Microfluidic processing of stem cells for autologous cell replacement

Autologous photoreceptor cell replacement is one of the most promising approaches currently under development for the treatment of inherited retinal degenerative blindness. Unlike endogenous stem cell populations, induced pluripotent stem cells (iPSCs) can be differentiated into both rod and cone photoreceptors in high numbers, making them ideal for this application. That said, in addition to photoreceptor cells, state of the art retinal differentiation protocols give rise to all of the different cell types of the normal retina, the majority of which are not required and may in fact hinder successful photoreceptor cell replacement. As such, following differentiation photoreceptor cell enrichment will likely be required. In addition, to prevent the newly generated photoreceptor cells from suffering the same fate as the patient's original cells, correction of the patient's disease‐causing genetic mutations will be necessary. In this review we discuss literature pertaining to the use of different cell sorting and transfection approaches with a focus on the development and use of novel next generation microfluidic devices. We will discuss how gold standard strategies have been used, the advantages and disadvantages of each, and how novel microfluidic platforms can be incorporated into the clinical manufacturing pipeline to reduce the complexity, cost, and regulatory burden associated with clinical grade production of photoreceptor cells for autologous cell replacement.

[1]  Ligong Chen,et al.  Efficient endothelial and smooth muscle cell differentiation from human pluripotent stem cells through a simplified insulin-free culture system. , 2021, Biomaterials.

[2]  A. Kleger,et al.  Generation of Functional Vascular Endothelial Cells and Pericytes from Keratinocyte Derived Human Induced Pluripotent Stem Cells , 2021, Cells.

[3]  Jianzhong Su,et al.  Human embryonic stem cell-derived organoid retinoblastoma reveals a cancerous origin , 2020, Proceedings of the National Academy of Sciences.

[4]  M Alejandra Zeballos C,et al.  Next-Generation CRISPR Technologies and Their Applications in Gene and Cell Therapy. , 2020, Trends in biotechnology.

[5]  E. Stone,et al.  Stepwise differentiation and functional characterization of human induced pluripotent stem cell-derived choroidal endothelial cells , 2020, Stem Cell Research & Therapy.

[6]  Gerrit Hilgen,et al.  Transplanted pluripotent stem cell-derived photoreceptor precursors elicit conventional and unusual light responses in mice with advanced retinal degeneration , 2020, bioRxiv.

[7]  H. Keirstead,et al.  Retina Organoid Transplants Develop Photoreceptors and Improve Visual Function in RCS Rats With RPE Dysfunction , 2020, Investigative ophthalmology & visual science.

[8]  Heng Zhou,et al.  COCO enhances the efficiency of photoreceptor precursor differentiation in early human embryonic stem cell-derived retinal organoids , 2020, Stem Cell Research & Therapy.

[9]  Andrew P. Voigt,et al.  Label-free microfluidic enrichment of photoreceptor cells. , 2020, Experimental eye research.

[10]  Jennifer J. Hunter,et al.  Imaging Transplanted Photoreceptors in Living Nonhuman Primates with Single-Cell Resolution , 2020, Stem cell reports.

[11]  Alireza F. Siahpirani,et al.  Human iPSC Modeling Reveals Mutation-Specific Responses to Gene Therapy in a Genotypically Diverse Dominant Maculopathy. , 2020, American journal of human genetics.

[12]  G. Orieux,et al.  [Photoreceptor cell transplantation for future treatment of retinitis pigmentosa]. , 2020, Medecine sciences : M/S.

[13]  N. Weintraub,et al.  Effective restoration of dystrophin expression in iPSC Mdx-derived muscle progenitor cells using the CRISPR/Cas9 system and homology-directed repair technology , 2020, Computational and structural biotechnology journal.

[14]  D. Zack,et al.  Investigating cone photoreceptor development using patient-derived NRL null retinal organoids , 2020, Communications Biology.

[15]  A. Nishiyama,et al.  CD140b and CD73 are markers for human induced pluripotent stem cell‐derived erythropoietin‐producing cells , 2020, FEBS open bio.

