Alterations of DNA damage repair in cancer: from mechanisms to applications

DNA damage repair (DDR) pathways are essential to ensure the accurate transmission of genetic material. However, different endogenous and exogenous factors challenge genomic integrity. Mechanisms involved in the alterations of DDR pathways mainly include genetic inactivation and epigenetic mechanisms. The development and progression of carcinomas are closely associated with DDR pathway aberrations, including the epigenetic silencing of gene O6-alkylguanine-DNA methyltransferase (MGMT); deficiencies of mismatch repair (MMR) genes, including MutL homolog 1 (MLH1), MutS protein homologue (MSH)-2 (MSH2), MSH6, and PMS1 homolog 2; the mismatch repair system component (PMS2); and mutations of homologous recombination repair (HRR) genes, such as the breast cancer susceptibility gene 1/2 (BRCA1/2). Understanding the underlying mechanisms and the correlations between alterations to DDR pathways and cancer could improve the efficacy of antitumor therapies. Emerging evidence suggests that survival is higher in patients with DDR-deficient tumors than in those with DDR-proficient tumors. Thus, DDR alterations play a predictive and prognostic role in anticancer therapies. Theoretical studies on the co-administration of DDR inhibitors and other anticancer therapies, including chemotherapy, radiotherapy, immunotherapy, endocrine therapy, and epigenetic drugs, hold promise for cancer treatments. In this review, we focus on the basic mechanisms, characteristics, current applications, and combination strategies of DDR pathways in the anticancer field.

[1]  Ping-yuan Wang,et al.  ATM‐CHK2‐Beclin 1 axis promotes autophagy to maintain ROS homeostasis under oxidative stress , 2020, The EMBO journal.

[2]  Melike Çağlayan The ligation of pol β mismatch insertion products governs the formation of promutagenic base excision DNA repair intermediates , 2020, Nucleic acids research.

[3]  Kenneth Offit,et al.  Cancer Susceptibility Mutations in Patients With Urothelial Malignancies. , 2019, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[4]  Jin-Hong Kim Chromatin Remodeling and Epigenetic Regulation in Plant DNA Damage Repair , 2019, International journal of molecular sciences.

[5]  A. Goel,et al.  DNA Mismatch Repair Deficiency and Immune Checkpoint Inhibitors in Gastrointestinal Cancers. , 2019, Gastroenterology.

[6]  R. Visconti,et al.  New combinatorial strategies to improve the PARP inhibitors efficacy in the urothelial bladder Cancer treatment , 2019, Journal of Experimental & Clinical Cancer Research.

[7]  A. Melcher,et al.  ATR Inhibition Potentiates the Radiation-induced Inflammatory Tumor Microenvironment , 2019, Clinical Cancer Research.

[8]  G. Mills,et al.  State-of-the-art strategies for targeting the DNA damage response in cancer , 2018, Nature Reviews Clinical Oncology.

[9]  M. Baretti,et al.  DNA mismatch repair in cancer , 2018, Pharmacology & therapeutics.

[10]  J. Kyula,et al.  Combined ATR and DNA-PK Inhibition Radiosensitizes Tumor Cells Independently of Their p53 Status , 2018, Front. Oncol..

[11]  J. Szustakowski,et al.  Tumor Mutational Burden and Efficacy of Nivolumab Monotherapy and in Combination with Ipilimumab in Small-Cell Lung Cancer. , 2018, Cancer cell.

[12]  David M. Wilson,et al.  APE1 deficiency promotes cellular senescence and premature aging features , 2018, Nucleic acids research.

[13]  K. Kraemer,et al.  Pembrolizumab treatment of a patient with xeroderma pigmentosum with disseminated melanoma and multiple nonmelanoma skin cancers , 2018, The British journal of dermatology.

[14]  A. Maza,et al.  Efficacy of anti‐programmed cell death‐1 immunotherapy for skin carcinomas and melanoma metastases in a patient with xeroderma pigmentosum , 2018, The British journal of dermatology.

[15]  J. Szustakowski,et al.  Nivolumab plus Ipilimumab in Lung Cancer with a High Tumor Mutational Burden , 2018, The New England journal of medicine.

