Cysteine peptidases of Eudiplozoon nipponicum: a broad repertoire of structurally assorted cathepsins L in contrast to the scarcity of cathepsins B in an invasive species of haematophagous monogenean of common carp

[1]  Evan Bolton,et al.  Database resources of the National Center for Biotechnology Information , 2017, Nucleic Acids Res..

[2]  Kevin L. Howe,et al.  WormBase ParaSite − a comprehensive resource for helminth genomics , 2017, Molecular and biochemical parasitology.

[3]  Lior Pachter,et al.  Near-optimal probabilistic RNA-seq quantification , 2016, Nature Biotechnology.

[4]  K. Ulbrich,et al.  iBodies: Modular Synthetic Antibody Mimetics Based on Hydrophilic Polymers Decorated with Functional Moieties , 2016, Angewandte Chemie.

[5]  Z. Zdráhal,et al.  Major acid endopeptidases of the blood-feeding monogenean Eudiplozoon nipponicum (Heteronchoinea: Diplozoidae) , 2016, Parasitology.

[6]  Toshihisa Takagi,et al.  DNA data bank of Japan (DDBJ) progress report , 2015, Nucleic Acids Res..

[7]  Neil D. Rawlings,et al.  Twenty years of the MEROPS database of proteolytic enzymes, their substrates and inhibitors , 2015, Nucleic Acids Res..

[8]  I. Xenarios,et al.  UniProtKB/Swiss-Prot, the Manually Annotated Section of the UniProt KnowledgeBase: How to Use the Entry View. , 2016, Methods in molecular biology.

[9]  M. Beckmann,et al.  Selective expression of sense and antisense transcripts of the sushi-ichi-related retrotransposon – derived family during mouse placentogenesis , 2015, Retrovirology.

[10]  M. Kašný,et al.  Ultrastructure of the digestive tract of Paradiplozoon homoion (Monogenea) , 2015, Parasitology Research.

[11]  A. von Haeseler,et al.  IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies , 2014, Molecular biology and evolution.

[12]  K. Ogawa.  Diseases of cultured marine fishes caused by Platyhelminthes (Monogenea, Digenea, Cestoda) , 2014, Parasitology.

[13]  L. Steinmetz,et al.  Gene regulation by antisense transcription , 2013, Nature Reviews Genetics.

[14]  C. Caffrey,et al.  New insights into the machinery of blood digestion by ticks. , 2013, Trends in parasitology.

[15]  S. Brunak,et al.  Precision mapping of the human O‐GalNAc glycoproteome through SimpleCell technology , 2013, The EMBO journal.

[16]  K. Katoh,et al.  MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability , 2013, Molecular biology and evolution.

[17]  Vassilios Ioannidis,et al.  ExPASy: SIB bioinformatics resource portal , 2012, Nucleic Acids Res..

[18]  C. Caffrey,et al.  Trypanosoma brucei: chemical evidence that cathepsin L is essential for survival and a relevant drug target. , 2012, International journal for parasitology.

[19]  C. Craik,et al.  Analysis of Fasciola cathepsin L5 by S2 subsite substitutions and determination of the P1-P4 specificity reveals an unusual preference. , 2012, Biochimie.

[20]  J. Dalton,et al.  Fasciola hepatica virulence-associated cysteine peptidases: a systems biology perspective. , 2012, Microbes and infection.

[21]  J. Mindell.  Lysosomal acidification mechanisms. , 2012, Annual review of physiology.

[22]  D. Higgins,et al.  Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega , 2011, Molecular systems biology.

[23]  C. Craik,et al.  IrCL1 - the haemoglobinolytic cathepsin L of the hard tick, Ixodes ricinus. , 2011, International journal for parasitology.

[24]  S. Brunak,et al.  SignalP 4.0: discriminating signal peptides from transmembrane regions , 2011, Nature Methods.

[25]  D. Steverding.  The Cathepsin B-Selective Inhibitors CA-074 and CA-074Me Inactivate Cathepsin L Under Reducing Conditions , 2011 .

[26]  Joyce To,et al.  Collagenolytic Activities of the Major Secreted Cathepsin L Peptidases Involved in the Virulence of the Helminth Pathogen, Fasciola hepatica , 2011, PLoS neglected tropical diseases.

[27]  J. Dalton,et al.  Cysteine Proteases of Pathogenic Organisms , 2011 .