[16]  Jason S. Meyer,et al.  Differentiation of retinal organoids from human pluripotent stem cells. , 2020, Methods in cell biology.

[17]  N. Krasnogor,et al.  Developing a simple method to enhance the generation of cone and rod photoreceptors in pluripotent stem cell‐derived retinal organoids , 2019, Stem cells.

[18]  Brian S. Clark,et al.  Single-cell analysis of human retina identifies evolutionarily conserved and species-specific mechanisms controlling development , 2019, bioRxiv.

[19]  Ian C. Han,et al.  Development of a Molecularly Stable Gene Therapy Vector for the Treatment of RPGR-associated X-linked Retinitis Pigmentosa. , 2019, Human gene therapy.

[20]  M. Lako,et al.  Differentiation of Retinal Organoids from Human Pluripotent Stem Cells. , 2019, Current protocols in stem cell biology.

[21]  Andrew P. Voigt,et al.  Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing. , 2019, Experimental eye research.

[22]  M. Robinson,et al.  Generation of a Retina Reporter hiPSC Line to Label Progenitor, Ganglion, and Photoreceptor Cell Types , 2019, bioRxiv.

[23]  Seunghoon Lee,et al.  Generation, transcriptome profiling, and functional validation of cone-rich human retinal organoids , 2019, Proceedings of the National Academy of Sciences.

[24]  C. Estrela,et al.  Mesenchymal Stem Cell Marker Expression in Periapical Abscess. , 2019, Journal of endodontics.

[25]  E. Stone,et al.  Correction of NR2E3 Associated Enhanced S-cone Syndrome Patient-specific iPSCs using CRISPR-Cas9 , 2019, Genes.

[26]  O. Goureau,et al.  Photoreceptor cell replacement in macular degeneration and retinitis pigmentosa: A pluripotent stem cell-based approach , 2019, Progress in Retinal and Eye Research.

[27]  E. Sernagor,et al.  CRX Expression in Pluripotent Stem Cell‐Derived Photoreceptors Marks a Transplantable Subpopulation of Early Cones , 2019, Stem cells.

[28]  Hywel Morgan,et al.  Label-free enrichment of primary human skeletal progenitor cells using deterministic lateral displacement. , 2019, Lab on a chip.

[29]  Nathan Hotaling,et al.  Clinical-grade stem cell–derived retinal pigment epithelium patch rescues retinal degeneration in rodents and pigs , 2019, Science Translational Medicine.

[30]  A. J. Roman,et al.  Effect of an intravitreal antisense oligonucleotide on vision in Leber congenital amaurosis due to a photoreceptor cilium defect , 2018, Nature Medicine.

[31]  P. Qiu,et al.  Microfluidic generation of transient cell volume exchange for convectively driven intracellular delivery of large macromolecules. , 2018, Materials today.

[32]  Robert J. Thomas,et al.  Human‐Induced Pluripotent Stem Cells Generate Light Responsive Retinal Organoids with Variable and Nutrient‐Dependent Efficiency , 2018, Stem cells.

[33]  José-Alain Sahel,et al.  Characterization and Transplantation of CD73-Positive Photoreceptors Isolated from Human iPSC-Derived Retinal Organoids , 2018, Stem cell reports.

[34]  R. Horisaki,et al.  Ghost cytometry , 2018, Science.

[35]  K. Lundstrom Viral Vectors in Gene Therapy , 2018, Diseases.

[36]  E. Stone,et al.  CRISPR-Cas9 genome engineering: Treating inherited retinal degeneration , 2018, Progress in Retinal and Eye Research.

[37]  Zi-Bing Jin,et al.  Gene Correction Reverses Ciliopathy and Photoreceptor Loss in iPSC-Derived Retinal Organoids from Retinitis Pigmentosa Patients , 2018, Stem cell reports.

