Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription

[1]  M. Pellegrini,et al.  Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in Arabidopsis , 2006, Cell.

[2]  Hank C Wu,et al.  Development of Arabidopsis whole-genome microarrays and their application to the discovery of binding sites for the TGA2 transcription factor in salicylic acid-treated plants. , 2006, The Plant journal : for cell and molecular biology.

[3]  Kevin Struhl,et al.  Asf1 mediates histone eviction and deposition during elongation by RNA polymerase II. , 2006, Molecular cell.

[4]  F. Berger,et al.  Maintenance of DNA Methylation during the Arabidopsis Life Cycle Is Essential for Parental Imprinting[W] , 2006, The Plant Cell Online.

[5]  B. van Steensel,et al.  Chromosome-wide gene-specific targeting of the Drosophila dosage compensation complex. , 2006, Genes & development.

[6]  Jon Penterman,et al.  DEMETER DNA Glycosylase Establishes MEDEA Polycomb Gene Self-Imprinting by Allele-Specific Demethylation , 2006, Cell.

[7]  A. Bird,et al.  Genomic DNA methylation: the mark and its mediators. , 2006, Trends in biochemical sciences.

[8]  S. Henikoff,et al.  Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis , 2005, Genome Biology.

[9]  W. Lam,et al.  Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells , 2005, Nature Genetics.

[10]  J. Jurka,et al.  Repbase Update, a database of eukaryotic repetitive elements , 2005, Cytogenetic and Genome Research.

[11]  T. Bestor,et al.  Eukaryotic cytosine methyltransferases. , 2005, Annual review of biochemistry.

[12]  Steven E. Jacobsen,et al.  Gardening the genome: DNA methylation in Arabidopsis thaliana , 2005, Nature Reviews Genetics.

[13]  Stefan R. Henz,et al.  A gene expression map of Arabidopsis thaliana development , 2005, Nature Genetics.

[14]  E. Selker,et al.  Controlling DNA methylation: many roads to one modification. , 2005, Current opinion in genetics & development.

[15]  S. Henikoff,et al.  DNA Methylation Profiling Identifies CG Methylation Clusters in Arabidopsis Genes , 2005, Current Biology.

[16]  S. Henikoff,et al.  Silencing of transposons in plant genomes: kick them when they're down , 2004, Genome Biology.

[17]  Mark Groudine,et al.  Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells , 2004, Nature Structural &Molecular Biology.

[18]  Tetsuji Kakutani,et al.  Epigenetic Control of CACTA Transposon Mobility in Arabidopsis thaliana , 2004, Genetics.

[19]  Michael Black,et al.  Role of transposable elements in heterochromatin and epigenetic control , 2004, Nature.

[20]  S. Rhee,et al.  Functional Annotation of the Arabidopsis Genome Using Controlled Vocabularies1 , 2004, Plant Physiology.

[21]  L. Field,et al.  DNA methylation in insects , 2004, Insect molecular biology.

[22]  D. Reinberg,et al.  Transcription through chromatin: understanding a complex FACT. , 2004, Biochimica et biophysica acta.

[23]  Yeonhee Choi,et al.  One-Way Control of FWA Imprinting in Arabidopsis Endosperm by DNA Methylation , 2004, Science.

[24]  T. Kakutani,et al.  Control of development and transposon movement by DNA methylation in Arabidopsis thaliana. , 2004, Cold Spring Harbor symposia on quantitative biology.

[25]  E. Selker.  Genome defense and DNA methylation in Neurospora. , 2004, Cold Spring Harbor symposia on quantitative biology.

[26]  R. Fischer,et al.  Imprinting of the MEA Polycomb gene is controlled by antagonism between MET1 methyltransferase and DME glycosylase. , 2003, Developmental cell.

[27]  Kevin Struhl,et al.  The FACT Complex Travels with Elongating RNA Polymerase II and Is Important for the Fidelity of Transcriptional Initiation In Vivo , 2003, Molecular and Cellular Biology.

[28]  J. Svejstrup.  Histones Face the FACT , 2003, Science.

[29]  Craig D. Kaplan,et al.  Transcription Elongation Factors Repress Transcription Initiation from Cryptic Sites , 2003, Science.

[30]  S. Schreiber,et al.  Development and validation of a T7 based linear amplification for genomic DNA , 2003, BMC Genomics.

[31]  S. Jacobsen,et al.  Role of CG and Non-CG Methylation in Immobilization of Transposons in Arabidopsis , 2003, Current Biology.

[32]  J. Svejstrup.  Transcription. Histones face the FACT. , 2003, Science.

[33]  Xiaofeng Cao,et al.  Interplay between Two Epigenetic Marks DNA Methylation and Histone H3 Lysine 9 Methylation , 2002, Current Biology.

[34]  R. Martienssen,et al.  Robertson's Mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1). , 2001, Genes & development.

[35]  J. P. Jackson,et al.  The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene. , 2000, Molecular cell.

[36]  S. Jacobsen,et al.  Ectopic hypermethylation of flower-specific genes in Arabidopsis , 2000, Current Biology.

[37]  M W Simmen,et al.  Nonmethylated transposable elements and methylated genes in a chordate genome. , 1999, Science.

[38]  E. Selker,et al.  DNA methylation inhibits elongation but not initiation of transcription in Neurospora crassa. , 1997, Genes & development.

[39]  T. Hohn,et al.  Methylation of coding region alone inhibits gene expression in plant protoplasts. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[40]  A. Bird,et al.  Gene number, noise reduction and biological complexity. , 1995, Trends in genetics : TIG.

[41]  J. Rossignol,et al.  Methylation induced premeiotically in Ascobolus: coextension with DNA repeat lengths and effect on transcript elongation. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[42]  R. Felson.  “KICK 'EM WHEN THEY'RE DOWN”: , 1992 .

[43]  T. Bestor,et al.  DNA methylation: evolution of a bacterial immune function into a regulator of gene expression and genome structure in higher eukaryotes. , 1990, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.