Raman spectroscopy as a probe of protein structure in food systems

Raman spectroscopy can be a useful tool to probe protein structure in solid and liquid food systems. Bands in the Raman spectrum arising from amide I, amide III and skeletal stretching modes of peptides and proteins are useful for characterizing backbone conformation, including the estimation of secondary structure fractions. Bands attributed to various stretching or bending vibrational modes of functional groups of amino-acid residues can be used to monitor the environment around these side-chains. In particular, valuable information may be obtained on SS or SH groups of cystinyl or cysteinyl residues, CH groups of aliphatic residues, and aromatic rings of tryptophanyl, tyrosinyl and phenylalanyl residues. One important parameter distinguishing Raman spectroscopy from many other spectroscopic methods is its applicability to systems containing high concentrations of proteins, which is critical for the investigation of structural changes during processes such as coagulum or gel formation. Thus, changes in both intramolecular and intermolecular interactions can be studied. In this chapter, examples are presented on the application of Raman spectroscopy to investigate protein structure as a function of processing, such as heating, drying, salt addition or homogenization with lipids, which may be important to correlate with protein functionality in food systems.

[1]  J. L. Lippert,et al.  Laser Raman characterization of conformational changes in sarcoplasmic reticulum induced by temperature, Ca2+, and Mg2+. , 1981, The Journal of biological chemistry.

[2]  Robert A. Copeland,et al.  Methods for Protein Analysis , 1994, Springer US.

[3]  T. Kitagawa,et al.  The Raman spectra of Bence‐Jones proteins. Disulfide stretching frequencies and dependence of Raman intensity of tryptophan residues on their environments , 1979 .

[4]  I. Harada,et al.  Raman and ultraviolet resonance Raman spectra of proteins and related compounds , 1986 .

[5]  H. Scheraga,et al.  Disulfide bond dihedral angles from Raman spectroscopy. , 1973, Proceedings of the National Academy of Sciences of the United States of America.

[6]  T. Miyazawa,et al.  S–S AND C–S STRETCHING VIBRATIONS AND MOLECULAR CONFORMATIONS OF DIALKYL DISULFIDES AND CYSTINE , 1972 .

[7]  J. Lafaut,et al.  Tyrosine group behaviour in bovine α-lactalbumin as revealed by its Raman effect , 2004, European Biophysics Journal.

[8]  F. Jähnig,et al.  Models for the structure of outer-membrane proteins of Escherichia coli derived from raman spectroscopy and prediction methods. , 1986, Journal of molecular biology.

[9]  N. Yu,et al.  Laser-excited Raman spectroscopy of biomolecules. I. Native lysozyme and its constituent amino acids. , 1970, Journal of molecular biology.

[10]  H E Stanley,et al.  Laser raman spectroscopy--new probe of myosin substructure. , 1975, Science.

[11]  R. Mikkelsen,et al.  Effect of transmembrane ion gradients on Raman spectra of sealed, hemoglobin-free erythrocyte membrane vesicles. , 1978, Proceedings of the National Academy of Sciences of the United States of America.

[12]  Y. K. Levine,et al.  Derivative Raman spectroscopy applied to biomembrane systems , 1984 .

[13]  M. Glimcher,et al.  A Raman spectroscopic study of hen egg yolk phosvitin: structures in solution and in the solid state. , 1986, Biochemistry.

[14]  I. Harada,et al.  Raman spectroscopic characterization of tryptophan side chains in lysozyme bound to inhibitors: role of the hydrophobic box in the enzymatic function. , 1991, Biochemistry.

[15]  S. P. Verma,et al.  Raman spectra of some saturated, unsaturated and deuterated C18 fatty acids in the HCH-deformation and CH-stretching regions. , 1977, Biochimica et biophysica acta.

[16]  Y. Ozaki,et al.  Structural changes in the lens proteins of hereditary cataracts monitored by Raman spectroscopy. , 1983, Biochemistry.

[17]  N. Yu,et al.  A laser raman spectroscopic study of the effect of solvation on the conformation of ribonuclease A. , 1972, Journal of the American Chemical Society.

[18]  R. Yada,et al.  Secondary structure prediction and determination of proteins--a review. , 2009, International journal of peptide and protein research.

[19]  N. Yu,et al.  Raman spectroscopy: a conformational probe in biochemistry. , 1977 .

