Oscillator model reduction preserving the phase response: application to the circadian clock.
暂无分享,去创建一个
Linda R Petzold | Francis J Doyle | Stephanie R. Taylor | Stephanie R Taylor | F. Doyle | L. Petzold
[1] David E. Goldberg,et al. Genetic and evolutionary algorithms come of age , 1994, CACM.
[2] Eric Shea-Brown,et al. On the Phase Reduction and Response Dynamics of Neural Oscillator Populations , 2004, Neural Computation.
[3] Rudiyanto Gunawan,et al. Isochron-based phase response analysis of circadian rhythms. , 2006, Biophysical journal.
[4] Ulrich Maas,et al. Simplifying chemical kinetics: Intrinsic low-dimensional manifolds in composition space , 1992 .
[5] Premananda Indic,et al. Development of a Two-Dimension Manifold to Represent High Dimension Mathematical Models of the Intracellular Mammalian Circadian Clock , 2006, Journal of biological rhythms.
[6] Francis J Doyle,et al. A novel computational model of the circadian clock in Arabidopsis that incorporates PRR7 and PRR9 , 2006, Molecular systems biology.
[7] Erik D Herzog,et al. Vasoactive intestinal polypeptide mediates circadian rhythmicity and synchrony in mammalian clock neurons , 2005, Nature Neuroscience.
[8] M. Kramer,et al. Sensitivity analysis of oscillatory systems , 1984 .
[9] J. Tyson,et al. A simple model of circadian rhythms based on dimerization and proteolysis of PER and TIM. , 1999, Biophysical journal.
[10] B. Rusak,et al. Neuropeptides phase shift the mammalian circadian pacemaker , 1995, The Journal of neuroscience : the official journal of the Society for Neuroscience.
[11] A. Goldbeter,et al. Toward a detailed computational model for the mammalian circadian clock , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[12] Daniel B Forger,et al. Model based conjectures on mammalian clock controversies. , 2004, Journal of theoretical biology.
[13] John Durkin,et al. Tools and applications , 2002 .
[14] Goldberg,et al. Genetic algorithms , 1993, Robust Control Systems with Genetic Algorithms.
[15] David Paydarfar,et al. Starting, stopping, and resetting biological oscillators: in search of optimum perturbations. , 2004, Journal of theoretical biology.
[16] M. Mavrovouniotis,et al. Simplification of Mathematical Models of Chemical Reaction Systems. , 1998, Chemical reviews.
[17] Daniel B. Forger,et al. A detailed predictive model of the mammalian circadian clock , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[18] T. Turányi. Sensitivity analysis of complex kinetic systems. Tools and applications , 1990 .
[19] Francis J. Doyle,et al. ROBUST TIMEKEEPING IN CIRCADIAN NETWORKS: FROM GENES TO CELLS , 2007 .
[20] Achim Kramer,et al. Synchronization-Induced Rhythmicity of Circadian Oscillators in the Suprachiasmatic Nucleus , 2007, PLoS Comput. Biol..
[21] Ioannis P. Androulakis,et al. Kinetic mechanism reduction based on an integer programming approach , 2000 .
[22] Erik D Herzog,et al. GABA and Gi/o differentially control circadian rhythms and synchrony in clock neurons , 2006, Proceedings of the National Academy of Sciences.
[23] Marianthi G. Ierapetritou,et al. Design of flexible reduced kinetic mechanisms , 2001 .
[24] Lawrence. Davis,et al. Handbook Of Genetic Algorithms , 1990 .
[25] Zbigniew Michalewicz,et al. Genetic Algorithms + Data Structures = Evolution Programs , 1996, Springer Berlin Heidelberg.
[26] Richard E. Kronauer,et al. Reconciling Mathematical Models of Biological Clocks by Averaging on Approximate Manifolds , 2002, SIAM J. Appl. Math..
[27] S. Lam,et al. The CSP method for simplifying kinetics , 1994 .
[28] S. Bernard,et al. Spontaneous synchronization of coupled circadian oscillators. , 2005, Biophysical journal.
[29] G. Briggs,et al. A Note on the Kinetics of Enzyme Action. , 1925, The Biochemical journal.
[30] Ignacio E. Grossmann,et al. Part II. Future perspective on optimization , 2004, Comput. Chem. Eng..
[31] Vasilios Manousiouthakis,et al. KINETIC MODEL REDUCTION USING GENETIC ALGORITHMS , 1998 .
[32] David E. Goldberg,et al. Genetic Algorithms in Search Optimization and Machine Learning , 1988 .
[33] S. Strogatz. From Kuramoto to Crawford: exploring the onset of synchronization in populations of coupled oscillators , 2000 .
[34] Marc R. Roussel,et al. Geometry of the steady-state approximation: Perturbation and accelerated convergence methods , 1990 .
[35] Yoshiyuki Sakaki,et al. Temporal Precision in the Mammalian Circadian System: A Reliable Clock from Less Reliable Neurons , 2004, Journal of biological rhythms.
[36] Simon J. Fraser,et al. The steady state and equilibrium approximations: A geometrical picture , 1988 .
[37] Paul E. Brown,et al. Extension of a genetic network model by iterative experimentation and mathematical analysis , 2005, Molecular systems biology.
[38] Habib N. Najm,et al. Model Reduction and Physical Understanding of Slowly Oscillating Processes: The Circadian Cycle , 2006, Multiscale Model. Simul..
[39] L. Petzold,et al. Model reduction for chemical kinetics: an optimization approach , 1999 .
[40] Anthony Hall,et al. Disruption of Hepatic Leptin Signaling Protects Mice From Age- and Diet-Related Glucose Intolerance , 2010, Diabetes.
[41] Ignacio E. Grossmann,et al. Retrospective on optimization , 2004, Comput. Chem. Eng..
[42] Yoshiki Kuramoto,et al. Chemical Oscillations, Waves, and Turbulence , 1984, Springer Series in Synergetics.
[43] E D Gilles,et al. Reduction of mathematical models of signal transduction networks: simulation-based approach applied to EGF receptor signalling. , 2004, Systems biology.
[44] M S Turner,et al. Modelling genetic networks with noisy and varied experimental data: the circadian clock in Arabidopsis thaliana. , 2005, Journal of theoretical biology.
[45] Eve Marder,et al. Reduction of conductance-based neuron models , 1992, Biological Cybernetics.
[46] A. Winfree. The geometry of biological time , 1991 .
[47] M. A. Henson,et al. A molecular model for intercellular synchronization in the mammalian circadian clock. , 2007, Biophysical journal.
[48] Hans-Paul Schwefel,et al. Evolution and Optimum Seeking: The Sixth Generation , 1993 .
[49] Rudiyanto Gunawan,et al. Sensitivity Measures for Oscillating Systems: Application to Mammalian Circadian Gene Network , 2008, IEEE Transactions on Automatic Control.