Statistical modelling of the geometry of planar sections of prostatic capillaries on the basis of stationary Strauss hard‐core processes

In a recent study, the capillarization of normal prostatic tissue and prostatic carcinoma tissue was characterized by means of explorative methods of spatial statistics. In the present paper, an attempt was made to go beyond the explorative approach and to characterize the observed point patterns of the capillary profiles on sections by means of a parametric model. For this purpose, the flexible class of Gibbs processes was considered. Specifically, stationary Strauss hard‐core processes were fitted to the observed point patterns. The goodness of fit achieved by the model was checked by simulations with the Markov chain Monte Carlo method using the Metropolis–Hastings algorithm. Model fitting and simulations were performed with the help of the spatstat package under R. The observed point patterns were in some cases compatible with realizations of stationary Strauss hard‐core processes for all ranges of spatial interaction. However, deviations from the model were found for one or more domains of ranges in other cases. In the tumour tissue, a highly significant decrease of the interaction parameter of the Strauss hard‐core process could be found as compared to the normal prostatic tissue. This finding is discussed in terms of a loss of the normal lobular architecture of the glands in the tumour tissue.

[1]  A. Baddeley,et al.  Practical Maximum Pseudolikelihood for Spatial Point Patterns , 1998, Advances in Applied Probability.

[2]  Sylvia Richardson,et al.  Inference and monitoring convergence , 1995 .

[3]  Volker Schmidt,et al.  Analysis of Spatial Point Patterns in Microscopic and Macroscopic Biological Image Data , 2006 .

[4]  B. Ripley Modelling Spatial Patterns , 1977 .

[5]  Jesper Møller,et al.  An Introduction to Simulation-Based Inference for Spatial Point Processes , 2003 .

[6]  Jürgen Symanzik,et al.  Statistical Analysis of Spatial Point Patterns , 2005, Technometrics.

[7]  T. Mattfeldt,et al.  Statistical analysis of reduced pair correlation functions of capillaries in the prostate gland , 2006, Journal of microscopy.

[8]  Jesper Møller,et al.  Markov chain Monte Carlo and spatial point processes , 2019, Stochastic Geometry.

[9]  S. Chib,et al.  Understanding the Metropolis-Hastings Algorithm , 1995 .

[10]  J. Symanzik Statistical Analysis of Spatial Point Patterns (2nd ed.) , 2005 .

[11]  Adrian Baddeley,et al.  spatstat: An R Package for Analyzing Spatial Point Patterns , 2005 .

[12]  Aila Särkkä,et al.  Parameter Estimation for Marked Gibbs Point Processes Through the Maximum Pseudo-likelihood Method , 1996 .

[13]  R. Takacs,et al.  Interaction Pair-potentials for a System of Ant's Nests , 1986 .

[14]  Dietrich Stoyan,et al.  Improving Ratio Estimators of Second Order Point Process Characteristics , 2000 .

[15]  van Marie-Colette Lieshout,et al.  Markov Point Processes and Their Applications , 2000 .

[16]  Stoyan,et al.  Stereological analysis and modelling of gradient structures , 1999, Journal of microscopy.

[17]  C. Geyer,et al.  Simulation Procedures and Likelihood Inference for Spatial Point Processes , 1994 .

[18]  B. Ripley Statistical inference for spatial processes , 1990 .

[19]  D Stoyan,et al.  Second‐order stereology of spatial fibre systems , 2004, Journal of microscopy.

[20]  Katja Schladitz,et al.  Statistical analysis of intramembranous particles using freeze fracture specimens , 2003, Journal of microscopy.

[21]  D. Stoyan,et al.  Fractals, random shapes and point fields : methods of geometrical statistics , 1996 .

[22]  D. Stoyan,et al.  Stochastic Geometry and Its Applications , 1989 .

[23]  J. Ohser,et al.  On estimators for the reduced second moment measure of point processes , 1983 .

[24]  T. Mattfeldt,et al.  Explorative statistical analysis of planar point processes in microscopy , 2005, Journal of microscopy.

[25]  B. Hambly Fractals, random shapes, and point fields , 1994 .

[26]  J. Møller,et al.  Statistical Inference and Simulation for Spatial Point Processes , 2003 .

[27]  Description of relations between spatial variability of microstructure and mechanical strength of alumina ceramics , 1990 .

[28]  Adrian Baddeley,et al.  Modelling Spatial Point Patterns in R , 2006 .

[29]  P. Diggle,et al.  On parameter estimation for pairwise interaction point processes , 1994 .

[30]  A. Baddeley,et al.  Residual analysis for spatial point processes (with discussion) , 2005 .