[28]  M. Gelnar,et al.  Eudiplozoon nipponicum in focus: monogenean exhibiting a highly specialized adaptation for ectoparasitic lifestyle , 2011, Parasitology Research.

[29]  P. Kapranov,et al.  Comprehensive Polyadenylation Site Maps in Yeast and Human Reveal Pervasive Alternative Polyadenylation , 2010, Cell.

[30]  T. Coetzer,et al.  Expression, purification and characterisation of two variant cysteine peptidases from Trypanosoma congolense with active site substitutions. , 2010, Protein expression and purification.

[31]  Alexis Criscuolo,et al.  BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments , 2010, BMC Evolutionary Biology.

[32]  M. Gelnar,et al.  The surface topography of Eudiplozoon nipponicum (Monogenea) developmental stages parasitizing carp (Cyprinus carpio L.) , 2010, Central European Journal of Biology.

[33]  B. Saville,et al.  Detection of antisense RNA transcripts by strand-specific RT-PCR. , 2010, Methods in molecular biology.

[34]  Patricia C Babbitt,et al.  The global cysteine peptidase landscape in parasites. , 2009, Trends in parasitology.

[35]  S. Beckmann,et al.  The Formin-Homology Protein SmDia Interacts with the Src Kinase SmTK and the GTPase SmRho1 in the Gonads of Schistosoma mansoni , 2009, PloS one.

[36]  J. Tort,et al.  The major cathepsin L secreted by the invasive juvenile Fasciola hepatica prefers proline in the S2 subsite and can cleave collagen. , 2009, Molecular and biochemical parasitology.

[37]  Patricia C. Babbitt,et al.  SmCL3, a Gastrodermal Cysteine Protease of the Human Blood Fluke Schistosoma mansoni , 2009, PLoS neglected tropical diseases.

[38]  A. Loukas,et al.  Cathepsin F Cysteine Protease of the Human Liver Fluke, Opisthorchis viverrini , 2009, PLoS neglected tropical diseases.

[39]  Petr Horák,et al.  The functional expression and characterisation of a cysteine peptidase from the invasive stage of the neuropathogenic schistosome Trichobilharzia regenti , 2009, International journal for parasitology.

[40]  J. Dalton,et al.  The Importance of pH in Regulating the Function of the Fasciola hepatica Cathepsin L1 Cysteine Protease , 2009, PLoS neglected tropical diseases.

[41]  Jan Dvorák,et al.  Chapter 4. Peptidases of trematodes. , 2009, Advances in parasitology.

[42]  C. Craik,et al.  Structural and Functional Relationships in the Virulence-associated Cathepsin L Proteases of the Parasitic Liver Fluke, Fasciola hepatica* , 2008, Journal of Biological Chemistry.

[43]  H. Philippe,et al.  Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model , 2007, BMC Evolutionary Biology.

[44]  Tatiana Tatusova,et al.  NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins , 2004, Nucleic Acids Res..

[45]  Jan Dvorák,et al.  A Multienzyme Network Functions in Intestinal Protein Digestion by a Platyhelminth Parasite* , 2006, Journal of Biological Chemistry.

[46]  Adam Godzik,et al.  Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences , 2006, Bioinform..

[47]  Francesco Leonetti,et al.  Substrate Profiling of Cysteine Proteases Using a Combinatorial Peptide Library Identifies Functionally Unique Specificities* , 2006, Journal of Biological Chemistry.

[48]  A. Loukas,et al.  Proteases in trematode biology , 2006 .

[49]  K. Nieselt,et al.  Open reading frames provide a rich pool of potential natural antisense transcripts in fungal genomes , 2005, Nucleic acids research.

[50]  A. Sali,et al.  Multiple cathepsin B isoforms in schistosomula of Trichobilharzia regenti: identification, characterisation and putative role in migration and nutrition. , 2005, International journal for parasitology.

[51]  Chaoqun Wu,et al.  Cloning, expression, and refolding of a secretory protein ESAT-6 of Mycobacterium tuberculosis. , 2005, Protein expression and purification.

[52]  Andrei N. Lupas,et al.  CLANS: a Java application for visualizing protein families based on pairwise similarity , 2004, Bioinform..

[53]  Lewis C Cantley,et al.  A Multi-enzyme Cascade of Hemoglobin Proteolysis in the Intestine of Blood-feeding Hookworms* , 2004, Journal of Biological Chemistry.

[54]  J. Dalton,et al.  Role of the tegument and gut in nutrient uptake by parasitic platyhelminths , 2004 .