[16]  S. Baylin,et al.  An Effective Epigenetic-PARP Inhibitor Combination Therapy for Breast and Ovarian Cancers Independent of BRCA Mutations , 2018, Clinical Cancer Research.

[17]  Michael T. Zimmermann,et al.  Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas , 2018, Cell reports.

[18]  M. Sawyer,et al.  Durable Clinical Benefit With Nivolumab Plus Ipilimumab in DNA Mismatch Repair-Deficient/Microsatellite Instability-High Metastatic Colorectal Cancer. , 2018, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[19]  S. Gruber,et al.  Germline Genetic Features of Young Individuals With Colorectal Cancer. , 2017, Gastroenterology.

[20]  Juanita Lopez,et al.  Combining DNA damaging therapeutics with immunotherapy: more haste, less speed , 2017, British Journal of Cancer.

[21]  A. Levine,et al.  A neoantigen fitness model predicts tumour response to checkpoint blockade immunotherapy , 2017, Nature.

[22]  C. Desbois-Mouthon,et al.  Low Levels of Microsatellite Instability at Simple Repeated Sequences Commonly Occur in Human Hepatocellular Carcinoma. , 2017, Cancer genomics & proteomics.

[23]  E. Lander,et al.  A mutational signature reveals alterations underlying deficient homologous recombination repair in breast cancer , 2017, Nature Genetics.

[24]  Ludmila V. Danilova,et al.  Mismatch repair deficiency predicts response of solid tumors to PD-1 blockade , 2017, Science.

[25]  Robert J. Lonigro,et al.  Integrative Clinical Genomics of Metastatic Cancer , 2017, Nature.

[26]  C. Perou,et al.  Combined immune checkpoint blockade as a therapeutic strategy for BRCA1-mutated breast cancer , 2017, Science Translational Medicine.

[27]  P. Bruzzi,et al.  Excision repair cross complementation group 1 (ERCC-1) gene polymorphisms and response to nivolumab in advanced non-small cell lung cancer (NSCLC). , 2017 .

[28]  G. Walker,et al.  Mechanisms of DNA damage, repair, and mutagenesis , 2017, Environmental and molecular mutagenesis.

[29]  A. Giuliani,et al.  A Specific Mutational Signature Associated with DNA 8-Oxoguanine Persistence in MUTYH-defective Colorectal Cancer , 2017, EBioMedicine.

[30]  M. Weichenthal,et al.  Regression of melanoma metastases and multiple non-melanoma skin cancers in xeroderma pigmentosum by the PD1-antibody pembrolizumab. , 2017, European journal of cancer.

[31]  I. Ellis,et al.  Clinical Impact of Tumor DNA Repair Expression and T-cell Infiltration in Breast Cancers , 2017, Cancer Immunology Research.

[32]  N. Mosammaparast,et al.  Regulation of DNA Alkylation Damage Repair: Lessons and Therapeutic Opportunities. , 2017, Trends in biochemical sciences.

[33]  G. Hortobagyi,et al.  PARP Inhibitor Upregulates PD-L1 Expression and Enhances Cancer-Associated Immunosuppression , 2017, Clinical Cancer Research.

[34]  Gregory A. Breuer,et al.  2-Hydroxyglutarate produced by neomorphic IDH mutations suppresses homologous recombination and induces PARP inhibitor sensitivity , 2017, Science Translational Medicine.

[35]  J. Kyula,et al.  HSP90 inhibition sensitizes head and neck cancer to platin-based chemoradiotherapy by modulation of the DNA damage response resulting in chromosomal fragmentation , 2017, BMC Cancer.

[36]  H. Morreau,et al.  Practical guidance for mismatch repair-deficiency testing in endometrial cancer , 2016, Annals of oncology : official journal of the European Society for Medical Oncology.

[37]  S. Baylin,et al.  Enhancing the Cytotoxic Effects of PARP Inhibitors with DNA Demethylating Agents - A Potential Therapy for Cancer. , 2016, Cancer cell.

[38]  S. Bhide,et al.  CHK1 Inhibition Radiosensitizes Head and Neck Cancers to Paclitaxel-Based Chemoradiotherapy , 2016, Molecular Cancer Therapeutics.