[20]  H. Susi,et al.  Protein structure by Fourier transform infrared spectroscopy: second derivative spectra. , 1983, Biochemical and biophysical research communications.

[21]  N. Yu,et al.  Laser-excited Raman spectroscopy of biomolecules: II. Native ribonuclease and α-chymotrypsin☆☆☆ , 1970 .

[22]  I. W. Levin,et al.  Fourier transform Raman spectroscopy of biological materials. , 1990, Analytical chemistry.

[23]  M. Tasumi,et al.  Raman spectroscopic study of the interaction between sulfate anion and an imidazolium ring in ribonuclease A. , 1982, Biochemistry.

[24]  R. Williams Protein secondary structure analysis using Raman amide I and amide III spectra. , 1986, Methods in enzymology.

[25]  J L Lippert,et al.  Determination of the secondary structure of proteins by laser Raman spectroscopy. , 1976, Journal of the American Chemical Society.

[26]  K. S. Krishnan,et al.  A New Type of Secondary Radiation , 1928, Nature.

[27]  G. Chumanov,et al.  Surface‐enhanced Raman spectroscopy of biomolecules. Part II. Application of short‐ and long‐range components of SERS to the study of the structure and function of membrane proteins , 1990 .

[28]  R. Williams,et al.  Raman spectroscopy of avidin: secondary structure, disulfide conformation, and the environment of tyrosine. , 1982, Biochemistry.

[29]  S. Nie,et al.  Near-infrared Fourier transform Raman and conventional Raman studies of calf gamma-crystallins in the lyophilized state and in solution. , 1991, Biophysical journal.

[30]  M. Pézolet,et al.  Laser Raman study of internally perfused muscle fibers. Effect of Mg2+, ATP and Ca2+. , 1983, Biochimica et biophysica acta.

[31]  K. Nakamoto,et al.  Laboratory Raman spectroscopy , 1984 .

[32]  H. Susi,et al.  Fourier Deconvolution of the Amide I Raman Band of Proteins as Related to Conformation , 1988 .

[33]  Y. Kawano,et al.  Raman and infrared studies on the conformation of porcine pancreatic and Crotalus durissus terrificus phospholipases A2. , 1989, Biochimica et biophysica acta.

[34]  Peptide backbone conformation and microenvironment of protein side chains , 1986 .

[35]  A. Clark,et al.  Infrared and laser-Raman spectroscopic studies of thermally-induced globular protein gels. , 2009, International journal of peptide and protein research.

[36]  C. Raman A new radiation , 1953 .

[37]  H. Susi,et al.  Laser-Raman spectra, sulfhydryl groups, and conformation of the cystine linkages of beta-lactoglobulin. , 1983, Biopolymers.

[38]  R. Clark,et al.  Spectroscopy of biological systems , 1986 .

[39]  S. Hamodrakas,et al.  Laser-Raman and infrared spectroscopic studies of protein conformation in the eggshell of the fish Salmo gairdneri. , 1987, Biochimica et biophysica acta.

[40]  R. Callender,et al.  Raman spectroscopic evidence for a disulfide bridge in calf γII crystallin , 1989 .

[41]  J. Bailey,et al.  Secondary structure perturbations in salt-induced protein precipitates. , 1991, Biochimica et biophysica acta.

[42]  C. Wharton,et al.  Ultraviolet (239 nm) resonance Raman spectroscopy of an enzyme-substrate intermediate of papain , 1987 .

[43]  J. Bandekar,et al.  Normal mode spectrum of the parallel‐chain β‐sheet , 1988 .

[44]  Harold A. Scheraga,et al.  Resolution enhancement in spectroscopy by maximum entropy fourier self‐deconvolution, with applications to Raman spectra of peptides and proteins , 1985 .

[45]  Paul R. Carey,et al.  Biochemical Applications of Raman and Resonance Raman Spectroscopies , 1982 .

[46]  R. Chambert,et al.  A Raman spectroscopic study on the interaction of an ion-channel protein with a phospholipid in a model membrane system (gramicidin A/L-alpha-lysophosphatidylcholine). , 1986, European journal of biochemistry.

[47]  J. Bandekar,et al.  Vibrational spectroscopy and conformation of peptides, polypeptides, and proteins. , 1986, Advances in protein chemistry.