[55]  Gregory D. Schuler,et al.  Database resources of the National Center for Biotechnology Information: update , 2004, Nucleic acids research.

[56]  Cathy H. Wu,et al.  UniProt: the Universal Protein knowledgebase , 2004, Nucleic Acids Res..

[57]  Shoshi Kikuchi,et al.  Antisense transcripts with rice full-length cDNAs , 2003, Genome Biology.

[58]  M. Bogyo,et al.  Functional expression and characterization of Schistosoma mansoni cathepsin B and its trans-activation by an endogenous asparaginyl endopeptidase. , 2003, Molecular and biochemical parasitology.

[59]  A. Loukas,et al.  Digestive proteases of blood-feeding nematodes. , 2003, Trends in parasitology.

[60]  P. Man,et al.  Purification and characterization of a saccharide-binding protein from penetration glands of Diplostomum pseudospathaceum – a bifunctional molecule with cysteine protease activity , 2003, Parasitology.

[61]  C. Craik,et al.  Selective inhibition of the collagenolytic activity of human cathepsin K by altering its S2 subsite specificity. , 2002, Biochemistry.

[62]  Linda A. Murray,et al.  A cathepsin L protease essential for Caenorhabditis elegans embryogenesis is functionally conserved in parasitic nematodes. , 2002, Molecular and biochemical parasitology.

[63]  D. Peterson,et al.  A novel cathepsin B active site motif is shared by helminth bloodfeeders. , 2002, Experimental parasitology.

[64]  Andreas Ruppel,et al.  SmCB2, a novel tegumental cathepsin B from adult Schistosoma mansoni. , 2002, Molecular and biochemical parasitology.

[65]  M. Sajid,et al.  Cysteine proteases of parasitic organisms. , 2002, Molecular and biochemical parasitology.

[66]  A. Burlingame,et al.  Chemical Approaches for Functionally Probing the Proteome* , 2002, Molecular & Cellular Proteomics.

[67]  C. O. Cunningham,et al.  Genetic characterization of six species of diplozoids (Monogenea; Diplozoidae) , 2001, Parasitology.

[68]  G. Jung,et al.  Highly potent inhibitors of human cathepsin L identified by screening combinatorial pentapeptide amide collections. , 2000, European journal of biochemistry.

[69]  J. Dalton,et al.  Schistosoma mansoni: differential expression of cathepsins L1 and L2 suggests discrete biological functions for each enzyme. , 2000, Experimental parasitology.

[70]  J. Whisstock,et al.  For the record: A single amino acid substitution affects substrate specificity in cysteine proteinases from Fasciola hepatica , 2000, Protein science : a publication of the Protein Society.

[71]  T. N. Bhat,et al.  The Protein Data Bank , 2000, Nucleic Acids Res..

[72]  K. H. Wolfe,et al.  Proteinases and associated genes of parasitic helminths. , 1999, Advances in parasitology.

[73]  M. Mcgrath.  The lysosomal cysteine proteases. , 1999, Annual review of biophysics and biomolecular structure.

[74]  D. Halton.  Nutritional adaptations to parasitism within the platyhelminthes. , 1997, International journal for parasitology.

[75]  T Vernet,et al.  Role of the Occluding Loop in Cathepsin B Activity* , 1997, The Journal of Biological Chemistry.

[76]  M. Klinkert,et al.  Sequence, characterization and localization of a cysteine proteinase cathepsin L in Schistosoma mansoni. , 1995, Molecular and biochemical parasitology.

[77]  P. Bonneau,et al.  Engineering the S2 subsite specificity of human cathepsin S to a cathepsin L- and cathepsin B-like specificity. , 1994, The Journal of biological chemistry.

[78]  D. Sonenshine.  Biology of ticks. Volume I. , 1991 .

[79]  C. Chappell,et al.  Schistosoma mansoni: proteinase activity of "hemoglobinase" from the digestive tract of adult worms. , 1986, Experimental parasitology.

[80]  A. Denis,et al.  Présence en France de deux parasites d'origine est-asiatique : Diplozoon nipponicum Goto, 1891 (Monogenea) et Bothriocephalus acheilognathi Yamaguti, 1934 (Cestoda) chez Cyprinus carpio (Teleostei, Cyprinidae) , 1983 .

[81]  H. Kawatsu.  Studies on the Anemia of Fish-IX , 1978 .