[38]  P. Qiu,et al.  Biophysical subsets of embryonic stem cells display distinct phenotypic and morphological signatures , 2018, PloS one.

[39]  E. Stone,et al.  CRISPR-Cas9-Based Genome Editing of Human Induced Pluripotent Stem Cells. , 2018, Current protocols in stem cell biology.

[40]  Masayo Takahashi,et al.  Generation of three-dimensional retinal organoids expressing rhodopsin and S- and M-cone opsins from mouse stem cells. , 2018, Biochemical and biophysical research communications.

[41]  Ian C. Han,et al.  Assessment of Adeno-Associated Virus Serotype Tropism in Human Retinal Explants. , 2017, Human gene therapy.

[42]  A. F. Sarioglu,et al.  Enhancing size based size separation through vertical focus microfluidics using secondary flow in a ridged microchannel , 2017, Scientific Reports.

[43]  G. Daley,et al.  Using CRISPR-Cas9 to Generate Gene-Corrected Autologous iPSCs for the Treatment of Inherited Retinal Degeneration. , 2017, Molecular therapy : the journal of the American Society of Gene Therapy.

[44]  Kathleen A. Marshall,et al.  Efficacy and safety of voretigene neparvovec (AAV2-hRPE65v2) in patients with RPE65-mediated inherited retinal dystrophy: a randomised, controlled, open-label, phase 3 trial , 2017, The Lancet.

[45]  E. Stone,et al.  Generation of Xeno-Free, cGMP-Compliant Patient-Specific iPSCs from Skin Biopsy. , 2017, Current protocols in stem cell biology.

[46]  José-Alain Sahel,et al.  Generation of Storable Retinal Organoids and Retinal Pigmented Epithelium from Adherent Human iPS Cells in Xeno‐Free and Feeder‐Free Conditions , 2017, Stem cells.

[47]  Takashi Daimon,et al.  Autologous Induced Stem‐Cell–Derived Retinal Cells for Macular Degeneration: Brief Report , 2017, The New England journal of medicine.

[48]  K. Homma,et al.  Knock‐in strategy at 3′‐end of Crx gene by CRISPR/Cas9 system shows the gene expression profiles during human photoreceptor differentiation , 2017, Genes to cells : devoted to molecular & cellular mechanisms.

[49]  Han Wei Hou,et al.  Advances in Single Cell Impedance Cytometry for Biomedical Applications , 2017, Micromachines.

[50]  Jing Xu,et al.  Efficient precise knockin with a double cut HDR donor after CRISPR/Cas9-mediated double-stranded DNA cleavage , 2017, Genome Biology.

[51]  David A. Brafman,et al.  May I Cut in? Gene Editing Approaches in Human Induced Pluripotent Stem Cells , 2017, Cells.

[52]  Yi-Wei Lee,et al.  Direct Cytosolic Delivery of CRISPR/Cas9-Ribonucleoprotein for Efficient Gene Editing. , 2017, ACS nano.

[53]  M. Ader,et al.  Rebuilding the Missing Part—A Review on Photoreceptor Transplantation , 2017, Front. Syst. Neurosci..

[54]  Giovanni Staurenghi,et al.  Autologous Induced Stem-Cell-Derived Retinal Cells for Macular Degeneration. , 2017, The New England journal of medicine.

[55]  J. Sturm,et al.  Automated leukocyte processing by microfluidic deterministic lateral displacement , 2016, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

[56]  Adam P. DeLuca,et al.  cGMP production of patient-specific iPSCs and photoreceptor precursor cells to treat retinal degenerative blindness , 2016, Scientific Reports.

[57]  J. Xu,et al.  Different Effects of sgRNA Length on CRISPR-mediated Gene Knockout Efficiency , 2016, Scientific Reports.

[58]  Zhaohui Ye,et al.  Gene correction in patient-specific iPSCs for therapy development and disease modeling , 2016, Human Genetics.