[48]  Igor Nabiev,et al.  Surface‐enhanced Raman spectroscopy of biomolecules. Part I.—water‐soluble proteins, dipeptides and amino acids , 1990 .

[49]  B. Schrader Can a Raman renaissance be expected via the near-infrared Fourier transform technique? , 1991 .

[50]  J. Koenig,et al.  Raman studies of bovine serum albumin , 1976, Biopolymers.

[51]  Vibrational Spectra and Molecular Conformations of Dialkyl Disulfides , 1973 .

[52]  T. Barrett,et al.  Laser Raman light-scattering observations of conformational changes in myosin induced by inorganic salts. , 1978, Biophysical journal.

[53]  S. Nakai,et al.  Raman spectroscopic study of thermally and/or dithiothreitol induced gelation of lysozyme , 1991 .

[54]  P. Carey,et al.  Molecular structure of the protein crystal from Bacillus thuringiensis: a Raman spectroscopic study , 1986 .

[55]  R. Clark,et al.  Advances in Infrared and Raman Spectroscopy , 1982 .

[56]  H. Susi,et al.  Raman Spectroscopic Study of Casein Structure , 1988 .

[57]  J. Bailey,et al.  Structure-function relationships in the inorganic salt-induced precipitation of α-chymotrypsin , 1989 .

[58]  H. Scheraga,et al.  A Raman spectroscopic investigation of the disulfide conformation in oxytocin and lysine vasopressin. , 1977, Biochemistry.

[59]  S. Nakai,et al.  Importance of Hydrophobicity of Proteins in Food Emulsions , 1991 .

[60]  P. Carmona,et al.  Conformational features of lipids and proteins in myelin membranes using Raman and infrared spectroscopy , 1987 .

[61]  H. Susi,et al.  Fourier Transform Infrared Study of Proteins with Parallel β-Chains. , 1987, Archives of biochemistry and biophysics.

[62]  H. Susi,et al.  Examination of the secondary structure of proteins by deconvolved FTIR spectra , 1986, Biopolymers.

[63]  Y. Ozaki,et al.  Medical Application of Raman Spectroscopy , 1988 .

[64]  S. Nakai,et al.  Quantitation of Hydrophobicity for Elucidating the Structure—Activity Relationships of Food Proteins , 1991 .

[65]  Alain J. P. Alix,et al.  Determination of the secondary structure of proteins from the Raman amide I band: the reference intensity profiles method , 1987 .

[66]  L. Mayne,et al.  [15] Ultraviolet resonance Raman spectroscopy of biopolymers , 1986 .

[67]  M. Nakanishi,et al.  Conformation of the cystine linkages in bovine α-lactalbumin as revealed by its Raman effect☆ , 1974 .

[68]  Joanna Góral,et al.  Fourier Transform Raman studies of materials and compounds of biological importance , 1990 .

[69]  A. Dunker,et al.  Determination of the secondary structure of proteins from the amide I band of the laser Raman spectrum. , 1981, Journal of molecular biology.

[70]  R. Rand,et al.  Detection of changes in the environment of hydrocarbon chains by Raman spectroscopy and its application to lipid-protein systems. , 1973, Biochimica et biophysica acta.

[71]  S. P. Verma,et al.  Changes of Raman scattering in the CU-stretching region during thermally induced unfolding of ribonuclease. , 1977, Biochemical and biophysical research communications.

[72]  J. Koenig,et al.  Raman spectroscopic study of the proteins of egg white , 1976, Biopolymers.

[73]  C. Horváth,et al.  Salt effect on hydrophobic interactions in precipitation and chromatography of proteins: an interpretation of the lyotropic series. , 1977, Archives of biochemistry and biophysics.

[74]  Michel Manfait,et al.  Spectroscopy of Biological Molecules , 1985 .

[75]  Thomas G. Spiro,et al.  Biological applications of Raman spectroscopy , 1987 .

[76]  T. Shimanouchi,et al.  Interpretation of the doublet at 850 and 830 cm-1 in the Raman spectra of tyrosyl residues in proteins and certain model compounds. , 1975, Biochemistry.

[77]  R. Williams,et al.  Estimation of protein secondary structure from the laser Raman amide I spectrum. , 1983, Journal of molecular biology.