[39]  K. Knudsen,et al.  Linking DNA Damage and Hormone Signaling Pathways in Cancer , 2016, Trends in Endocrinology & Metabolism.

[40]  Lauren L. Ritterhouse,et al.  Association and prognostic significance of BRCA1/2-mutation status with neoantigen load, number of tumor-infiltrating lymphocytes and expression of PD-1/PD-L1 in high grade serous ovarian cancer , 2016, Oncotarget.

[41]  Alan Ashworth,et al.  BRCAness revisited , 2016, Nature Reviews Cancer.

[42]  C. Perou,et al.  Oncometabolite D-2-Hydroxyglutarate Inhibits ALKBH DNA Repair Enzymes and Sensitizes IDH Mutant Cells to Alkylating Agents. , 2015, Cell reports.

[43]  K. Kinzler,et al.  The vigorous immune microenvironment of microsatellite instable colon cancer is balanced by multiple counter-inhibitory checkpoints , 2015, Journal of Immunotherapy for Cancer.

[44]  S. Gabriel,et al.  Genomic correlates of response to CTLA-4 blockade in metastatic melanoma , 2015, Science.

[45]  M. Esteller,et al.  Digital PCR quantification of MGMT methylation refines prediction of clinical benefit from alkylating agents in glioblastoma and metastatic colorectal cancer. , 2015, Annals of oncology : official journal of the European Society for Medical Oncology.

[46]  M. A. Sloane,et al.  Lynch Syndrome Associated with Two MLH1 Promoter Variants and Allelic Imbalance of MLH1 Expression , 2015, Human mutation.

[47]  C. Drake,et al.  Immune checkpoint blockade: a common denominator approach to cancer therapy. , 2015, Cancer cell.

[48]  Martin L. Miller,et al.  Mutational landscape determines sensitivity to PD-1 blockade in non–small cell lung cancer , 2015, Science.

[49]  T. Schumacher,et al.  Neoantigens in cancer immunotherapy , 2015, Science.

[50]  Maxim N. Artyomov,et al.  Checkpoint Blockade Cancer Immunotherapy Targets Tumour-Specific Mutant Antigens , 2014, Nature.

[51]  Yusuke Nakamura,et al.  Whole-Exome Sequencing of Muscle-Invasive Bladder Cancer Identifies Recurrent Mutations of UNC5C and Prognostic Importance of DNA Repair Gene Mutations on Survival , 2014, Clinical Cancer Research.

[52]  Steven J. M. Jones,et al.  Comprehensive molecular characterization of gastric adenocarcinoma , 2014, Nature.

[53]  A. Pandith,et al.  MGMT gene silencing by promoter hypermethylation in gastric cancer in a high incidence area , 2014, Cellular Oncology.

[54]  M. Weitzman,et al.  What's the damage? The impact of pathogens on pathways that maintain host genome integrity. , 2014, Cell host & microbe.

[55]  H. Drexler,et al.  Stable expression of MutLγ in human cells reveals no specific response to mismatched DNA, but distinct recruitment to damage sites , 2013, Journal of cellular biochemistry.

[56]  B. Klein,et al.  Nucleotide excision DNA repair pathway as a therapeutic target in patients with high-risk diffuse large B cell lymphoma , 2013, Cell cycle.

[57]  Joshua M. Stuart,et al.  Integrated genomic characterization of endometrial carcinoma , 2013, Nature.

[58]  Jeffrey J Meyer,et al.  Cancer Genome Atlas Network. Comprehensive molecular characterization of human colon and rectal cancer. Nature 2012. (5) , 2013 .

[59]  A. Chinnaiyan,et al.  Dual roles of PARP-1 promote cancer growth and progression. , 2012, Cancer discovery.

[60]  J. George,et al.  BRCA mutation frequency and patterns of treatment response in BRCA mutation-positive women with ovarian cancer: a report from the Australian Ovarian Cancer Study Group. , 2012, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[61]  Steven J. M. Jones,et al.  Comprehensive molecular characterization of human colon and rectal cancer , 2012, Nature.

[62]  Q. Wei,et al.  Genetic variants of the nonhomologous end joining gene LIG4 and severe radiation pneumonitis in nonsmall cell lung cancer patients treated with definitive radiotherapy , 2012, Cancer.