[59]  P. Carmeliet,et al.  Stem Cell-Derived Photoreceptor Transplants Differentially Integrate Into Mouse Models of Cone-Rod Dystrophy. , 2016, Investigative ophthalmology & visual science.

[60]  Koray D. Kaya,et al.  Treatment Paradigms for Retinal and Macular Diseases Using 3-D Retina Cultures Derived From Human Reporter Pluripotent Stem Cell Lines , 2016, Investigative ophthalmology & visual science.

[61]  E. Stone,et al.  Using Patient-Specific Induced Pluripotent Stem Cells and Wild-Type Mice to Develop a Gene Augmentation-Based Strategy to Treat CLN3-Associated Retinal Degeneration. , 2016, Human gene therapy.

[62]  Oliver Otto,et al.  Extracting Cell Stiffness from Real-Time Deformability Cytometry: Theory and Experiment , 2015, Biophysical journal.

[63]  G. Church,et al.  Crispr-mediated Gene Targeting of Human Induced Pluripotent Stem Cells. , 2015, Current protocols in stem cell biology.

[64]  E. Burchard,et al.  CRISPR-Cas9 mediated gene knockout in primary human airway epithelial cells reveals a pro-inflammatory role for MUC18 , 2015, Gene Therapy.

[65]  E. L. West,et al.  Transplantation of Photoreceptor Precursors Isolated via a Cell Surface Biomarker Panel From Embryonic Stem Cell‐Derived Self‐Forming Retina , 2015, Stem cells.

[66]  Todd Sulchek,et al.  Microfluidic cellular enrichment and separation through differences in viscoelastic deformation. , 2015, Lab on a chip.

[67]  G. Zeck,et al.  Daylight Vision Repair by Cell Transplantation , 2015, Stem cells.

[68]  H Bridle,et al.  Deterministic lateral displacement for particle separation: a review. , 2014, Lab on a chip.

[69]  Elias T. Zambidis,et al.  Generation of three dimensional retinal tissue with functional photoreceptors from human iPSCs , 2014, Nature Communications.

[70]  Daesik Kim,et al.  Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins , 2014, Genome research.

[71]  José-Alain Sahel,et al.  From confluent human iPS cells to self-forming neural retina and retinal pigmented epithelium , 2014, Proceedings of the National Academy of Sciences.

[72]  M. Ader,et al.  Subretinal transplantation of MACS purified photoreceptor precursor cells into the adult mouse retina. , 2014, Journal of visualized experiments : JoVE.

[73]  D. Zack,et al.  Modeling retinal dystrophies using patient-derived induced pluripotent stem cells. , 2014, Advances in experimental medicine and biology.

[74]  Prashant Mali,et al.  Genome editing in human stem cells. , 2014, Methods in enzymology.

[75]  T. Braun,et al.  Patient-specific iPSC-derived photoreceptor precursor cells as a means to investigate retinitis pigmentosa , 2013, eLife.

[76]  A. Swaroop,et al.  Developing Rods Transplanted into the Degenerating Retina of Crx‐Knockout Mice Exhibit Neural Activity Similar to Native Photoreceptors , 2013, Stem cells.

[77]  E. Henckaerts,et al.  Brief Report: Self‐Organizing Neuroepithelium from Human Pluripotent Stem Cells Facilitates Derivation of Photoreceptors , 2013, Stem cells.

[78]  Robert Langer,et al.  A vector-free microfluidic platform for intracellular delivery , 2013, Proceedings of the National Academy of Sciences.

[79]  Fei Huang,et al.  Rapid isolation of cancer cells using microfluidic deterministic lateral displacement structure. , 2013, Biomicrofluidics.

[80]  Todd Sulchek,et al.  Stiffness Dependent Separation of Cells in a Microfluidic Device , 2012, PloS one.

[81]  Dino Di Carlo,et al.  Label-Free Enrichment of Adrenal Cortical Progenitor Cells Using Inertial Microfluidics , 2012, PloS one.

[82]  Chao Liu,et al.  Double spiral microchannel for label-free tumor cell separation and enrichment. , 2012, Lab on a chip.

