Identification of pneumococcal colonization determinants in the stringent response pathway facilitated by genomic diversity

[1]  Stephen D. Bentley,et al.  Diversification of bacterial genome content through distinct mechanisms over different timescales , 2014, Nature Communications.

[2]  M. Lipsitch,et al.  Surface Charge of Streptococcus pneumoniae Predicts Serotype Distribution , 2013, Infection and Immunity.

[3]  Marc Lipsitch,et al.  Within-Host Selection Is Limited by an Effective Population of Streptococcus pneumoniae during Nasopharyngeal Colonization , 2013, Infection and Immunity.

[4]  M. Lipsitch,et al.  Population genomics of post-vaccine changes in pneumococcal epidemiology , 2013, Nature Genetics.

[5]  Xiu Lin,et al.  Facing growth in the European Nucleotide Archive , 2012, Nucleic Acids Res..

[6]  Todd M. Gierahn,et al.  Distinct Effects on Diversifying Selection by Two Mechanisms of Immunity against Streptococcus pneumoniae , 2012, PLoS pathogens.

[7]  A. Camilli,et al.  A fine scale phenotype–genotype virulence map of a bacterial pathogen , 2012, Genome research.

[8]  Lars Barquist,et al.  A High-Resolution View of Genome-Wide Pneumococcal Transformation , 2012, PLoS pathogens.

[9]  M. Lipsitch,et al.  Serotype replacement in disease after pneumococcal vaccination , 2011, The Lancet.

[10]  S. Bentley,et al.  Improved Detection of Nasopharyngeal Cocolonization by Multiple Pneumococcal Serotypes by Use of Latex Agglutination or Molecular Serotyping by Microarray , 2011, Journal of Clinical Microbiology.

[11]  M. de Martino,et al.  Realtime PCR Is More Sensitive than Multiplex PCR for Diagnosis and Serotyping in Children with Culture Negative Pneumococcal Invasive Disease , 2010, PloS one.

[12]  Gonçalo R. Abecasis,et al.  The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..

[13]  J. Galagan,et al.  Pneumococcal Capsular Polysaccharide Structure Predicts Serotype Prevalence , 2009, PLoS pathogens.

[14]  A. Rechtsteiner,et al.  Roles of relSpn in stringent response, global regulation and virulence of serotype 2 Streptococcus pneumoniae D39 , 2009, Molecular microbiology.

[15]  Kalidas Yeturu,et al.  targetTB: A target identification pipeline for Mycobacterium tuberculosis through an interactome, reactome and genome-scale structural analysis , 2008, BMC Systems Biology.

[16]  K. Potrykus,et al.  (p)ppGpp: still magical? , 2008, Annual review of microbiology.

[17]  Jue D. Wang,et al.  Control of bacterial transcription, translation and replication by (p)ppGpp. , 2008, Current opinion in microbiology.

[18]  M. Kalin,et al.  Discovery of a novel class of highly conserved vaccine antigens using genomic scale antigenic fingerprinting of pneumococcus with human antibodies , 2008, The Journal of experimental medicine.

[19]  L. Wernisch,et al.  Quantification of global transcription patterns in prokaryotes using spotted microarrays , 2007, Genome Biology.

[20]  Rodrigo Lopez,et al.  Clustal W and Clustal X version 2.0 , 2007, Bioinform..

[21]  R. de Groot,et al.  Streptococcus pneumoniae colonisation: the key to pneumococcal disease. , 2004, The Lancet. Infectious diseases.

[22]  M. Lipsitch,et al.  Construction of Otherwise Isogenic Serotype 6B, 7F, 14, and 19F Capsular Variants of Streptococcus pneumoniae Strain TIGR4 , 2003, Applied and Environmental Microbiology.

[23]  J. Claverys,et al.  An rpsL Cassette, Janus, for Gene Replacement through Negative Selection in Streptococcus pneumoniae , 2001, Applied and Environmental Microbiology.

[24]  G. Pozzi,et al.  Competence for genetic transformation in encapsulated strains of Streptococcus pneumoniae: two allelic variants of the peptide pheromone , 1996, Journal of bacteriology.

[25]  D. Kasper,et al.  Antibody recognition of the type 14 pneumococcal capsule. Evidence for a conformational epitope in a neutral polysaccharide , 1989, The Journal of experimental medicine.

[26]  Sequence analysis Advance Access publication June 7, 2011 The variant call format and VCFtools , 2010 .