[63]  Rochelle L. Garcia,et al.  Mutations in 12 genes for inherited ovarian, fallopian tube, and peritoneal carcinoma identified by massively parallel sequencing , 2011, Proceedings of the National Academy of Sciences.

[64]  Axel Hoos,et al.  Ipilimumab plus dacarbazine for previously untreated metastatic melanoma. , 2011, The New England journal of medicine.

[65]  Wei Yan,et al.  Mechanistic rationale for inhibition of poly(ADP-ribose) polymerase in ETS gene fusion-positive prostate cancer. , 2011, Cancer cell.

[66]  J. Węsierska‐Gądek,et al.  Whether to target single or multiple CDKs for therapy? That is the question , 2011, Journal of cellular physiology.

[67]  E. Limbert,et al.  The role of common variants of non-homologous end-joining repair genes XRCC4, LIG4 and Ku80 in thyroid cancer risk. , 2010, Oncology reports.

[68]  D. Schadendorf,et al.  Improved survival with ipilimumab in patients with metastatic melanoma. , 2010, The New England journal of medicine.

[69]  M. Lieber,et al.  The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway. , 2010, Annual review of biochemistry.

[70]  A. Ashworth,et al.  Methotrexate induces oxidative DNA damage and is selectively lethal to tumour cells with defects in the DNA mismatch repair gene MSH2 , 2009, EMBO Molecular Medicine.

[71]  E. Jordanova,et al.  Colorectal carcinomas in MUTYH-associated polyposis display histopathological similarities to microsatellite unstable carcinomas , 2009, BMC Cancer.

[72]  A. Hartmann,et al.  Histopathologic Features and Microsatellite Instability of Cancers of the Papilla of Vater and Their Precursor Lesions , 2009, The American journal of surgical pathology.

[73]  H. Thierens,et al.  Polymorphisms in nonhomologous end‐joining genes associated with breast cancer risk and chromosomal radiosensitivity , 2008, Genes, chromosomes & cancer.

[74]  Ofra Barnett-Griness,et al.  Clinical outcomes of breast cancer in carriers of BRCA1 and BRCA2 mutations. , 2007, The New England journal of medicine.

[75]  C. Tzao,et al.  Epigenetic Inactivation of the Chromosomal Stability Control Genes BRCA1, BRCA2, and XRCC5 in Non–Small Cell Lung Cancer , 2007, Clinical Cancer Research.

[76]  W. Frankel,et al.  Screening for Lynch syndrome (hereditary nonpolyposis colorectal cancer) among endometrial cancer patients. , 2006, Cancer research.

[77]  Nazneen Rahman,et al.  ATM mutations that cause ataxia-telangiectasia are breast cancer susceptibility alleles , 2006, Nature Genetics.

[78]  W. Frankel,et al.  Screening for the Lynch syndrome (hereditary nonpolyposis colorectal cancer). , 2005, The New England journal of medicine.

[79]  R. Mirimanoff,et al.  MGMT gene silencing and benefit from temozolomide in glioblastoma. , 2005, The New England journal of medicine.

[80]  S. Gerson MGMT: its role in cancer aetiology and cancer therapeutics , 2004, Nature Reviews Cancer.

[81]  L. Aaltonen,et al.  Age-related hypermethylation of the 5' region of MLH1 in normal colonic mucosa is associated with microsatellite-unstable colorectal cancer development. , 2001, Cancer research.

[82]  J. Herman,et al.  Inactivation of the DNA repair gene O6-methylguanine-DNA methyltransferase by promoter hypermethylation is a common event in primary human neoplasia. , 1999, Cancer research.

[83]  H. Mackay,et al.  Olaparib combined with chemotherapy for recurrent platinum-sensitive ovarian cancer: a randomised phase 2 trial. , 2015, The Lancet. Oncology.

[84]  The Cancer Genome Atlas Research Network,et al.  Comprehensive molecular characterization of urothelial bladder carcinoma , 2014, Nature.

[85]  A. Lehmann,et al.  Xeroderma pigmentosum and related disorders: defects in DNA repair and transcription. , 2001, Advances in genetics.