[83]  Yoshiki Sasai,et al.  Self-formation of optic cups and storable stratified neural retina from human ESCs. , 2012, Cell stem cell.

[84]  Susanne Braunmüller,et al.  Separation of blood cells using hydrodynamic lift , 2012 .

[85]  Evelyne Sernagor,et al.  Efficient Stage‐Specific Differentiation of Human Pluripotent Stem Cells Toward Retinal Photoreceptor Cells , 2012, Stem cells.

[86]  D. Clegg,et al.  Pluripotent human stem cells for the treatment of retinal disease , 2012, Journal of cellular physiology.

[87]  T. Reh,et al.  Production and transplantation of retinal cells from human and mouse embryonic stem cells. , 2012, Methods in molecular biology.

[88]  Adam P. DeLuca,et al.  Exome sequencing and analysis of induced pluripotent stem cells identify the cilia-related gene male germ cell-associated kinase (MAK) as a cause of retinitis pigmentosa , 2011, Proceedings of the National Academy of Sciences.

[89]  David M Gamm,et al.  Optic Vesicle‐like Structures Derived from Human Pluripotent Stem Cells Facilitate a Customized Approach to Retinal Disease Treatment , 2011, Stem cells.

[90]  Brian J. Wilson,et al.  ABCB5 identifies a therapy-refractory tumor cell population in colorectal cancer patients. , 2011, Cancer research.

[91]  T. Adachi,et al.  Self-organizing optic-cup morphogenesis in three-dimensional culture , 2011, Nature.

[92]  Fumitaka Osakada,et al.  Modeling Retinal Degeneration Using Patient-Specific Induced Pluripotent Stem Cells , 2011, PloS one.

[93]  G. Daley,et al.  Transplantation of Adult Mouse iPS Cell-Derived Photoreceptor Precursors Restores Retinal Structure and Function in Degenerative Mice , 2010, PloS one.

[94]  F. Hodi,et al.  Isolation of tumorigenic circulating melanoma cells. , 2010, Biochemical and biophysical research communications.

[95]  Pei-Rong Wang,et al.  Generation, Purification and Transplantation of Photoreceptors Derived from Human Induced Pluripotent Stem Cells , 2010, PloS one.

[96]  T. Reh,et al.  Directing human embryonic stem cells to a retinal fate. , 2010, Methods in molecular biology.

[97]  Su-Chun Zhang,et al.  Modeling early retinal development with human embryonic and induced pluripotent stem cells , 2009, Proceedings of the National Academy of Sciences.

[98]  Y. Sasai,et al.  In vitro differentiation of retinal cells from human pluripotent stem cells by small-molecule induction , 2009, Journal of Cell Science.

[99]  T. Reh,et al.  Transplantation of human embryonic stem cell-derived photoreceptors restores some visual function in Crx-deficient mice. , 2009, Cell stem cell.

[100]  Daniel M. Hallow,et al.  Shear‐induced intracellular loading of cells with molecules by controlled microfluidics , 2008, Biotechnology and bioengineering.

[101]  Nagahisa Yoshimura,et al.  Toward the generation of rod and cone photoreceptors from mouse, monkey and human embryonic stem cells , 2008, Nature Biotechnology.

[102]  R. Tompkins,et al.  Continuous inertial focusing, ordering, and separation of particles in microchannels , 2007, Proceedings of the National Academy of Sciences.

[103]  A. Swaroop,et al.  Chondroitinase ABC Treatment Enhances Synaptogenesis between Transplant and Host Neurons in Model of Retinal Degeneration , 2007, Cell transplantation.

[104]  T. Salt,et al.  Retinal repair by transplantation of photoreceptor precursors , 2006, Nature.

[105]  M. Sayegh,et al.  Regulation of Progenitor Cell Fusion by ABCB5 P-glycoprotein, a Novel Human ATP-binding Cassette Transporter* , 2003, Journal of Biological Chemistry.