster for Synthesis of the Anticancer Alkaloid Noscapine , 2012, Science.
[52] A. Kinghorn,et al. Discovery of new anticancer agents from higher plants. , 2012, Frontiers in bioscience.
[53] Pablo Carbonell,et al. A retrosynthetic biology approach to therapeutics: from conception to delivery. , 2012, Current opinion in biotechnology.
[54] Insuk Lee,et al. Towards understanding how molecular networks evolve in plants. , 2012, Current opinion in plant biology.
[55] Rainer Breitling,et al. Computational tools for the synthetic design of biochemical pathways , 2012, Nature Reviews Microbiology.
[56] Peter D. Karp,et al. The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases , 2007, Nucleic Acids Res..
[57] Gajendra P. S. Raghava,et al. NPACT: Naturally Occurring Plant-based Anti-cancer Compound-Activity-Target database , 2012, Nucleic Acids Res..
[58] Márcia M. Almeida-de-Macedo,et al. A global approach to analysis and interpretation of metabolic data for plant natural product discovery. , 2013, Natural product reports.
[59] J. Zucko,et al. Databases of the thiotemplate modular systems (CSDB) and their in silico recombinants (r-CSDB) , 2013, Journal of Industrial Microbiology & Biotechnology.
[60] Kyong-Tai Kim,et al. Obtusilactone B from Machilus Thunbergii Targets Barrier-to-Autointegration Factor to Treat Cancer , 2013, Molecular Pharmacology.
[61] Kyle R. Conway,et al. ClusterMine360: a database of microbial PKS/NRPS biosynthesis , 2012, Nucleic Acids Res..
[62] Nobuyuki Fujita,et al. DoBISCUIT: a database of secondary metabolite biosynthetic gene clusters , 2012, Nucleic Acids Res..
[63] Katharina J. Hoff,et al. WebAUGUSTUS—a web service for training AUGUSTUS and predicting genes in eukaryotes , 2013, Nucleic Acids Res..
[64] Lin 林如華JU-HWA,et al. Subamolide B Isolated from Medicinal Plant Cinnamomum subavenium Induces Cytotoxicity in Human Cutaneous Squamous Cell Carcinoma Cells through Mitochondrial and CHOP-Dependent Cell Death Pathways , 2013 .
[65] Chung-Yi Chen,et al. The Effect of Butanolides from Cinnamomum tenuifolium on Platelet Aggregation , 2013, Molecules.
[66] E. Kim,et al. Microbial biosynthesis of medicinally important plant secondary metabolites. , 2014, Natural product reports.
[67] S. Rhee,et al. Becoming data-savvy in a big-data world. , 2014, Trends in plant science.
[68] Avlant Nilsson,et al. BioMet Toolbox 2.0: genome-wide analysis of metabolism and omics data , 2014, Nucleic Acids Res..
[69] F. Ntie‐Kang,et al. The chemistry and biological activities of natural products from Northern African plant families: from Aloaceae to Cupressaceae , 2014 .
[70] A. Osbourn,et al. Gene clustering in plant specialized metabolism. , 2014, Current opinion in biotechnology.
[71] Fangfang Xia,et al. The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) , 2013, Nucleic Acids Res..
[72] S. Rhee,et al. Towards revealing the functions of all genes in plants. , 2014, Trends in plant science.
[73] Kate Dreher,et al. Putting The Plant Metabolic Network pathway databases to work: going offline to gain new capabilities. , 2014, Methods in molecular biology.
[74] Tilmann Weber,et al. In silico tools for the analysis of antibiotic biosynthetic pathways. , 2014, International journal of medical microbiology : IJMM.
[75] Seung Y. Rhee,et al. Genomic Signatures of Specialized Metabolism in Plants , 2014, Science.
[76] M. Iwu,et al. Anticancer Potential of African Plants: The Experience of the United States National Cancer Institute and National Institutes of Health1 , 2014 .
[77] Wolfgang Sippl,et al. Molecular Modeling of Potential Anticancer Agents from African Medicinal Plants , 2014, J. Chem. Inf. Model..
[78] Yeo Joon Yoon,et al. Reinvigorating natural product combinatorial biosynthesis with synthetic biology. , 2015, Nature chemical biology.
[79] Michael A. Skinnider,et al. An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products , 2015, Nature Communications.
[80] Warren Lau,et al. Six enzymes from mayapple that complete the biosynthetic pathway to the etoposide aglycone , 2015, Science.
[81] Michael A Fischbach,et al. Computational approaches to natural product discovery. , 2015, Nature chemical biology.
[82] Oommen K. Mathew,et al. Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties , 2015, BMC Plant Biology.
[83] Seung Yon Rhee,et al. microProtein Prediction Program (miP3): A Software for Predicting microProteins and Their Target Transcription Factors , 2015, International journal of genomics.
[84] Nuno Nunes,et al. PathVisio 3: An Extendable Pathway Analysis Toolbox , 2015, PLoS Comput. Biol..
[85] Kai Blin,et al. antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters , 2015, Nucleic Acids Res..
[86] F. Ntie‐Kang,et al. The Chemistry and Biological Activities of Natural Products from Northern African Plant Families: From Ebenaceae to Solanaceae , 2015 .
[87] I. Abe,et al. Chojalactones A-C, cytotoxic butanolides isolated from Streptomyces sp. cultivated with mycolic acid containing bacterium. , 2015, Organic letters.
[88] Michael A. Skinnider,et al. Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM) , 2015, Nucleic acids research.
[89] Victor M. Markowitz,et al. IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites , 2015, mBio.
[90] Nicole K Clay,et al. A new cyanogenic metabolite in Arabidopsis required for inducible pathogen defense , 2015, Nature.
[91] M. Cassera,et al. Antiproliferative Compounds from Cleistanthus boivinianus from the Madagascar Dry Forest1 , 2015, Journal of natural products.
[92] Carla S. Jones,et al. Minimum Information about a Biosynthetic Gene cluster. , 2015, Nature chemical biology.
[93] V. Rasamison,et al. Antiproliferative Compounds from Ocotea macrocarpa from the Madagascar Dry Forest1. , 2015, Tetrahedron letters.
[94] Bernardo J. Clavijo,et al. Genome-guided investigation of plant natural product biosynthesis. , 2015, The Plant journal : for cell and molecular biology.
[95] C. V. Simoben,et al. Exploring Cancer Therapeutics with Natural Products from African Medicinal Plants, Part I: Xanthones, Quinones, Steroids, Coumarins, Phenolics and other Classes of Compounds. , 2015, Anti-cancer agents in medicinal chemistry.
[96] M. Medema,et al. Computational strategies for genome-based natural product discovery and engineering in fungi. , 2016, Fungal genetics and biology : FG & B.
[97] Minoru Kanehisa,et al. KEGG Bioinformatics Resource for Plant Genomics and Metabolomics. , 2016, Methods in molecular biology.
[98] Robert D. Finn,et al. The Pfam protein families database: towards a more sustainable future , 2015, Nucleic Acids Res..
[99] C. V. Simoben,et al. Exploring Cancer Therapeutics with Natural Products from African Medicinal Plants, Part II: Alkaloids, Terpenoids and Flavonoids. , 2015, Anti-cancer agents in medicinal chemistry.
[100] M. Leal,et al. Natural products discovery needs improved taxonomic and geographic information. , 2016, Natural product reports.
[101] Yvette I. Malange,et al. The Chemistry and Biological Activities of Natural Products from Northern African Plant Families: From Taccaceae to Zygophyllaceae , 2016, Natural Products and Bioprospecting.
[102] Huimin Zhao,et al. New tools for reconstruction and heterologous expression of natural product biosynthetic gene clusters. , 2016, Natural product reports.
[103] Marnix H Medema,et al. Comprehensive curation and analysis of fungal biosynthetic gene clusters of published natural products. , 2016, Fungal genetics and biology : FG & B.
[104] Rainer Breitling,et al. Bioinformatics for the synthetic biology of natural products: integrating across the Design–Build–Test cycle , 2016, Natural product reports.
[105] Wolfgang Sippl,et al. Pharmacophore modeling and in silico toxicity assessment of potential anticancer agents from African medicinal plants , 2016, Drug design, development and therapy.
[106] Tilmann Weber,et al. The secondary metabolite bioinformatics portal: Computational tools to facilitate synthetic biology of secondary metabolite production , 2016, Synthetic and systems biotechnology.
[107] Anne Osbourn,et al. Computational genomic identification and functional reconstitution of plant natural product biosynthetic pathways , 2016, Natural product reports.
[108] Ryan Miller,et al. WikiPathways: capturing the full diversity of pathway knowledge , 2015, Nucleic Acids Res..
[109] Huimin Zhao,et al. Standardization for natural product synthetic biology. , 2016, Natural product reports.
[110] Nicolas Tremblay,et al. The Use of ClusterMine360 for the Analysis of Polyketide and Nonribosomal Peptide Biosynthetic Pathways. , 2016, Methods in molecular biology.
[111] D. Newman,et al. Natural Products as Sources of New Drugs from 1981 to 2014. , 2016, Journal of natural products.
[112] Renzo Kottmann,et al. The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters , 2016, Nucleic Acids Res..
[113] Conrad V. Simoben and Fidele Ntie-Kang. African Medicinal Plants: An Untapped Reservoir of Potential Anticancer Agents , 2017 .
[114] J. Pelletier,et al. Polyoxygenated Cyclohexenes and Other Constituents of Cleistochlamys kirkii Leaves. , 2017, Journal of natural products.
[115] Robert Petryszak,et al. Plant Reactome: a resource for plant pathways and comparative analysis , 2016, Nucleic Acids Res..
[116] P. Midford,et al. The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases , 2007, Nucleic Acids Res..